otofa (otofa,LOC107696112,LOC107726465)


Basic Information

Item Value
gene id otofa
gene name otofa,LOC107696112,LOC107726465
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 16380751 ~ 16427431 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219700.1
ATGGCTTTAGTAGTGTACCTGAAGACTGTCACGGAGCTTCGTGAAGGGGACCGCATCACTAAAGTCACTTTCAGAGgTCTCTCCTTCTTCTCTCGGGTGCTGGAAAACTGCGAGGATGAAGCTCGGTTTGAGCAGGCATTCCGTTGGCCAATTGGGAGTCAAGTGGACGGCGACGAGATGCTGGAGATTCAAGTGTTTAATTATAGCAAAGTCTTCACTAACAGgttAATTGGCACTTTCCGCATGGTTCTGCAGAAGGTGGTGGAGGAGGGTCACTTGGAGGTGTCTGACACTCTTATTGATGACAATAACACAGCCATACGGacAAGTATTTCCATAGAGATCAAATATCAAACCATGGATGGGAGTGTGAAGGTATGGAGCGATGGTGAATTCCTTGATATTCCAGATGACTGTGATGGAACTTTCCAGTTTGAGACAGAGAGTTTACTTTCTGGACGCAGCCAGAGCTCGGGCATCACCGGACGATCTATCCACGGCATTCCCACATTTCGCAAGACAGGAAAAGGAGTGTTTTCAGCCATGAAACTGGGCAAGACACGCATGTCTAAAGATGACCACAAAAAAGGAGATGATGCTGCCATTTTGGATGCAGAAGATCTGGATCGAAAGGCCATGCGTTTGGGTGGTGGACTTGACCCTGATACCATCTCACTGGCCTCCGTTACTGCAGTAACCACTAATGTCTCCAACAAAAGatcAAAGCCTGACATCAAGATGGAGCCCAGTTCGGGGCGTCCTGTGGATTATCAGatcagtGTTACAGTAATCGAGGCTCGTCAGTTGGTTGGTCTGAACATGGATCCTGTGGTTTGTGTGGAAATTGGAGAGGAGAAGAAGTATACATCGATGAAGGAGTCGACAAACTGTCCCTACTACAATGAGTACTTTGTCTTTGACTTCCATGTACCTCCGGATGTCATGTTTGACAAGATCCTTAAGATATCAGTAATACACTCTAAAAACCTTCTACGGAGTGGTACTTTGGTGGGCACCTTCAAACTAGATGTGGGCACTGTTTACTCACAACCTGAGCATCAGTTCCACCACAAATGGGCAATGTTGTCGGACCCTGACGACATCACGGCCGGCGGCAAAGGTTACGTTAAGTGCGACATTGCAGTCGTAGGAAAAGGAGACAACATCAAGACTCCCCACAAGGCCAATGAAGCAGATGAGGATGACATAGAGGGAAATCTTCTTTTGCCGGAGGGTGTTCCATCAGAGAGACAATGGGCTCGGTTTTATGTTAAGATTTATAGAGCTGAGGGACTACCAAAAATGAACACCAGCATCATGGCCAATGTGAAGAAAGCTTTTATTGGGGAGAACAGGGATTTGGTGGACCCATATGTCCTGGTTCAATTTGCAGGGCAGAAGGGTAAAACGTCAGTTCAGAAGAGCAGCTACGAGCCCATCTGGAATGAGCAAATAATCTTCACCGAGATGTTCCCACCTTTGTGTAGGCGACTGAAAGTTCAGATCCGTGATTCAGACAAGGTGAATGATGTTGCCATAGGAACCCATTTCATCGATCTACGAAAGATTGCAAATGATGGAGACAAAGGGTTCTTACCCACTATGGGCCCAGCCTGGGTGAATATGTATGGTTCAACTCGTAACTACACCCTGATGGATGAGCACCAGGACCTAAACGAGGGGCTGGGGGAAGGTGTGTCTTTCAGAGCACGCCTCCTTATTAGTATCGCAGTAGAGATCCTGGACACCACTTCAGCAGAAATAATGAGCTCTACTGAGGTACAAATAGAGACGGTGTCCAATATGTCAGAGAGTGCCACAGGGAAGATGGAGgagtttttcctttttggttCATTCTTGGAGGCCACAATGATAGACAGAAAAATTGGAGATAAACCCATCAGCTTTGAAGTCACTATTGGTAACTACGGTAACCAGATTGATGGAGTGAGCAAGCCTGCTTcagcaaagaagaagaaagagggTGGAGGGGAGAATGAAGAAGAGGAGACTGAGCTCATTCATAACTCCAGTGATGAAGAGGCAGAGGATGATGGAGATTTGACATCTGTGCCGTCCACTCCTCCTATGAAACCAGTTATTACTGACAGAAATTACTTCCACTTGCCTTACTTTGAAAAGAAACCCTGTATTTACATCAAGAGCTGGTGGCAAGACCAGAGAAGACGGCTCTACAACTCCAATATAATGGACAAGATTGCAGATAAACTGGAGGAAGGTCTGAATGATGTTcaagaaatcataaaaacagaGAAGGCATACCCAGAACGCAGACTTAGAGGTGTTTTAGAGGAGCTTAGCACAAGTTGCAGCCGATTTGTGACGCTGGCAAACAAAGATCAGAATCTATCTGGAAGAACCAAGCTGGACAAGGAAAGGCTAAAGTCCTGCATGAGAGAGTTGGAGAGCATGGCTCAGCAGTCGAAGACTATCCGTTCACAGGTGAAGAGAAACACAGTTCGAGACAAACTCAAGCTAGTGTTCAACTTCCTTCACAGGCTGCGTTTCCTGGCAGATGAGCCCCAGCACAGCATCCCTGATGTGTTCATATGGATGATTAGCAACAACAAACGCATAGCATACGCCCGCATTCCCTCCAAAGACATCCTCTACTCAATTGTTGACGAAGAGATGGGAAAAGACTGTGGGAAAGTTAAAGCGGTTTTTCTCAGGCTGCCTGGAAAGAAAGGCTTTGGGCCTGCTGGCTGGACAGTTCAGGCTAAATTGGAGATGTATTTGTGGCTGGGGTTGAACAAACAGAGGAAGGACTTCTTGAGTGGCCTCCCTAGCGGCTTTGAAGAAAACAAGGCTACGAAGGGAACAGGCATACAAGCTGTTCCTCCCGTCAGCCTGGTTTACAACATGAAGCAGGTGTTTCAGCTGAGGGCCCACATGTATCAGGCCCGCAGTCTGTTTGCTGCTGACAGTAGCGGCCTGTCTGACCCTTTTGCAAGGGTTTTCTTCTCCACCCACAGCCAGGTGACagagGTCCTCAGTGAGACTCTTTGTCCAACATGGGATCAGTTGCTTGTGTTTGATAATGTTGAGCTCTATGGTGAGGCTGGAGAGCTCCGTGATGATCCACCAATCATTGTCATTGAACTGTATGACCAAGACACTGTGGGGAAAGCTGAGTTCATTGGGCGCACATTTGCAAAGCCACTAACTAAGATGGTTGATGAACACTACGGGCCCCCGCGGTTTCCCCCCCAGCTGGAGTACTATCAGATCTACAGAGGAAACTGCGCTGCAGGAGATCTGTTGGCTGCTTTTGAACTACTGCAGATTGGTCCAGCAGGGCGAGCAGCACTTCCTCCAATTGATGGCCCGACTGATTCTGACCGTGGGCCCATTCTGCCTGTTCCACTGGGCATACGACCAGTTCTCAGCAGATATCGTATAGAGGTTCTGTTCTGGGGTCTGAGGGACCTGAAAAGAATCAACCTGGCTCAGGTGGACAGGCCTCGTGTGGACATTGAGTGTGCAGGGAAAGGAGTTCAATCAGCCCTCATTCAGAACTACAAGAAGAATCCTAACTTCAGCACTTTAGTGAAGTGGTTTGAAGTGGACCTGCCAGAAAATGAGCTACTTCATCCACCACTTAATATTCGTGTGGTGGACTGCAGGGCATTTGGACGCTACACCTTGGTGGGGTCTCATGCCGTGACCAGCCTTCGCAAGTTCATCTACAGCCCCCCAGACAAGACTGCTAACAACTGGGCTCACACCGGTGATATTGTGGTCAATATGGACCCTGAACCCAACATTAAGAAAATGGACACGGTTGTCAAGATTGATGCTACCACCGATGCTGTTGTTAAAGTTGACTTGAATGAggatgagaaagagaaagagaaagagaaaaagaaaaagaagaaaaagaagggtGAAGAAATGGATGAGGAGGAACCGGATGAAAGCATGTTGGACTGGTGGTCCAAATACTTTGCCTCAATAGAGACTATGATGGAGAATCTCAGAGCCCAGGAGGCCGCTCTGGCAGAGGCAGAGGAAAGAGAAGATTTAGAGATAGCAGCAGAGAATGCAGAGATCAAAGCAGATGACTTTCCTGTGAAAGGCACCAAACCCAAGGAAAAGAGCAAAGACAAGAAGAGCTCCAAGGACAAAAAGAAGAACCATGAAGGCACAGAAAAACGTCCCCCAAAACCAAAAGTTGATGAACTCATGATGTACAACAAAGAGCTGGAGTGTGAGTTTGGAAGCTTTGAGGACTGGCTCCACACCTTCAACCTGTATAGAGGAAAGGCTGGAGATGATATTGACCACAATGTGGTTGATGATGACAGGATTGTGGGCAGATTCAAGGGCTCCCTCTGTATGTATAAACTTCCACTGTCTGAGGAGATCACCAGGGAGGCAGGATTTGACCCAAACATGGGCATGTTCCAAAGTATTCCCCACAATGACCCTATCAATGTTCTCATAAGGATTTATATCATTAGAGCCACAGACCTGCATCCTGCAGATATAAATGGTAAAGCAGACCCTTATATAGTCATTCGATTGGGAAAATCAGAGATTCGGGACAAGGAGAACTACATATCCAAGCAGCTAAATCCTGTCTTTGGAAAGTCATTCGACATAGAGGCTACATTCCCAATGGAGTCCATGCTGACAGTTGCAGTGTATGATTGGGATTTGGTTGGAACTGATGACCTGATTGGTGAGACTAAGATTGATTTGGAGAACCGATATTACAGCAAACACAGAGCCACGTGTGGCATTGCATCCAACTACTCTGTCCATGGTTACAATGTATGGCGTGACCCTCAAAAGCCAACTCAGATCCTTGCTAAGTTGTGCAAAGAAGGTAAATTGGATGGACCCCATTACGGACCCGGTGGGAAGGTCAAAGTTGCAAACCGCATCTTTCTTGGGCCAACAGAAATTGAGGATGAGAGTGgtttgaagAAGCAGACAGAAGAGCACTTGGCTCTTACGGTTCTTAGGCATTGGGAGGAGATCCCACGTGTTGGCTGCAAACTCATCCCTGAGCATGTGGAGACCAGACCTCTCCTCAACCCAGACAAGCCAGGCATAGAGCAGGGAAGGATTGAAATGTGGGTGGACATGTTTCCTATGGATGTACCAGCTCCAGGACCAGCCATTGACATATCACCACGTAAACCAAAGAGATATGAGCTCAGGGTGATAATATGGAATACTGACGAGGTAATTCTGGAAGACGATGATTACTTCACAGGGGAAAAGTCCAGTGACATTTTTGTGAGGGGCTGGCTAAAAGGACAGCAGGAGGATAAACAGGACACAGACGTACATTATCACTCTCTAACCGGGGAAGGGAACTTCAACTGGCGCTTTGTTTTCCCTTTCGACTATCTCATGGCTGAGGAGAAGATAGTCATCTCTAAGAAGGAATCCATGTTTTCCTGGGATGAGACTGAGTACAAGATTCCTGCTCGACTCACCCTTCAAGTATGGGATGCCGACCATTTCTCCGCAGATGACTTTCTGGGTGCGATCGAGTTGGACTTAAATAAGTTTACCCGTGGGGCAAAAACAGCTAAGCAGTGCTCTCTTGACATGGTTCTCAAAGAGCACGAGCTACCAACCATCTccattttcaaacagaaaagagTGAAGGGCTGGTGGCCATTTGTGGCCCGGGATGAGAATGATGAATTTGAGCTCACAGGGAAAGTGGAGGCAGAGCTCCATCTATTGACAGCGGAGGAGGCAGAGAAAAATCCAGTCGGCCTTGGGCGGAATGAACCCGAGCCACTTGAGAAACCAAATCGTCCAGACACCAGTCTAATGTGGTTCATGAACCCTCTGAAGTCCATACGATACTTCATTTGGCACAACTACCGCTGGCTGATCCTGAAGACTCTGGCCCTGCTGCTCCTCCTTCTCCTCATTGGGCTCTTCCTCTACTCTATTCCTGGATACCTGGTCAAGAAACTCCTAGGGGCGTGAAGGGAGATGGGAAGACCACCGGTAGCCCACTCTCAGTGCCTCTGTTTTCTCtgctttccctctctctctgagccATTCACGgtgtatttctgtctttttgttaCTCATACCATATTTAAAAGCCTACAATTTGGACCAGAACGATTGTAGGTGATTAAGTATTTTCCGTTTTGTTATTTATCTGTCATCTCATCTCTTTCTAACAGCATATCTCTGTGTTATGTTGTACTTCTGGTCTTTGTGGTTGTCATTTGCCTCTGGTTGTTTGGGCAAAGATATAAATTGTGAATTTTATAAGATTTATAGTCAACTCTCTGCTGCTGTGCTTTCTGAACGTACCTTTTGTTGCCTGATGTGCCATCTTACCGCTCTGAGTTCAATCCACTGCAAATTTACAGGATCATGCACATACGAGGTAGTCCTAGGTGAACATTTTTACCAGCTCTgtgggatagttcactcaaaaatgaaaaatgttgttgtcatttactcacccttgtgtcgttcctttatgaaacacaaaagtaaagtaaaaatgcaatgGAAGACAATGGGAACGCtgtttggaccccattgactttaaTTGCATTGGCGAAACACTGtccaaaatgcattattttgttgtcagcagaagaaaataaaatcatacaggtttaaaaagACTAACACTTTTTCAtgttgagtgaactatccctttaaatagaaaatatgcCTTTAGGAGATTTTACAACTTTGCAGTCATGATACTAACCACTAACATTACCTCTCTTCCTCCATCATCCATGGTTTCACTTTTCAACTCACCACCTCTTACCTGCAACCCTTTCACCACCTCAATCACAGCCGGCCTGACACCACCTTCCTGTGGTTTTTGAGCCCGCTGAAGGCCATCCGCTACCTGATATGCAACCGCTACAAATGGCTCATCATCAAGATCGTCTTggctctgctgctgctgatcaTGGTGGGCCTGTTTCTCTAC

Function

symbol description
otofa Predicted to enable AP-2 adaptor complex binding activity and calcium ion binding activity. Involved in sensory perception of sound and startle response. Acts upstream of or within neuromuscular process controlling balance and response to auditory stimulus. Predicted to be located in several cellular components, including Golgi membrane; basolateral plasma membrane; and endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in presynaptic active zone membrane and synaptic vesicle membrane. Is expressed in nervous system; otic vesicle; and trigeminal placode. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 9. Orthologous to human OTOF (otoferlin).

NR:

description
otoferlin

GO:

id name namespace
GO:0016079 synaptic vesicle exocytosis biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016323 basolateral plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K19949 OTOF; otoferlin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219700.1 True 6961 mRNA 0.46 48 16380751 16427431
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Neighbor

gene id symbol gene type direction distance location
sod2 LOC107732630,LOC107726487,LOC107693221 coding upstream 54998 16322481 ~ 16325753 (+)
nhsl1b LOC107693225,LOC107732633,LOC107726444,LOC107549118,LOC107668206,LOC107601600 coding upstream 83071 16219107 ~ 16297680 (+)
acbd3 acbd3,LOC107668205,LOC107726445,LOC107549117,LOC107693226,LOC107732644,LOC107601671 coding upstream 164446 16209100 ~ 16216305 (+)
ccr6a LOC107732631,LOC107549115,LOC107693211,LOC107726495,LOC107668252,LOC107602849 coding upstream 174707 16202698 ~ 16206044 (+)
cep43 fgfr1op,LOC107693227,LOC107549114,LOC107726485,LOC107668251 coding upstream 178205 16191434 ~ 16202546 (+)
pdia6 LOC107732640,LOC107693218,LOC107549125,LOC107726466,LOC107601540,LOC107696113 coding downstream 2188 16429619 ~ 16435181 (+)
apobb.1 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107696115,LOC107601514 coding downstream 21845 16449276 ~ 16463963 (+)
slc22a16 slc22a16,LOC107693213,LOC107602826,LOC107601215,LOC107726421,LOC107696098,LOC107732637 coding downstream 38535 16465966 ~ 16476005 (+)
cd164 NA coding downstream 415776 16843207 ~ 16853940 (+)
sesn1 sesn1,LOC107601204,LOC107679493,LOC107726620,LOC107601436,LOC107696127,LOC107726430 coding downstream 431853 16859284 ~ 16895444 (+)
G138973 NA non-coding upstream 65991 16313711 ~ 16314760 (+)
G138961 NA non-coding upstream 162381 16218168 ~ 16218370 (+)
G138878 NA non-coding upstream 387288 15992311 ~ 15993463 (+)
G138870 LOC107549110,LOC107721378,LOC107601728,LOC107668221,LOC107726467 non-coding upstream 531727 15727221 ~ 15849024 (+)
G139036 NA non-coding downstream 50425 16477856 ~ 16478389 (+)
G139069 stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120 non-coding downstream 270876 16698307 ~ 16700980 (+)
G139081 NA non-coding downstream 332524 16759955 ~ 16760526 (+)
LOC122324686 NA non-coding downstream 484516 16911947 ~ 16944872 (+)
G139134 NA non-coding downstream 555625 16983056 ~ 16983992 (+)
LOC122325444 rps7,LOC107668222 other upstream 458471 15721861 ~ 15922280 (+)
G138869 LOC107732629,LOC107726464,LOC107693230,LOC107549112,LOC107601686 other upstream 583723 15763114 ~ 15797028 (+)
aven aven,LOC107549092,LOC107756595,LOC107671777,LOC107601941 other upstream 1190532 15169355 ~ 15190219 (+)
slc10a1 slc10a1,LOC107668231,LOC107671779,LOC107756602,LOC107721315 other upstream 1365379 15003410 ~ 15015372 (+)
LOC122324585 kif26aa,LOC107721264,LOC107602192,LOC107711661,LOC107668200,LOC107569886,LOC107659150 other upstream 2110413 14210022 ~ 14270338 (+)
henmt1 henmt1,LOC107710559,LOC107698398,LOC107555628,LOC107601273,LOC107726462 other downstream 1069464 17496895 ~ 17502015 (+)
ivns1abpa ivns1abpa,LOC107732388,LOC107726450,LOC107553504,LOC107599089,LOC107696153 other downstream 1361863 17789294 ~ 17802450 (+)
il17a/f3 stmn4,LOC107698329,LOC107553446,LOC107732387,LOC107719388,LOC103148820,LOC106907996,LOC106571034,LOC106608277 other downstream 1601699 18029130 ~ 18034178 (+)
cnih3 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC108440801,LOC108248696,LOC106527994,LOC106571455,LOC107095392 other downstream 2181081 18608512 ~ 18634663 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 2331198 18758629 ~ 18760209 (+)

Expression

otofa(otofa,LOC107696112,LOC107726465) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 30.
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otofa(otofa,LOC107696112,LOC107726465) Expression in each Bioproject

Bar chart with 2 bars.
otofa(otofa,LOC107696112,LOC107726465) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network