LOC122324861 (rhob,LOC107730407,LOC107704819,LOC107569216,LOC107549346,LOC107657220,LOC105907285,LOC103025336,LOC106607565)


Basic Information

Item Value
gene id LOC122324861
gene name rhob,LOC107730407,LOC107704819,LOC107569216,LOC107549346,LOC107657220,LOC105907285,LOC103025336,LOC106607565
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 3471994 ~ 3473405 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219569.1
ACATCATGTTTAATACTTCTGCCTGCGCAGTTGAACGTGTTTTTTCCGCTACATTTAGGTCGTGTAACACTTGATGGCGAGTATTCGCAAAAAGCTGGTGGTGGTTGGTGACGGGGCATGTGGGAAAACTTGTCTATTAATCGTTTTCAGCAAAGATGAATTTCCAGAAGTTTACGTGCCCACCGTTTTTGAAAACTACGTCGCGGACATTGACGTGGACTCCAAACGCGTTCAGCTGGCTTTATGGGACACGGCAGGACAGGAGGACTACGACCGATTGAGACCTTTGTCTTATCCGGATACTGATGTCATTCTCATGTGCTTCTCCGTGGACAGCCCGGACTCTCTGGAAAACATTCCAGAAAAATGGTTGCCGGAAGTTAAACACTTCTGTCCTAATGTGCCCATAATTTTGGTGGCGAATAAGAAAGACTTGCGGTGCGATGACAATGTGAGAAGCGAGCTGTCGAGAATGAAACAGGAACCAGTGAGAACGGAGGACGGACGCGCCATGGCTGCTCGCATCGGAGCACATGACTACATGGAGTGCTCTTCCAAAACCAAAGACGGGGTTAGGGAAGTGTTTGAGACCGCTACTCGAGCATCTTTACAGAAGAGACCAAGACCACCCGTTGGCTGTTTGAACTGTTGCCGACTGATGTGATTTGTCTTAAATAAACCGTTGACACAAAGGTGAGGGTTCTCGGGACACACCTCACGAAAAGATTGCTTTTTCGCATCCCATCAAAAACGACGCCTTGCTCGTAACTGCATATAGGCCCATTCAGGCTGGGCGCTGGATAAACCTTTGCTGAATTATGTTAATGGACTAAGGACTGTGGCACACGGCGTACCGATAGGTTTCACAGCTTAACCTTGTAGACTTGgcacttttttcttatttgagTAGAggatttttatttgattctttGATTATGCTGaattgaatgattaaaaaaaaacagaaagcaacTGATGTATTTATCATGTCCATTGTGATGTTGTTgtctattaattaattaaaatacactttGCTCTGTTTTGCCAACAACTGTTTTAGGtgtaataaattacagttttaaccAAATAGTTGCCTCTCTTAACgtttaaatattacatcatAAGAGAATTAATGTTTCAGGGAATGAATCAGAACTGCTGAAGACAcccatttttaatgtttatttggtCTGACAgagtttattaaatgtattggaCAGGCCTCAAAggccttttgttttcatttcaataaatttgCAACTAATTATGGGAAGATTCATAGACATAAGGTAAAGCAGTGTGAATACATGAGTGGCTTTGCTTGCAAATGAAGCAAATAAGAACATTTCACttcatgtcgtaccatgtatgtatgtgtatgtgacaaataaaatttgaatttgaatttgaaa

Function

symbol description
rhob Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Involved in several processes, including cellular response to hydrogen peroxide; cellular response to ionizing radiation; and regulation of cell migration. Located in cleavage furrow and endosome membrane. Biomarker of breast cancer.

NR:

description
PREDICTED: rho-related GTP-binding protein RhoB-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07856 RHOB; Ras homolog gene family, member B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219569.1 True 1412 mRNA 0.41 1 3471994 3473405

Neighbor

gene id symbol gene type direction distance location
LOC122324803 rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701 coding downstream 251445 3196313 ~ 3220549 (-)
LOC122324357 tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823 coding downstream 292712 3132081 ~ 3179282 (-)
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding downstream 623369 2787139 ~ 2848625 (-)
LOC122325188 LOC107714796,LOC107565462,LOC107670243,LOC107550532,LOC107676708,LOC107715681,LOC105017614,LOC106607890 coding downstream 693169 2761146 ~ 2778825 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding downstream 801139 2663778 ~ 2670855 (-)
tshr LOC107728338,LOC107549347,LOC107657214,LOC107681439,LOC107742823,LOC107569215 coding upstream 64468 3537873 ~ 3547204 (-)
trnat-ugu_52 NA coding upstream 975978 4449383 ~ 4449455 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding upstream 1195274 4668679 ~ 4674148 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding upstream 1222109 4695514 ~ 4705308 (-)
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding upstream 1375974 4849379 ~ 4881627 (-)
G135819 NA non-coding downstream 84465 3387192 ~ 3387529 (-)
G135782 NA non-coding downstream 233125 2866794 ~ 3238869 (-)
G135781 NA non-coding downstream 240620 2859267 ~ 3231374 (-)
G135691 NA non-coding downstream 711110 2759097 ~ 2760884 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding downstream 734105 2732603 ~ 2737889 (-)
G135901 NA non-coding upstream 423797 3897202 ~ 3897582 (-)
G135910 NA non-coding upstream 516452 3989857 ~ 3990072 (-)
G135916 NA non-coding upstream 531432 4004837 ~ 4006307 (-)
G135918 NA non-coding upstream 533150 4006555 ~ 4007352 (-)
G135970 NA non-coding upstream 567018 4040423 ~ 4040768 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 714564 2740552 ~ 2757430 (-)
G135548 NA other downstream 1107170 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 1458467 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 1595702 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 1811458 1655096 ~ 1660536 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 164884 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 495358 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 1090951 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 1537976 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 1551401 5024806 ~ 5029567 (-)

Expression


Co-expression Network