nkx2.4b (nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186)


Basic Information

Item Value
gene id nkx2.4b
gene name nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21079804 ~ 21082714 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219541.1
aaaaaaaaaaaaagctgacgCCACTTGGAAGCTCAAAATGATACAAATTTGCGAGCGGAGCCGTTCTGATGGCATTCTTTGCGTATCTTTTGCTCCGTGAGTATTTTCTTCAATTACCAGGATGTCAATGGCTCGTTTTGCTCGTCGCTCCGCCCCCCCGTGTTTGTCGTAAACCCGCAGTCTGACGGGAATAAGGCAGAAATAAGAGCGTCTAGGACTCGCCTCTTTCACCAGGACGCGCACTCGGACCACGGAGAACGCGGTTACGCACGGCGGACACTTGGCGTCTGGCGGCAGCGCGCGCATCCACGGGCTTGTGGCGGCTTCGGCAAACTCGCTCGCGGGCTGAACCATGTCCTTGAGCCCCAAACACTCAACGCCTTTCTCAGTGAGCGACATTTTGAGCCCGATCGAGGAGACCTTCAAGAAGTTTGCGGCCATGGAGAGCAGCGCGAGCCTGGCGTCTCCTCTGTACAGACAGACGCAGGTGTCTCAGGCGAACCTGCAGCAGCACAGCATGAGCCACAACACCTACCACATGCCGCACTCGCAGTTCTCTCACGGCGCCATGGGAGGATACTGCAACGGGACTATCGGCGCCATGGGAGACCTGCCGTCCTATCAGGAGAGCATGAGGAACGGCGCCACGGCCACGGCTTGGTACGGCTCGAACCCCGAGCCCAGATACCCCACAATCTCCAGGTTTATGGGTCCCTCTGCGGGCATGAACATGGGAACGTTACCGGGCATGGATGCAAGTAAATCTATGGTGACTTTACACGCGGCGCCGCGGAGGAAACGGCGCGTGCTCTTCTCCCAGGCGCAGGTGTACGAGCTGGAGCGCCGCTTCAAGCAGCAGAAGTACCTGTCTGCGCCGGAGAGGGAACATTTGGCCAGCATGATTCACCTGACCCCGACCCAGGTCAAGATCTGGTTCCAGAATCACCGGTATAAAATGAAACGCCAAGCGAAGGATAAAGCGTCGCAGCACCAGCAGCAGGACAGCGGGAACCTGTGCGCTCAGCAGTCGCCTCGGCGCGTCGCGGTGCCCGTGCTGGTTAAAGACGGTAAACCGTGTCAGAACGGCTCGAGCACGCCGACGTCGATCCACCAGCAGGTGCAGAGCGTGCTGGGAAGCGAGACTTTAGCTTCGGCCGAGGATCTGGAGGAAATGTCGCCCAGTCCTCCCCTGATGAACAGCCTCTCTCAGACTGACGCCGCGCTCATCGAGTACACCAGCGGCATGGTGAGCTCCAACCTGCTGTACGGCAGAACTTGGTGATATTTCCGCGAGCATTTTCACCAACACAGACGATGACAACCGCAATTGAATTTCCtcaaagacctttttttttaaaacttttttttttttaaaacgaaaaAACGAAACGGCGTTCGTCCGATGCAGCGGTCCGCGGACCCTCGAGTGAATTGTATGGATTGTAACTTTAAATCGTTACCGAATGAAAACCTTTGGTGCAGATGATGAggagtgtgtgcgcgtgcgcgtgcgtgtgcgtgtttgATGAAGACTAGTCTAGCGTGATGCCATTAATCAGTTTTGTTGCTTTGTAAAATACGAGCTGTAgatgaagaaatgttttgtgtacATATCTAACACTGGGCAAAGAATGCTTTCTTGAAGTCTTTTGTAAGTTTAAAAGGAAACAATAAATATGAGCGCTgcgaatatataaaaaaacaaaacaaaaaaaaaacacgtgaatgcggtgttaaatatttttttgttactcaAAGTTTGATACAGCAAACTTGGCAGCCATTATGCATTATAGGCCTAATAGAAATAGGTTAATAGccaataacaaaataactagCAATTAtaattcagacaaaaaaaattaaatggtcAGACTgctaaaattttgtttttttctccaaagaTAAAAAtcaatctattttaaaatgtaatgttttacttgtttgttttttttttgcaattcattGTGAAATTTCTATCATTTGAGTGAAATTTCACTACATTTAACCTCGCAAAAACGCCAATATCTATATTTGCTATACATT

Function

symbol description
nkx2.4b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hypothalamus development and thyroid gland development. Predicted to be active in nucleus. Is expressed in several structures, including endocrine system; forebrain; neural keel; neural plate; and swim bladder. Orthologous to human NKX2-4 (NK2 homeobox 4).

NR:

description
PREDICTED: homeobox protein Nkx-2.4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0030878 thyroid gland development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219541.1 True 2046 mRNA 0.49 2 21079804 21082714

Neighbor

gene id symbol gene type direction distance location
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding downstream 114882 20945637 ~ 20964922 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding downstream 322070 20745202 ~ 20757734 (-)
ints9 ints9 coding downstream 361707 20706925 ~ 20718097 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding downstream 398983 20674997 ~ 20680821 (-)
cpsf2 cpsf2,LOC107704064,LOC107669458 coding downstream 406684 20661011 ~ 20673120 (-)
LOC122324706 NA coding upstream 71671 21154385 ~ 21168059 (-)
tram2 tram2,LOC107593275,LOC107721446 coding upstream 168034 21250748 ~ 21256606 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 176819 21259533 ~ 21264967 (-)
prdm1c NA coding upstream 182701 21265415 ~ 21274238 (-)
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding upstream 222996 21305710 ~ 21315327 (-)
LOC122325251 NA non-coding downstream 29828 21045825 ~ 21049976 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding downstream 83123 20996366 ~ 20996681 (-)
LOC122324961 NA non-coding downstream 84291 20992521 ~ 20995513 (-)
G140449 NA non-coding downstream 288103 20736588 ~ 20791701 (-)
G140413 NA non-coding downstream 452941 20626655 ~ 20626863 (-)
G140592 NA non-coding upstream 580 21083294 ~ 21083559 (-)
G140615 NA non-coding upstream 117923 21200637 ~ 21201961 (-)
G140635 NA non-coding upstream 164276 21246990 ~ 21247465 (-)
G140637 NA non-coding upstream 174676 21257390 ~ 21259521 (-)
G140683 NA non-coding upstream 349092 21431806 ~ 21432094 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 104049 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 421424 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 537555 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 1016827 20061602 ~ 20062977 (-)
G140227 cad other downstream 1020201 20057624 ~ 20059603 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 6690 21089404 ~ 21091008 (-)
G140616 NA other upstream 115996 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 400878 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 424530 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 649830 21732544 ~ 21741077 (-)

Expression


Co-expression Network