nsl1 (nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087)


Basic Information

Item Value
gene id nsl1
gene name nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19256688 ~ 19258698 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219738.1
tgaaaaataagcGGCAGCCATGGAGGCCGATCGCGAGAGCGGGACGGATTTTAGAATAAACGTCAAGTCGAAAAAACACGTCCGTGAGCAGCTTGAAAGGTATAAAGGCTTATTTAAAAAGTTGCTCGATGGCCAGTCCCACATTTCTGAGGAGGACAAATCTAAACTGCTGCAAGAAATGATCGTGAACTTTGAATTTACGGTGCAAGAAAATCTCGTTATCGGTGGCTTGTCCTGGGACGAGGTGCCGGAGCATTATTGTGAAGACTATGACAGCGCAATAAATGACGTTCTGGATGAGAAAATAGTAGAAACCGCCTGCAAACGCAGCTCTCACCCAAAGCAAATACGCAACCAGGTTGTTCGATCTTTAAGAGCAGAAAGGAAACTTCTGGGTTTGTATGAACAGGCGGTAAAACCACAAGACCTAAAGCCAGACCCCGTTCAAGacactgtcattaaaaatgtatcagatGCTGCACCTGCAATGTTCAAACAAGCCGGCACAGTTATGAggTCTCTGAAAAGTCTGAAGCAGGCAGCTGAGGGCTTGCGTCAAGTGCTTGACATGCAGCCTTCAGCGGAGTCGGTGGAGATCTACAATGAAGTGTTTGGCAGTTCAGTAGGAGATGTCTGTTCAGACCTCCACCACAGACTTCCCTGCACTATCAAAAGAGCTGCGTCTGATGCAGAATACAGTGCAGACTATGTACCTGCTCCAAAAACCGTCCAAATGACTGATTaatgtgtatctctgtgtgtgtcgtttttttttgtgggaatAGAGAAGGGCAGCATAGGAGTACCGTATTCATTCCTGTTATTAAATAAGTGTTTTGTATGTTGATTCTTACcagtataatgtaaataaatgttcactaaatgttttgttcgtatagttaaaaatgaaaataagttttctttttcatttacaataaatgatGACTTTTGTGCTGATGCGGTCCAGCTTCATACCACAAGATGTTGTTGGTCTACCAGTATTGGTTTCCTAATGATGGTACTTTCTGAACACGTTTTTATTAAACGTGGACAAACAGGgcctttttatgtttgtatcACATGTGaacaatgctgaaaaataaacaattctcCTAGCACATT

Function

symbol description
nsl1 Predicted to be involved in mitotic sister chromatid segregation. Predicted to be located in kinetochore. Predicted to be part of MIS12/MIND type complex. Orthologous to human NSL1 (NSL1 component of MIS12 kinetochore complex).

NR:

description
kinetochore-associated protein NSL1 homolog isoform X2

GO: NA

KEGG:

id description
K11545 NSL1, MIS14, DC8; kinetochore-associated protein NSL1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219738.1 True 1122 mRNA 0.42 6 19256688 19258698

Neighbor

gene id symbol gene type direction distance location
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding downstream 23871 19179809 ~ 19232817 (-)
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding downstream 90680 19096279 ~ 19166008 (-)
si:ch211-202p1.5 LOC107689457,LOC107727565,LOC107717067,LOC107675103,LOC107558944,LOC107553437 coding downstream 169503 19082545 ~ 19087185 (-)
trnaf-gaa_119 NA coding downstream 180570 19076046 ~ 19076118 (-)
nmbr nmbr,LOC107553439,LOC107727594,LOC107689462,LOC107675069,LOC107717045,LOC107558933 coding downstream 246509 19000843 ~ 19010179 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding upstream 197106 19455804 ~ 19487350 (-)
si:ch211-245h14.1 NA coding upstream 255382 19514080 ~ 19516523 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding upstream 283679 19542377 ~ 19554327 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 358063 19616761 ~ 19628027 (-)
cad cad coding upstream 370088 19628786 ~ 19647088 (-)
G139940 NA non-coding downstream 5898 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 96531 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 212774 19040790 ~ 19043914 (-)
G139823 NA non-coding downstream 426889 18824880 ~ 18829799 (-)
G139801 NA non-coding downstream 585755 18669438 ~ 18670933 (-)
G140152 NA non-coding upstream 76381 19335079 ~ 19341060 (-)
G140175 NA non-coding upstream 187130 19445828 ~ 19448712 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 478242 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 541824 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 646933 19905631 ~ 19909647 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 416 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 809739 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 906566 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 1432487 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1828565 17346806 ~ 17428123 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 2768 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 39536 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 342834 19601532 ~ 19615202 (-)
G140227 cad other upstream 798926 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 802904 20061602 ~ 20062977 (-)

Expression


Co-expression Network