ubxn2a (LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622)


Basic Information

Item Value
gene id ubxn2a
gene name LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22471761 ~ 22476774 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219746.1
GGGGCGACGGAGACGTCACAGGAATGGTGGACCGCCTTAGCGTACGGAGCGGCATGACAACTGTGAGAAACTTACGAGCTAAAGGGACACATTTACGACACCATTGAAGCCTtatactgAAAGTCCTGCTCCATGAATTATTGAGGTAGCGCTGATGCAGTGGTTACATTGACTTGCACCATCCCTTCTAACTTATATATGCCCACTTGTGTTTGTGCTGCAAGATggacaacaaaaaaagtcatgatGAGAGATATTGATTCAAGGGAAAGGGTTCAAGATGACACATGGTGTGAAGGGGCACaaaatgaggaagaggaggatgacgAGGAGGTGAATCCTATCAGATCCAGTTTCTCTGTGGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTCCCCAGCAGCGGCAAAAAGGTGGAGATTGTAGTGAGACTgtggaaaaatggtttcacgGTAAATGATGAAGATTTACGCAGTTACACTCTAGAAGAAAACCAAGAGTTCTTGGAGGCCATTAAAAGAGGCGAGCTGCCTCTGGAGCTTGAAGGAAGAGCCGAGGATGAAGAGCTAGAAGTCAATGTGGAGGACATGAAAGATGAGGTTTATGTCCCAAAGAAAAAGACCTTTCACCCGTTTACAGGCCGAGGTTACAGACTGGGAAGCGTTGCTCCGCGGGTGGTGGCCAGGTCCCGGTCGATACATGAGGACTGTTCTGGTCCTCCTCTCCCGGCTGTGGAGCTGAACGAGGACCTCCCTGTGACCTCCCTCCAGATCTGGCTGGCAGACGGTCAGCGTCTCGTGCAGAGGTTCAATCTGTGCCATCGGATCAGCGATGTGCTGCATTTTGTGGAGCAGGCTCAGAGAACGGACGCGCCGTTCATCCTGACTACATCCCTGCCGTATCGAGAGCTCCGAGACGAGGGTCAGAGTTTGGAGGAAGCTGATTTAGCAAATGCTGTCATCGTTCAGAGGCCTCTCAACACACAAGCTCCTTTTGGTCACTCCTGACTGTTCCTGCTTGCACCAGAGACTCAGATTTGTTGGTCCCACACACTTGAGAGACATTTCAAATCTTCTTCTTTCTCACatcacctaaaaaaataaaatctgctcACACAGGCCATCCAAGACCAAGATTAGTGTGTTTCTTCAAcggaacagatttgaagaaatttagcacttgctcaccaatgggtgCTCTGCAGTAAATGGTTGTCGTCAAAAGGTCCAAAGAGTTAATAAAAAGGTCACGGTAGTCCGCATGAATCCAGTCTATCAATTACTGTCTCGTCAAGCAAAAAGATCTCTGTTTGTAAGAATTATTGAGATGTTTGTGACATCAAGTTATTGCATCTGATCGTCTATGCATGATATTgctacagtaataataaaaaggatGTCTGAAGAGAAATATGCGCACATCGGGCACCGTTTATAAGCCAAAACAACAACTGATAAAATGCCTTGATGATGAATTTTGAAACATAATTATTTCACTTAATAAGACCGGAGTCGTTCACTGTTTGATTGGAGTCGTGTGTattacttttggattattgtgacgtttttaatcagctgattggactctcattctgacggcacccattcaccaacgagcatccattggtgagcaagtcaCAGAATGcagaatttctccaaatccgttttcatgaaaaaactaatttctcTACATCCTGGATGTCCTGAAggtcagtacatttttattccttttaaaccataaaccattgttttttggggtttttttccaaTTTCTTCTGATTTTGAAAACCTTTCTATGACATTATAGGTGGCCACTCAACACATTGCACAACTGAAATAGTTAGCAGCAACAGAAGGTAAACGGTTCACTGGATTAAACGATTCTCGCAATTTTCAGTCAAATTGGAATGACGTGGGCgatgaaaaatgttaaatgatgacagagctttcatatttagatatatctttttttttaattaggttttattttcattcgTTTTCTTTTTGTACTCCCTGCCATCACTCACGGTTGGATGTGTTGGCCTTTTCTGATGCAATGCAGTACGCACAAGCCAAGTCTTTAACCTTCACTATTACACATGTTTACACAGATCAATGAAGAATTCAGATCATGGAAGCTGCCATGATGCTTAATGGAGTTGTGTTCGATCATTTGTGATAGTATGTCTTACTGTGAGCCATTAAGTTATAAACGTCAAATGTTTTATGCACTTTGCCTAAGACAGAGACTCTGTTATAAAGACCTCTGCTTGCAATAAACCTACTGAAGATA
>XM_043219748.1
AGCGACGTGCGCACACGCGTTACGTGGGGCGACGGAGACGTCACAGGAATGGTGGACCGCCTTAGCGTACGGAGCGGCATGACAACTGTGAGAAACTTACGAGCTAAAGGGACACATTTACGACACCATTGAAGCCTtatactgATggacaacaaaaaaagtcatgatGAGAGATATTGATTCAAGGGAAAGGGTTCAAGATGACACATGGTGTGAAGGGGCACaaaatgaggaagaggaggatgacgAGGAGGTGAATCCTATCAGATCCAGTTTCTCTGTGGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTCCCCAGCAGCGGCAAAAAGGTGGAGATTGTAGTGAGACTgtggaaaaatggtttcacgGTAAATGATGAAGATTTACGCAGTTACACTCTAGAAGAAAACCAAGAGTTCTTGGAGGCCATTAAAAGAGGCGAGCTGCCTCTGGAGCTTGAAGGAAGAGCCGAGGATGAAGAGCTAGAAGTCAATGTGGAGGACATGAAAGATGAGGTTTATGTCCCAAAGAAAAAGACCTTTCACCCGTTTACAGGCCGAGGTTACAGACTGGGAAGCGTTGCTCCGCGGGTGGTGGCCAGGTCCCGGTCGATACATGAGGACTGTTCTGGTCCTCCTCTCCCGGCTGTGGAGCTGAACGAGGACCTCCCTGTGACCTCCCTCCAGATCTGGCTGGCAGACGGTCAGCGTCTCGTGCAGAGGTTCAATCTGTGCCATCGGATCAGCGATGTGCTGCATTTTGTGGAGCAGGCTCAGAGAACGGACGCGCCGTTCATCCTGACTACATCCCTGCCGTATCGAGAGCTCCGAGACGAGGGTCAGAGTTTGGAGGAAGCTGATTTAGCAAATGCTGTCATCGTTCAGAGGCCTCTCAACACACAAGCTCCTTTTGGTCACTCCTGACTGTTCCTGCTTGCACCAGAGACTCAGATTTGTTGGTCCCACACACTTGAGAGACATTTCAAATCTTCTTCTTTCTCACatcacctaaaaaaataaaatctgctcACACAGGCCATCCAAGACCAAGATTAGTGTGTTTCTTCAAcggaacagatttgaagaaatttagcacttgctcaccaatgggtgCTCTGCAGTAAATGGTTGTCGTCAAAAGGTCCAAAGAGTTAATAAAAAGGTCACGGTAGTCCGCATGAATCCAGTCTATCAATTACTGTCTCGTCAAGCAAAAAGATCTCTGTTTGTAAGAATTATTGAGATGTTTGTGACATCAAGTTATTGCATCTGATCGTCTATGCATGATATTgctacagtaataataaaaaggatGTCTGAAGAGAAATATGCGCACATCGGGCACCGTTTATAAGCCAAAACAACAACTGATAAAATGCCTTGATGATGAATTTTGAAACATAATTATTTCACTTAATAAGACCGGAGTCGTTCACTGTTTGATTGGAGTCGTGTGTattacttttggattattgtgacgtttttaatcagctgattggactctcattctgacggcacccattcaccaacgagcatccattggtgagcaagtcaCAGAATGcagaatttctccaaatccgttttcatgaaaaaactaatttctcTACATCCTGGATGTCCTGAAggtcagtacatttttattccttttaaaccataaaccattgttttttggggtttttttccaaTTTCTTCTGATTTTGAAAACCTTTCTATGACATTATAGGTGGCCACTCAACACATTGCACAACTGAAATAGTTAGCAGCAACAGAAGGTAAACGGTTCACTGGATTAAACGATTCTCGCAATTTTCAGTCAAATTGGAATGACGTGGGCgatgaaaaatgttaaatgatgacagagctttcatatttagatatatctttttttttaattaggttttattttcattcgTTTTCTTTTTGTACTCCCTGCCATCACTCACGGTTGGATGTGTTGGCCTTTTCTGATGCAATGCAGTACGCACAAGCCAAGTCTTTAACCTTCACTATTACACATGTTTACACAGATCAATGAAGAATTCAGATCATGGAAGCTGCCATGATGCTTAATGGAGTTGTGTTCGATCATTTGTGATAGTATGTCTTACTGTGAGCCATTAAGTTATAAACGTCAAATGTTTTATGCACTTTGCCTAAGACAGAGACTCTGTTATAAAGACCTCTGCTTGCAATAAACCTACTGAAGATA
>XM_043219749.1
TGGTGGACCGCCTTAGCGTACGGAGCGGCATGACAACTGTGAGAAACTTACGAGCTAAAGGGACACATTTACGACACCATTGAAGCCTtatactgATggacaacaaaaaaagtcatgatGAGAGATATTGATTCAAGGGAAAGGGTTCAAGATGACACATGCTCTTAGGTGTGAAGGGGCACaaaatgaggaagaggaggatgacgAGGAGGTGAATCCTATCAGATCCAGTTTCTCTGTGGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTCCCCAGCAGCGGCAAAAAGGTGGAGATTGTAGTGAGACTgtggaaaaatggtttcacgGTAAATGATGAAGATTTACGCAGTTACACTCTAGAAGAAAACCAAGAGTTCTTGGAGGCCATTAAAAGAGGCGAGCTGCCTCTGGAGCTTGAAGGAAGAGCCGAGGATGAAGAGCTAGAAGTCAATGTGGAGGACATGAAAGATGAGGTTTATGTCCCAAAGAAAAAGACCTTTCACCCGTTTACAGGCCGAGGTTACAGACTGGGAAGCGTTGCTCCGCGGGTGGTGGCCAGGTCCCGGTCGATACATGAGGACTGTTCTGGTCCTCCTCTCCCGGCTGTGGAGCTGAACGAGGACCTCCCTGTGACCTCCCTCCAGATCTGGCTGGCAGACGGTCAGCGTCTCGTGCAGAGGTTCAATCTGTGCCATCGGATCAGCGATGTGCTGCATTTTGTGGAGCAGGCTCAGAGAACGGACGCGCCGTTCATCCTGACTACATCCCTGCCGTATCGAGAGCTCCGAGACGAGGGTCAGAGTTTGGAGGAAGCTGATTTAGCAAATGCTGTCATCGTTCAGAGGCCTCTCAACACACAAGCTCCTTTTGGTCACTCCTGACTGTTCCTGCTTGCACCAGAGACTCAGATTTGTTGGTCCCACACACTTGAGAGACATTTCAAATCTTCTTCTTTCTCACatcacctaaaaaaataaaatctgctcACACAGGCCATCCAAGACCAAGATTAGTGTGTTTCTTCAAcggaacagatttgaagaaatttagcacttgctcaccaatgggtgCTCTGCAGTAAATGGTTGTCGTCAAAAGGTCCAAAGAGTTAATAAAAAGGTCACGGTAGTCCGCATGAATCCAGTCTATCAATTACTGTCTCGTCAAGCAAAAAGATCTCTGTTTGTAAGAATTATTGAGATGTTTGTGACATCAAGTTATTGCATCTGATCGTCTATGCATGATATTgctacagtaataataaaaaggatGTCTGAAGAGAAATATGCGCACATCGGGCACCGTTTATAAGCCAAAACAACAACTGATAAAATGCCTTGATGATGAATTTTGAAACATAATTATTTCACTTAATAAGACCGGAGTCGTTCACTGTTTGATTGGAGTCGTGTGTattacttttggattattgtgacgtttttaatcagctgattggactctcattctgacggcacccattcaccaacgagcatccattggtgagcaagtcaCAGAATGcagaatttctccaaatccgttttcatgaaaaaactaatttctcTACATCCTGGATGTCCTGAAggtcagtacatttttattccttttaaaccataaaccattgttttttggggtttttttccaaTTTCTTCTGATTTTGAAAACCTTTCTATGACATTATAGGTGGCCACTCAACACATTGCACAACTGAAATAGTTAGCAGCAACAGAAGGTAAACGGTTCACTGGATTAAACGATTCTCGCAATTTTCAGTCAAATTGGAATGACGTGGGCgatgaaaaatgttaaatgatgacagagctttcatatttagatatatctttttttttaattaggttttattttcattcgTTTTCTTTTTGTACTCCCTGCCATCACTCACGGTTGGATGTGTTGGCCTTTTCTGATGCAATGCAGTACGCACAAGCCAAGTCTTTAACCTTCACTATTACACATGTTTACACAGATCAATGAAGAATTCAGATCATGGAAGCTGCCATGATGCTTAATGGAGTTGTGTTCGATCATTTGTGATAGTATGTCTTACTGTGAGCCATTAAGTTATAAACGTCAAATGTTTTATGCACTTTGCCTAAGACAGAGACTCTGTTATAAAGACCTCTGCTTGCAATAAACCTACTGAAGATA
>XR_006247241.1
GGGGCGACGGAGACGTCACAGGAATGGTGGACCGCCTTAGCGTACGGAGCGGCATGACAACTGTGAGAAACTTACGAGCTAAAGGGACACATTTACGACACCATTGAAGCCTtatactgAAAGTCCTGCTCCATGAATTATTGAGGTAGCGCTGATGCAGTGGTTACATTGACTTGCACCATCCCTTCTAACTTATATATGCCCACTTGTGTTTGTGCTGCAAGATggacaacaaaaaaagtcatgatGAGAGATATTGATTCAAGGGAAAGGGTTCAAGATGACACATGGTGTGAAGGGGCACaaaatgaggaagaggaggatgacgAGGAGGTGAATCCTATCAGATCCAGTTTCTCTGTGGAGGACCTGCTCGATGAGGTGGAGAAGATCAGCAGTGTCCCCAGCAGCGGCAAAAAGGTGGAGATTGTAGTGAGACTgtggaaaaatggtttcacgGTAAATGATGAAGATTTACGCAGTTACACTCTAGAAGAAAACCAAGAGTTCTTGGAGGCCATTAAAAGAGGCGAGCTGCCTCTGGAGCTTGAAGGAAGAGCCGAGGATGAAGAGCTAGAAGTCAATGTGGAGGACATGAAAGATGAGGTTTATGTCCCAAAGAAAAAGACCTTTCACCCGTTTACAGGCCGAGGTTACAGACTGGGAAGCGTTGCTCCGCGGGTGGTGGCCAGGTCCCGGTCGATACATGAGGACTGTTCTGGTCCTCCTCTCCCGGCTGTGGAGCTGAACGAGGACCTCCCTGTGACCTCCCTCCAGATCTGGCTGGCAGACGGTCAGCGTCTCGTGCAGAGGTTCAATCTGTGCCATCGGATCAGCGATGTGCTGCATTTTGTGGAGCAGGCTCAGAGAACGGACGCGCCGTTCATCCTGACTACATCCCTGCCGTATCGAGAGCTCCGAGACGAGGGTCAGAGTTTGGAGGAAGCTGATTTAGCAAATGCTGTCATCGTTCAGAGGCCTCTCAACACACAAGCTCCTTTTGGTCACTCCTGACTGTTCCTGCTTGCACCAGAGACTCAGATTTGTTGGTCCCACACACTTGAGAGACATTTCAAATCTTCTTCTTTCTCACatcacctaaaaaaataaaatctgctcACACAGGCCATCCAAGACCAAGATTAGTGTGTTTCTTCAAcggaacagatttgaagaaatttagcacttgctcaccaatgggtgCTCTGCAGTAAATGGTTGTCGTCAAAAGGTCCAAAGAGTTAATAAAAAGGTCACGGTAGTCCGCATGAATCCAGTCTATCAATTACTGTCTCGTCAAGCAAAAAGATCTCTGTTTGTAAGAATTATTGAGATGTTTGTGACATCAAGTTATTGCATCTGATCGTCTATGCATGATATTgctacagtaataataaaaaggatGTCTGAAGAGAAATATGCGCACATCGGGCACCGTTTATAAGCCAAAACAACAACTGATAAAATGCCTTGATGATGAATTTTGAAACATAATTATTTCACTTAATAAGACCGGAGTCGTTCACTGTTTGATTGGAGTCGTGTGTattacttttggattattgtgacgtttttaatcagctgattggactctcattctgacggcacccattcaccaacgagcatccattggtgagcaagtcaCAGAATGcagaatttctccaaatccgttttcatgaaaaaactaatttctcTACATCCTGGATGTCCTGAAgGTGGCCACTCAACACATTGCACAACTGAAATAGTTAGCAGCAACAGAAGGTAAACGGTTCACTGGATTAAACGATTCTCGCAATTTTCAGTCAAATTGGAATGACGTGGGCgatgaaaaatgttaaatgatgacagagctttcatatttagatatatctttttttttaattaggttttattttcattcgTTTTCTTTTTGTACTCCCTGCCATCACTCACGGTTGGATGTGTTGGCCTTTTCTGATGCAATGCAGTACGCACAAGCCAAGTCTTTAACCTTCACTATTACACATGTTTACACAGATCAATGAAGAATTCAGATCATGGAAGCTGCCATGATGCTTAATGGAGTTGTGTTCGATCATTTGTGATAGTATGTCTTACTGTGAGCCATTAAGTTATAAACGTCAAATGTTTTATGCACTTTGCCTAAGACAGAGACTCTGTTATAAAGACCTCTGCTTGCAATAAACCTACTGAAGATA

Function

NR:

description
UBX domain-containing protein 2A isoform X3

GO: NA

KEGG:

id description
K24349 UBXN2A; UBX domain-containing protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219746.1 True 2299 mRNA 0.43 7 22471786 22476774
XM_043219748.1 False 2219 mRNA 0.43 7 22471761 22476774
XM_043219749.1 False 2177 mRNA 0.43 7 22471810 22476774
XR_006247241.1 False 2201 transcript 0.44 8 22471786 22476774

Neighbor

gene id symbol gene type direction distance location
LOC122325512 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 77327 22285647 ~ 22394434 (+)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding upstream 312833 22150436 ~ 22158928 (+)
napbb si:rp71-81o21.2,napb,LOC107756672,LOC107667620,LOC107742707,LOC108411873,LOC107593246,LOC103023605,LOC106571745,LOC106610947,LOC100691502 coding upstream 379979 22085016 ~ 22091782 (+)
gpcpd1 gpcpd1,LOC107593247,LOC107742708,LOC107756671,LOC107697181 coding upstream 389144 22067984 ~ 22082617 (+)
trmt6 trmt6,LOC107667616,LOC107697184,LOC107593280 coding upstream 414547 22046439 ~ 22057214 (+)
mfsd2b si:dkeyp-115a10.3,mfsd2b,LOC107750078,LOC107697177,LOC107603080,LOC107667608 coding downstream 1287 22478061 ~ 22498608 (+)
mmut mut,LOC107726757,LOC107697172,LOC107726528,LOC107667609 coding downstream 41391 22518165 ~ 22537861 (+)
runx2b runx2b,runx2,LOC107678859,LOC107726745,LOC107697170,LOC107603075 coding downstream 145614 22622388 ~ 22662318 (+)
mark3b mark3b,LOC107697167,LOC107743287,LOC107678848,LOC108412004,LOC107726756 coding downstream 209798 22686572 ~ 22738127 (+)
laptm4a laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288 coding downstream 262859 22739633 ~ 22744277 (+)
LOC122324401 NA non-coding upstream 356894 22098405 ~ 22114867 (+)
G140933 NA non-coding upstream 370300 22101238 ~ 22101461 (+)
G140931 NA non-coding upstream 373469 22097911 ~ 22098292 (+)
G140922 NA non-coding upstream 410228 22061063 ~ 22061533 (+)
G140905 NA non-coding upstream 493213 21933984 ~ 21978548 (+)
G141081 NA non-coding downstream 64344 22541118 ~ 22541327 (+)
G141084 NA non-coding downstream 65362 22542136 ~ 22542532 (+)
G141091 NA non-coding downstream 80455 22557229 ~ 22557502 (+)
G141121 NA non-coding downstream 443919 22920693 ~ 22923128 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 589813 23066587 ~ 23073665 (+)
G140785 NA other upstream 627060 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 1269799 21168775 ~ 21201962 (+)
G140533 NA other upstream 1369251 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1680058 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1797372 20673461 ~ 20674389 (+)
fkbp1b fkbp1b other downstream 29953 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 267638 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 366031 22842805 ~ 22860327 (+)
pln NA other downstream 866941 23343715 ~ 23351655 (+)
G141475 NA other downstream 1596097 24072871 ~ 24074423 (+)

Expression


Co-expression Network