ipo13b (ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006)


Basic Information

Item Value
gene id ipo13b
gene name ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21168775 ~ 21201962 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219599.1
ATCGATTCGTCGGTTCAGTCAGAACGACAAGAACCGGAGAGGGAGGACACATGCACACCGGATCACCGGGGCCGCACCGAAACCAGTGGACACGTCTTTTTGACATATGGTGATATTTATAGGTCATCTGATATACGAAAGGCTTTTTTATCATGAGTGAAATATGAGATCGAGAGACATGAGCTCGCGCGCACCGGCCTGATCGCGCGCCGGGCCGAATCAAATTCAACTCAGAGATATTAATCAGCGGTTATTATTGCAGTTATTAATCAGCAGTATTCGTTTAAAGCATTAGGCGATAGATTGTGGTCAAGAGAGCGAGAGGAGGCGTGTGTTATAGTAAACACAGCGATGGATCCGGACACAGCCGCAGACTTCACCGTGGAAAACGTGGAAAAgGCCCTGCATCAGCTCTATTATGATCCCAACATTGAGAATAAGAACCTGGCTCAGAAATGGCTGATGCAGGCTCAAGTGTCTCCTCAGGCCTGGCAATTCTGCTGGGTTTTACTGAGACCAGAGAAGGTTCCAGAGATCCAATACTTTGGTGCTAGCGCCCTTCACACCAAGATCTCCCGCTACTGGGGCGACATCCCCGCCGAGCAGTACGACACACTCAAAACACAGCTGTTTTCTCAGATTGCTCGCTTCGCCTCTGGCTCTAAGATCGTCCTGACCCGCCTGTGCGTGGCGCTGGCGTCCCTGGCCCTCAACATGATGCCCGAGGCGTGGCCGGGGGCCGTGTCAGAGATGGTGCGCATGTTTCAGGAGGAAGGAGGCGAGGTGGACGGCCGCGCACGCTGTTTGGCTCTGTTGGAGCTCCTCACGGTTCTCCCAGAGGAGTTCCAGACCAGCCGACTGCCGCAGTATCGTAAGGGACAGGTGAGGGGCGCTCTGGGCCGCGAGTGGACGGCCGTTTACCCGCTCCTGCAGCAGCTGTTACGGCAGCCGGACTCTCCGCCGCTGGTGAAGGCCCGTGTGCTCAAGTGTCTGTCGAGCTGGGTTCTGCTGGACGTTCCTCTGAACGAGAGCGAGGGGTTGGTCGAGGCCAGTTTCACGGCGCTGGCAGATCCGGAGCTGTTCGATACGGCTGTGGAGGCCATCGTCAACACCATCTCACAGCCCGACTCACAGAGGTACGTGAACACTCTGCTGAAGTTGGTGCCGCAGGTGCTGCAGCTACAGGAACAGTTACGAGACGCCGTACAGAATGGAGACATGGAAACATCGCATGGCATCTGTCGAATTGCCGTCTCTCTAGGAGAGAATCATTCAAGAGCTCTGTTGGAGCAGGTGGAGCACTGGCAGAGTTTTCTGGCCCTGGTAAATATGATCATGTTCTGCACGGGCATCCCTGGTCACTACCCCGTCAACGAGACCACCAGCTCTCTTACGCTTACCTTCTGGTACACACTACAGGATGACATTATGTCGTTTGAGGCGGAGAAGCAGGCCATTTATCTGCAGGTGTACAGGCCTGTGTATTTCCAGCTCGTAGACGTTCTGCTGCACAAAGCTCAGTTCCCTACGGATGAGGAGTATGCTTCTTGGTCATCAGATGAGAAGGAGCAGTTCAGGATCtacagGGTGGATATATCCGACACACTGATGTATGTCTACGAAATGCTGGGAGCCGAATTACTCAGTAACCTGTACGACAAACTGGGACGACTCCTCACCAATACAGAGCAAACAACAACGTGGCAGcatACGGAAGCGCTGTTGTATGGATTCCAGTCTATCGCCGAAACGATAGATGTGAACTATTCTGACGTCATCCCAGGACTCATCGGTCTCATTCCAAGAATCAACATAAACAATGTCCAGCTGGCTGACACGGTCATGTTCACAATCGGAGCGTTGGCAGAGTGGTTGGCGGATCATCCGGTGATGTTGAGCAGCGTTCTGCCGCTGGTTTTGCAGGCGCTGGGCAATCCAGACCTGTCTGTTTCCAGCGTCTCCACGCTAAAGAAGATCTGCAGAGAGTGCAAATATGATCTGCCCCCGTATGCCACCAATATAGTCGCTGTTTCACAGgaAGTGCTTATTAAACAGATTCATAAGACGAGTCAGTGTATGTGGCTGATGCAGGCTCTGGGCTTTCTTTTGTCTGCGCTGCCGGTGGAGGAGATCTTGAGGAACCTTCACTCTCTCATCACCCCGTACATCCAACAACTGGAGAAACTAGCAGAGGAGACGccAAACCCCTCGAATAAACTGGCAATTATTCACATCCTCGGACTGTTGTCCAATCTCTTCACCACGCTGGACATCACCAAACAGGAGGAGGAGTCAGGAGACAATGCGCCGCCCATCAAATCAGCCCCGCCCCAGACAGGCCCCAACCCTGTGGTGGTGGTGCTCCAGCAGGTCTTTGCGCTGATACAGACAGTCCTCAGTAAATGGCTGAATGACTCACAGGTTGTGGAGGCAGTGTGTGCCATCTTTGAGAAGTCTGTGAAAACTCTCTTGCATGATTTTGCCCCCATGGTGTCTCAGCTGAGTGAGATGCTGGGGCAGATGTACAGTACCATACCACAGGCATCTGCGCTGGATTTAACACGCCAGATGGTCCACATATTTGCCAGTGAAACAAATCATTTCCCCCCAATTAAAGCGCTGTTTGAACTGGTCACTTCTGTCACTCTGACCATCTTCCAGCAAGggCCCAGGGATCATCCTGATATTGTTGATTCATTTATGCAACTCCAAGCTCAGGCCCTCAAACGGAAGCCCGATTTATTCTTATCAGAGAGTCTTGATGTTAAAGCCGTGTTTCACTGTGGAGTGCTGTCACTAAAATTTCCGGAAGCCCCGACAGTCAAATCTACCTGCCTTTTCTTTACGGAGCTAATACCACACTGCGCAGACATTCCTCCTGTTGGTCAGGTCGTGCAGGAAGATGGTAAACTTCTCCTATTGGCTGTACTGGAGGCCATCGGCGGTCAGTCGTCCCGCAGTCTGATGGATCAGTTTGCGGAGGTGCTCTTCTGTCTGAACAAGCATTGCTTCGCTCTGCTGACCGTGTGGCTCAAAGAAGCTCTGCGCTCGCCGGGCTTCCCATCCTCACGCGTCTCTGACGAGCAGAAAAACACGTTCAGCCAACAGGTGCTCAGGGAGCGAGTGAACAAGCGGCGAGTGAAAGACATTGTGAAGGAGTTCACCCTGGTGTGCCGTGGCCTTCACGGAACCGAATACGCAGCGGACTACTGAGCCACCACTCATACGGACACAGAGTGTGAGGAAAcccaaaaagtacaaaaaagtaCTCCCTGAAGCCCTCAGTGCGACGCGAATGACACGTGTCAGAACAGACCATCCGAGAGTCAGGATCTTCCTCCAAACTCGTTCCTTctcgcactctctctctctttcaaccACTGTCTCATTGGATTTTGGGGCCTCTGTAGGGCGATCTGAACAGACGACATCTCCGCCCCACCCCCCCCGCATCTCACGGCATGTTCGCTGGAAACCGTTCTTTGATTCTCCCATGTTCGATCGATCTTCCGTGGCTCCTGGGCTGTTTTCCTTGTGATAATTTGCATCCGTTTGAACAAAGAAATAGTGttagttaaatgtttttttatttttattttggagatactgaaataaaaagcatatatatacacatatatattaaaatatatataaatgcacataataaTCTAGTAAACTGTGGGGTGATGAGTCCGTGTGCTGCTAACAGAGAGAGGGACCAATACAGACTGATTTTTCTCTGTGGCTTTATATCTATCCTCTATATCTCTGTCTGTTTAACCCCTCACGCTCGATTCTGCCAAAATGTTGTGGACgttttttgaaatgaaatgattattatgattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatattagaaggTCAGCAGCATATTTGGTGACTAGTAGAGACTGGGCTTTACACAACGAATAAGAGAGAGATCGGTGCACTAAAATTCATTATTAGTCATCATTTATTACCATCATAACATTCCTAAcctgtacaattttttttagaaattcatCTTTGTGTTACACAAGGATTAAAGTTGTACAGGTTTATTTGCATTACTTTGATGAGATGGTGCTTAAATTCCTTTTTGGTTAAACAGTCCTTTTAATGTCAGTAGGTACATGAACACACATCGTGGTACCAGtaaacatttaatgtgcttttgaaAAGAGTTATTAAAGgtagagttcacccaaaatcgCTGCAAATTTGCTGAAGTTGTACTCTCTCTCAGGCCAtttaaaatgtagatgagttcaGTTTTTCATAGGAaaagatttgaagaaatgtatcattccatcacttgctcaccaatggccCCTGtgaagcgaatgggtgccgtcggaatgagagtccaaacagctgataaaaacattacaataatacacaagtaatccacactaCTCCAGTCGaacagttaatgtcttgtgagttgaaaagctgcatgtttgtgatGAACAAATCAATCGTTAAGgtgtttttatctttaaacTGTTGTTTCCTCTATCCATATTGTAAAAAAGGTTGTGCAATGGGTGAGAAATATGACAGATTAAACGGCAAAAAAATCAATTccaagcaaatacatttttccagCGGAGCaagtattaataattataaattctttttttttttttttgtccagaaGTGGGAGGTTTAAAGTTAAAGCCTCCTAATGATGGGTTTGTTTATGTTAATAAACATGCTGCTTTTCTTTGCATAAGACATTAACTGATAGACTGatgtggtgtggattacttgtgtataactatgttgtttttatcaactgtttggactcattctgacggcacccatttactgcagagcatTCATTGGTGAGTAAGTGATATAATGCTATATTTCTCCATCTGTTCTTATGAAAAAACCTGTCCTGAAGTTGAGTAAATTTTCATCAAATTTCAATTATAGGGCaaactatccttttaaacaCATACCgcctgtgtctctctctttttcgtTTCCTGCCCAGTTGCTTGCCGACATGTAGCATGTGTGTGGCCCAGAATGTGTCGTAATCAGTGGACGAGGGCTGTTCTATCGTGTTTGTTTACTAGCGAATCACAGAGTGAGAGCAaagggagagacagagacagaggagTCAAATGTACAttaggttttttgttttctttttctttttttgtaccttgttttaatttattaaatacatctgAGATGGCA
>XR_006247231.1
CATCGATTCGTCGGTTCAGTCAGAACGACAAGAACCGGAGAGGGAGGACACATGCACACCGGATCACCGGGGCCGCACCGAAACCAGTGGACACGTCTTTTTGACATATGGTGATATTTATAGGTCATCTGATATACGAAAGGCTTTTTTATCATGAGTGAAATATGAGATCGAGAGACATGAGCTCGCGCGCACCGGCCTGATCGCGCGCCGGGCCGAATCAAATTCAACTCAGAGATATTAATCAGCGGTTATTATTGCAGTTATTAATCAGCAGTATTCGTTTAAAGCATTAGGCGATAGATTGTGGTCAAGAGAGCGAGAGGAGGCGTGTGTTATAGTAAACACAGCGATGGATCCGGACACAGCCGCAGACTTCACCGTGGAAAACGTGGAAAAgGCCCTGCATCAGCTCTATTATGATCCCAACATTGAGAATAAGAACCTGGCTCAGAAATGGCTGATGCAGGCTCAAGTGTCTCCTCAGGCCTGGCAATTCTGCTGGGTTTTACTGAGACCAGAGAAGGTTCCAGAGATCCAATACTTTGGTGCTAGCGCCCTTCACACCAAGATCTCCCGCTACTGGGGCGACATCCCCGCCGAGCAGTACGACACACTCAAAACACAGCTGTTTTCTCAGATTGCTCGCTTCGCCTCTGGCTCTAAGATCGTCCTGACCCGCCTGTGCGTGGCGCTGGCGTCCCTGGCCCTCAACATGATGCCCGAGGCGTGGCCGGGGGCCGTGTCAGAGATGGTGCGCATGTTTCAGGAGGAAGGAGGCGAGGTGGACGGCCGCGCACGCTGTTTGGCTCTGTTGGAGCTCCTCACGGTTCTCCCAGAGGAGTTCCAGACCAGCCGACTGCCGCAGTATCGTAAGGGACAGGTGAGGGGCGCTCTGGGCCGCGAGTGGACGGCCGTTTACCCGCTCCTGCAGCAGCTGTTACGGCAGCCGGACTCTCCGCCGCTGGTGAAGGCCCGTGTGCTCAAGTGTCTGTCGAGCTGGGTTCTGCTGGACGTTCCTCTGAACGAGAGCGAGGGGTTGGTCGAGGCCAGTTTCACGGCGCTGGCAGATCCGGAGCTGTTCGATACGGCTGTGGAGGCCATCGTCAACACCATCTCACAGCCCGACTCACAGAGGTACGTGAACACTCTGCTGAAGTTGGTGCCGCAGGTGCTGCAGCTACAGGAACAGTTACGAGACGCCGTACAGAATGGAGACATGGAAACATCGCATGGCATCTGTCGAATTGCCGTCTCTCTAGGAGAGAATCATTCAAGAGCTCTGTTGGAGCAGGTGGAGCACTGGCAGAGTTTTCTGGCCCTGGTAAATATGATCATGTTCTGCACGGGCATCCCTGGTCACTACCCCGTCAACGAGACCACCAGCTCTCTTACGCTTACCTTCTGGTACACACTACAGGATGACATTATGTCGTTTGAGGCGGAGAAGCAGGCCATTTATCTGCAGGTGTACAGGCCTGTGTATTTCCAGCTCGTAGACGTTCTGCTGCACAAAGCTCAGTTCCCTACGGATGAGGAGTATGCTTCTTGGTCATCAGATGAGAAGGAGCAGTTCAGGATCtacagGGTGGATATATCCGACACACTGATGTATGTCTACGAAATGCTGGGAGCCGAATTACTCAGTAACCTGTACGACAAACTGGGACGACTCCTCACCAATACAGAGCAAACAACAACGTGGCAGcatACGGAAGCGCTGTTGTATGGATTCCAGTCTATCGCCGAAACGATAGATGTGAACTATTCTGACGTCATCCCAGGACTCATCGGTCTCATTCCAAGAATCAACATAAACAATGTCCAGCTGGCTGACACGGTCATGTTCACAATCGGAGCGTTGGCAGAGTGGTTGGCGGATCATCCGGTGATGTTGAGCAGCGTTCTGCCGCTGGTTTTGCAGGCGCTGGGCAATCCAGACCTGTCTGTTTCCAGCGTCTCCACGCTAAAGAAGATCTGCAGAGAGTGCAAATATGATCTGCCCCCGTATGCCACCAATATAGTCGCTGTTTCACAGgaAGTGCTTATTAAACAGATTCATAAGACGAGTCAGTGTATGTGGCTGATGCAGGCTCTGGGCTTTCTTTTGTCTGCGCTGCCGGTGGAGGAGATCTTGAGGAACCTTCACTCTCTCATCACCCCGTACATCCAACAACTGGAGAAACTAGCAGAGGAGACGccAAACCCCTCGAATAAACTGGCAATTATTCACATCCTCGGACTGTTGTCCAATCTCTTCACCACGCTGGACATCACCAAACAGGAGGAGGAGTCAGGAGACAATGCGCCGCCCATCAAATCAGCCCCGCCCCAGACAGGCCCCAACCCTGTGGTGGTGGTGCTCCAGCAGGTCTTTGCGCTGATACAGACAGTCCTCAGTAAATGGCTGAATGACTCACAGGTTGTGGAGGCAGTGTGTGCCATCTTTGAGAAGTCTGTGAAAACTCTCTTGCATGATTTTGCCCCCATGGTGTCTCAGCTGAGTGAGATGCTGGGGCAGATGTACAGTACCATACCACAGGCATCTGCGCTGGATTTAACACGCCAGATGGTCCACATATTTGCCAGTGAAACAAATCATTTCCCCCCAATTAAAGCGCTGTTTGAACTGGTCACTTCTGTCACTCTGACCATCTTCCAGCAAGGCCCTCAAACGGAAGCCCGATTTATTCTTATCAGAGAGTCTTGATGTTAAAGCCGTGTTTCACTGTGGAGTGCTGTCACTAAAATTTCCGGAAGCCCCGACAGTCAAATCTACCTGCCTTTTCTTTACGGAGCTAATACCACACTGCGCAGACATTCCTCCTGTTGGTCAGGTCGTGCAGGAAGATGGTAAACTTCTCCTATTGGCTGT

Function

symbol description
ipo13 Predicted to enable small GTPase binding activity. Acts upstream of or within protein import into nucleus. Predicted to be located in nucleus. Predicted to be active in cytoplasm.

NR:

description
PREDICTED: importin-13-like

GO: NA

KEGG:

id description
K25202 IPO13, RANBP13; importin-13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219599.1 True 5263 mRNA 0.46 21 21168776 21201962
XR_006247231.1 False 2875 transcript 0.52 18 21168775 21198619

Neighbor

gene id symbol gene type direction distance location
LOC122324705 LOC107691008,LOC107745915,LOC107593278,LOC562098 coding upstream 13319 21141916 ~ 21155456 (+)
mgst3a mgst3a,LOC107691015,LOC107745893,LOC107593307,LOC107573328,LOC107697123,LOC107719376 coding upstream 26961 21140158 ~ 21141814 (+)
LOC122325571 NA coding upstream 28977 21139684 ~ 21139798 (+)
LOC122325586 NA coding upstream 29647 21139014 ~ 21139128 (+)
LOC122325570 NA coding upstream 31010 21137649 ~ 21137765 (+)
LOC122324614 LOC107593306,LOC107691005,LOC107697122,LOC107719434,LOC107745903,LOC107721440,LOC107573326 coding downstream 1363 21203325 ~ 21242145 (+)
efhc1 efhc1,LOC107593305,LOC107721439,LOC107691013,LOC107719433,LOC107697121,LOC107575367 coding downstream 40213 21242175 ~ 21250397 (+)
LOC122325408 prep,LOC107691002,LOC107697213,LOC100698444 coding downstream 73688 21275650 ~ 21286245 (+)
gareml LOC107691001,LOC107593273,LOC107550383,LOC107697211,LOC107719372,LOC107721452 coding downstream 85802 21287764 ~ 21305362 (+)
hadhb hadhb,LOC107719432,LOC107721451,LOC107690999 coding downstream 113503 21315465 ~ 21324774 (+)
G140523 NA non-coding upstream 141306 21027000 ~ 21027469 (+)
G140506 crnkl1,LOC107669451,LOC107559132,LOC107704074,LOC107548429 non-coding upstream 195206 20972578 ~ 20973569 (+)
G140406 NA non-coding upstream 534971 20632724 ~ 20633804 (+)
G140381 clvs2,LOC107675107 non-coding upstream 552562 20564340 ~ 20616213 (+)
G140379 NA non-coding upstream 567398 20553100 ~ 20601377 (+)
G140673 NA non-coding downstream 227890 21429852 ~ 21430052 (+)
G140686 NA non-coding downstream 232631 21434593 ~ 21434796 (+)
G140708 NA non-coding downstream 280665 21482627 ~ 21483277 (+)
G140707 NA non-coding downstream 281643 21483605 ~ 21488243 (+)
G140691 NA non-coding downstream 314829 21516791 ~ 21518976 (+)
G140533 NA other upstream 66265 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 377072 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 494386 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 576616 20554113 ~ 20592159 (+)
ift172 ift172,LOC107716708,LOC107676240,LOC107727571,LOC107675043,LOC107602169 other upstream 1066237 20071974 ~ 20102538 (+)
G140785 NA other downstream 642184 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 1269799 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 1304765 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 1542450 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1640843 22842805 ~ 22860327 (+)

Expression


Co-expression Network