zgc:152816 (LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252)


Basic Information

Item Value
gene id zgc:152816
gene name LOC107719757,LOC107662076,LOC107560316,LOC107702950,LOC107573841,LOC107752252
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 27387290 ~ 27404395 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219716.1
CACAAATGCTCTCTTTGCAAGTGTGTGCTGAATTCCATGAAGACATGGAAAGACCATCTTTCAGGTGTCCGCCACAAATTACGTGAATCAGAACGGAGTTCTCGCTCATTTCCACCCCTAAAAGACCCTGCAACTCTGACTggGATCAGTACATGTCCACATCAGCGGACCACCTCTATCCTCCCAAGCCCAACACAAGAGTGGTAGTTGCCAAGTTTTCTATGGGTGCTGTGTCTGTAGGGGAGCTTTTAGAGCTTGGCAAACCATTCGGCACAATTGTGAAACATCTGGTGTTCCCAGCAAAGGGATTTTTGGAGTTTAGTTCTCACAAGGAGGCCCAGAATATGGTCAATCATTTCCAGTTGAAACCGGCCTTCATAAAGGAGAACCCAACTATCCTCTACTTATCACCAACAGTGGAAGGCATTTATACACCACCCAAGTTTGATGTGCCTTCACCAAAACGAACAAAACGTTCAAATGCGCCTTCAGTGGTTTGTTTTTCACGCTTGCCTCCGGGGGAGGGCGTGGAGGCTGAAGTACTGGAGCTTGCAGGCATGTTTGGTGAGGTGTGGCAGTCAAAGTTCATGGACTGTAAGgCCTTGATTGAGATGGTTGACTGGCGCGATGCTGACATCATGGTGAAGTATTACCACAGTAACCCACTGAGGATTCAGGGCAAAAGTGTTAAAGTGTCTATGTCACACATCACAACCCTGAGagaAAACAGTCCAGAGTCTTTGACCAGAAAATCTGACTCAAGCAAGCACAGTAGACAAAGAGAAGAGTCTACATCTAGCAACAAGGACAAAAGTGACGGCTCAAACCAGGAAGCCACAGAGAAAGAAGACTTGATGGAAAGTAAAGACAAGGTTCTCGACGATGTGGAGGGAATTCAGCTGGAGGATGAACCTGGGCTGCTTGATGAGGGGTCAGGAGGCATTGTGGGTAAAactgaagagaaagaaaaaaaggaagaggaggaaaagaTGGAAGAGGAGAAACCTACCACTGGTGAggaggagaacagagagagatgtTCAGAGCAGAATCAGGAGGAAGAGGGTGATTTGGATGATTCAGAATTTCCAGAGAACATAGAAGATTTTGTTACATTAGATGAGCTGGACAACAATGCTGGAGattCCTCTGTGCCGAAGGATAGTAAAGTAGTGGTGGTGTGGCCTGTAAAGAAGACCCCTGACTTGATGAAGGATCTTTACAATCTGTATGCACCCTTTGGTATCATGGTGAAGCATTCTTTATCTTCGTTCAAGCAAGAGGCTATGATCGAACTGGAAACAGCTGAAAAGGCCCAGGAAATGGTGCAGTTCTACAGCAATCACAAGGCAACGATATGTGGCAGGCCGGTGTCTGTTTCCATGTGCCTTACCATGAAAGCAATAGAGAGCCCTAGTGGAAGGtctgttttcatcagctgtctTCCCAACCAGAGGTACCAACGCCAGAAATACACAGACAAATCCCTCTTTAAACTAACTAAACCTTTTGGAAAACTGACGGGCTACTCTTTGCACAGGTATCAAGGAACGTGTTACATGCAGCTGGAAAGTACAAAGGCAGCTGAAAAGATGGTTGCGCAGTACAATCGGAGGCCTTGCAAATTCTGGGGGTCGGTGCTGAAGATAGCTATGTGCAGGAAAGGGGATTCTCTGATTCGCTGGAGATACCCCGAGAATGCAGAGGAAAGAGAgttaaaaacaaaggaaatgaAACCAAGCACTGAAAGAACAGAAAATGACCAGCCTATCAAGACTGGAGCAAAGGAGAACCAGCGCGGTTCTTTACCGGATTGTGAAGGTGTTGGTGGGGATCCAGTCTGTGAAAGTAAAGGTTCAGAAGAGGATAGTCAGCTGGACAAAACCCCTCTGAACCCCTATCAACCAGACCAAACTGTGGGTGTGAACTACGTCATCCCAGTCACTGGTTACTTTTGCAAGCTGTGTAACATATTCTACACAGACGAGAAGAAAGCAAGATCAGAGCACTGCCGCAGCCTTGAACACTACAACAACCTCAAGCTTAAACGCGCTGAAGTGGTGGAAGAGGCAGATGGACACCCAGATGGCTGAGTGAAAGAACACAAAGACGACAGCGACATTGTACTTTTGAtccattgttttttatttgttttcattccaGCTAGTTTCTATATTCTTTCcgttcaaatgttttgtttttcaacgTGTCAcaagagtgagtgagtgtgtgtgagagaggcaAAATTGTGAAGCCATTGTGATGGTTTGGATGTTGAACAGTAAGCAGAACGAACACGTATATCAGCTGATGGAGAACGTTACACTGAGCTCTTGAAATAAACTcgcgtttgtttgtttactgtcACTTGTA
>XM_043219717.1
TACTGTTAGCTGGAGGCAacgGGATTTTTGGAGTTTAGTTCTCACAAGGAGGCCCAGAATATGGTCAATCATTTCCAGTTGAAACCGGCCTTCATAAAGGAGAACCCAACTATCCTCTACTTATCACCAACAGTGGAAGGCATTTATACACCACCCAAGTTTGATGTGCCTTCACCAAAACGAACAAAACGTTCAAATGCGCCTTCAGTGGTTTGTTTTTCACGCTTGCCTCCGGGGGAGGGCGTGGAGGCTGAAGTACTGGAGCTTGCAGGCATGTTTGGTGAGGTGTGGCAGTCAAAGTTCATGGACTGTAAGgCCTTGATTGAGATGGTTGACTGGCGCGATGCTGACATCATGGTGAAGTATTACCACAGTAACCCACTGAGGATTCAGGGCAAAAGTGTTAAAGTGTCTATGTCACACATCACAACCCTGAGagaAAACAGTCCAGAGTCTTTGACCAGAAAATCTGACTCAAGCAAGCACAGTAGACAAAGAGAAGAGTCTACATCTAGCAACAAGGACAAAAGTGACGGCTCAAACCAGGAAGCCACAGAGAAAGAAGACTTGATGGAAAGTAAAGACAAGGTTCTCGACGATGTGGAGGGAATTCAGCTGGAGGATGAACCTGGGCTGCTTGATGAGGGGTCAGGAGGCATTGTGGGTAAAactgaagagaaagaaaaaaaggaagaggaggaaaagaTGGAAGAGGAGAAACCTACCACTGGTGAggaggagaacagagagagatgtTCAGAGCAGAATCAGGAGGAAGAGGGTGATTTGGATGATTCAGAATTTCCAGAGAACATAGAAGATTTTGTTACATTAGATGAGCTGGACAACAATGCTGGAGattCCTCTGTGCCGAAGGATAGTAAAGTAGTGGTGGTGTGGCCTGTAAAGAAGACCCCTGACTTGATGAAGGATCTTTACAATCTGTATGCACCCTTTGGTATCATGGTGAAGCATTCTTTATCTTCGTTCAAGCAAGAGGCTATGATCGAACTGGAAACAGCTGAAAAGGCCCAGGAAATGGTGCAGTTCTACAGCAATCACAAGGCAACGATATGTGGCAGGCCGGTGTCTGTTTCCATGTGCCTTACCATGAAAGCAATAGAGAGCCCTAGTGGAAGGtctgttttcatcagctgtctTCCCAACCAGAGGTACCAACGCCAGAAATACACAGACAAATCCCTCTTTAAACTAACTAAACCTTTTGGAAAACTGACGGGCTACTCTTTGCACAGGTATCAAGGAACGTGTTACATGCAGCTGGAAAGTACAAAGGCAGCTGAAAAGATGGTTGCGCAGTACAATCGGAGGCCTTGCAAATTCTGGGGGTCGGTGCTGAAGATAGCTATGTGCAGGAAAGGGGATTCTCTGATTCGCTGGAGATACCCCGAGAATGCAGAGGAAAGAGAgttaaaaacaaaggaaatgaAACCAAGCACTGAAAGAACAGAAAATGACCAGCCTATCAAGACTGGAGCAAAGGAGAACCAGCGCGGTTCTTTACCGGATTGTGAAGGTGTTGGTGGGGATCCAGTCTGTGAAAGTAAAGGTTCAGAAGAGGATAGTCAGCTGGACAAAACCCCTCTGAACCCCTATCAACCAGACCAAACTGTGGGTGTGAACTACGTCATCCCAGTCACTGGTTACTTTTGCAAGCTGTGTAACATATTCTACACAGACGAGAAGAAAGCAAGATCAGAGCACTGCCGCAGCCTTGAACACTACAACAACCTCAAGCTTAAACGCGCTGAAGTGGTGGAAGAGGCAGATGGACACCCAGATGGCTGAGTGAAAGAACACAAAGACGACAGCGACATTGTACTTTTGAtccattgttttttatttgttttcattccaGCTAGTTTCTATATTCTTTCcgttcaaatgttttgtttttcaacgTGTCAcaagagtgagtgagtgtgtgtgagagaggcaAAATTGTGAAGCCATTGTGATGGTTTGGATGTTGAACAGTAAGCAGAACGAACACGTATATCAGCTGATGGAGAACGTTACACTGAGCTCTTGAAATAAACTcgcgtttgtttgtttactgtcACTTGTA

Function

NR:

description
PREDICTED: matrin-3-like isoform X1

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219716.1 True 2373 mRNA 0.46 18 27387290 27404395
XM_043219717.1 False 2089 mRNA 0.45 15 27387290 27401985

Neighbor

gene id symbol gene type direction distance location
mtif3 LOC107719760,LOC107662074,LOC107560337,LOC107702912,LOC107576280 coding downstream 48191 27336495 ~ 27339099 (-)
LOC122325133 LOC107560346,LOC107740038,LOC107662093 coding downstream 239245 27146476 ~ 27148045 (-)
her7 LOC107548512,LOC107662101,LOC107740036,LOC107556023,LOC107722746,LOC107702916 coding downstream 438395 26947330 ~ 26948895 (-)
ganaba zgc:171967,LOC107662060,LOC107702959,LOC107722752,LOC107548499,LOC108427707 coding downstream 447006 26926233 ~ 26940284 (-)
trnas-gcu_32 NA coding downstream 772560 26614643 ~ 26614730 (-)
zgc:175280 zgc:175280,LOC107719755,LOC107702889,LOC107557764,LOC108430433 coding upstream 5107 27409502 ~ 27418420 (-)
LOC122325363 slc25a5,LOC107378486,LOC108430428,LOC106515500 coding upstream 169468 27573863 ~ 27577372 (-)
LOC122325076 ebf2,LOC107712533,LOC107560327,LOC107683778,LOC107557760 coding upstream 181236 27585631 ~ 27602190 (-)
G142540 abhd10a,LOC107719764,LOC107662095,LOC107560335 non-coding downstream 9763 27375209 ~ 27377527 (-)
G142529 NA non-coding downstream 53574 27333297 ~ 27333716 (-)
G142515 NA non-coding downstream 88414 27215632 ~ 27298876 (-)
G142521 NA non-coding downstream 105849 27278920 ~ 27281441 (-)
G142520 slc25a11,LOC107560342,LOC107702890,LOC107752240,LOC107557769 non-coding downstream 111101 27275371 ~ 27276189 (-)
G142586 NA non-coding upstream 42081 27446476 ~ 27451221 (-)
G142606 NA non-coding upstream 50298 27454693 ~ 27454892 (-)
G142590 LOC107662078,LOC107560333,LOC107719753 non-coding upstream 67389 27471784 ~ 27474801 (-)
G142614 NA non-coding upstream 71215 27475610 ~ 27476044 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other downstream 129808 27229803 ~ 27257482 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other downstream 462303 26922815 ~ 26924987 (-)
rps29 NA other downstream 826903 26483321 ~ 26560387 (-)
G142278 NA other downstream 1153045 26232024 ~ 26234245 (-)
G142281 NA other downstream 1199371 26185660 ~ 26187919 (-)
tex55 LOC107560331,LOC107702887 other upstream 71699 27476094 ~ 27478227 (-)

Expression


Co-expression Network