LOC122324872 (psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933)


Basic Information

Item Value
gene id LOC122324872
gene name psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 7308710 ~ 7313322 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219601.1
TCAATCTATCCGTAGTTACGTTGATTGCCAGCGACCAGCGGTGGTGAAAATGGGCCAGAGTCAAAGCGGAGGACACGGACCGGGAGGTGGAAAGAAAGATGATAAGgacaagaagaagaaatacGAGCCGCCCATTCCGACCAGAGTTGgcaagaagaagaggaagtCCAAGGGCCCTGATGCTGCCAGCAAACTGCCTTTAGTCACCCCTCACACACAGTGCAGGCTGAAGCTCCTGAAGCAGGAGAGAATCAAAGACTACCTGCTGATGGAGGAAGAGTTCATCAGGAACCAGGAGCAGATGAAACCTCTAGAGGAGAAACAGGAGGAGGAGAGGTCAAAAGTGGATGACCTGAGGGGAACTCCTATGTCTGTGGGCACCCTGGAGGAGATCATCGATGACAACCATGCCATCGTCTCCACATCTGTGGGCTCGGAGCACTATGTCAGCATTCTGTCATTCGTCGACAAAGATCTGCTGGAGCCCGGCTGCTCTGTTTTACTCAACCACAAGGTTCATGCAGTCATAGGGGTTTTGATGGACGACACGGACCCTCTTGTTACCGTCATGAAGGTGGAAAAGGCTCCGCAGGAGACGTACGCTGACATCGGCGGACTGGACGGTCAGATACAAGAAATTAAGGAGTCCGTGGAGCTGCCGCTGACCCATCCGGAGTATTATGAGGAGATGGGCATCAAGCCTCCCAAAGGGGTCATTCTCTACGGGCCCCCTGGAACAGGTAAAACTCTCCTTGCCAAGGCAGTGGCCAATCAGACATCTGCTACTTTTTTGCGGGTTGTTGGCTCAGAGCTGATTCAGAAGTATCTCGGCGACGGCCCTAAACTAGTCCGTGAGCtcttcagggtggcagaggAGCACGCTCCTTCGATCGTCTTCATCGATGAGATCGACGCCATTGGAACTAAGAGATACGACTCGAACTCGGGAGGTGAACGTGAAATTCAGAGAACCATGCTGGAGCTCCTCAATCAGCTGGATGGCTTTGACTCGCGTGGAGACGTGAAGGTCATTATGGCTACCAACAGAATAGAGACCCTTGACCCTGCTCTTATTAGACCGGGTCGCATCGACCGTAAGATCGAGTTTCCATTACCGGATGAGAAAACCAAGAGAAGGATCTTCCAGATCCACACCAGCAGAATGACAGTGGCTGAGGACGTGATCCTGGATGACCTCATCCTGGCTAAAGACGACCTTTCAGGGGCGGATATTAAGGCCATCTGTACAGAAGCAGGCCTCATGGCCCTCAGAGAACGCAGGATGAAGGTCACCAACGAGGACTTCAAGAAgtctaaagaaaatgttttgtataagaAGCAGGAGGGCACCCCCGAAGGCCTCTATCTCTAACCTTCTCACTTCTCATTTCTGTGTTTATATGCGAGTGCAGCACTCACTCTCGAGTTCACGTTTGGCTTAAATTTCCGCATGTTTTGTCCGCCAATTcgttttttgttattgtgatcaaaaaataaatactacagcTGGATCAGAGGTA

Function

symbol description
psmc1b Predicted to enable ATP binding activity; hydrolase activity; and proteasome-activating activity. Predicted to act upstream of or within protein catabolic process. Predicted to be located in cytoplasm and nucleus. Predicted to be part of proteasome complex. Orthologous to human PSMC1 (proteasome 26S subunit, ATPase 1).
psmc1 Enables RNA binding activity. Predicted to be involved in negative regulation of neuron death; positive regulation of proteasomal protein catabolic process; and protein catabolic process. Located in cytosol and nucleoplasm. Part of proteasome complex.

NR:

description
PREDICTED: 26S protease regulatory subunit 4-like

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K03062 PSMC1, RPT2; 26S proteasome regulatory subunit T2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219601.1 True 1520 mRNA 0.51 11 7308710 7313322

Neighbor

gene id symbol gene type direction distance location
LOC122325143 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 51136 7255499 ~ 7257574 (-)
LOC122325548 LOC107742115,LOC107664810 coding downstream 82728 7222636 ~ 7225982 (-)
LOC122325011 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding downstream 150091 7156267 ~ 7158619 (-)
LOC122325354 LOC107742115,LOC107664810 coding downstream 184027 7121351 ~ 7124683 (-)
flrt2 flrt2,LOC107752686,LOC107664820,LOC107564782,LOC107701229,LOC107570088,LOC107706955 coding downstream 600056 6673230 ~ 6708654 (-)
LOC122324873 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 coding upstream 8334 7321656 ~ 7325677 (-)
nfkbiaa NA coding upstream 54989 7368311 ~ 7370195 (-)
LOC122325568 NA coding upstream 226803 7540125 ~ 7540240 (-)
LOC122324531 foxn3,LOC107680774,LOC107755777,LOC107751738,LOC107583483 coding upstream 294810 7608132 ~ 7620574 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding upstream 543700 7857022 ~ 7874571 (-)
G136716 NA non-coding downstream 26906 7281372 ~ 7281804 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding downstream 56838 7152468 ~ 7251872 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding downstream 156956 7151390 ~ 7151754 (-)
LOC122324389 NA non-coding downstream 169419 7133748 ~ 7139291 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding downstream 178125 7127213 ~ 7130585 (-)
G136717 NA non-coding upstream 47545 7360867 ~ 7396292 (-)
G136724 NA non-coding upstream 172571 7485893 ~ 7487411 (-)
G136758 NA non-coding upstream 267703 7581025 ~ 7652975 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding upstream 356258 7669580 ~ 7771831 (-)
G136774 NA non-coding upstream 362621 7675943 ~ 7677043 (-)
G136707 NA other downstream 2986 7296861 ~ 7305724 (-)
G136688 NA other downstream 79747 7125748 ~ 7228963 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other downstream 857211 6432762 ~ 6451499 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other downstream 894697 6410962 ~ 6414013 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other downstream 1005734 6274754 ~ 6302976 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other upstream 22066 7335388 ~ 7340455 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other upstream 111514 7424836 ~ 7429282 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other upstream 118738 7432060 ~ 7436498 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other upstream 231034 7544356 ~ 7601602 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other upstream 380633 7693955 ~ 7696065 (-)

Expression


Co-expression Network