LOC122324970 (cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202)


Basic Information

Item Value
gene id LOC122324970
gene name cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4917807 ~ 4928160 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219772.1
GAAGCAGCCAGAGGAAGGCAGCAAACACTACTCTGGGGACGGATCTTTACAAGCGTGGGAAGTGGAGAGAGCTCTATCTCGCAGTATCCCAGGCTTTCCCTGCCCTCTGTCTGCTCTGAAATCAACTGACAGAGTGTTGAAGTAATCAGAGCAGACCCGGCGCTGCCTAGAGCCTGTTTTCTTCTATCAAAACCAGAGCAGCCCCGTCGTTCTCAGAATCGGCTGCTTTGGATCTCTTTCGCAGTTTTTGGACCTTCTGGAGTCAAGGAGCAAAGACATGACACAGGTTGCGTCCAGAACCGGAGATATCTGAGGAAAGTGTTAGTCCAGACCAGTGTGAGGAGTTGGGAAGAGTCAGGCTGAGCACTATGACGGTTCGTGTGAAGCTGCTGGAATGTGCTGTGCTCAGCCTGACGTCCATCCACCCTGTGTCACGCTTAGGGCGCCCCTCTCGCCTACTACCTGGACGTCACGCACTTTGTGCATGTTCTTGCTGACTACACATGTGTTGGTATATTCTGGCTTTAGCAGTCAAGAGAAACAGaAGCTAGAGGAAATCTCTTCTGAACATTACCATAGCGCACCAGTGTAAGGCCTTGCGGAGCCAGTGCGGAGGAATTATCTGCTGTCAGGTCCTGCGCCGGGCTGATAGGGAAAGCAGCGCACTAAGGGCCACGGTGAGGGGGACGGCCGCAGGGGGAAGGGACCGACGATGCCGTCTTCCACCATGCAAATGTTTGCCTTTATTCTGGCGGTGCTGGGAGTCGTGAGTGCCACGGTGGCCACGCTGCTGCCCAACTGGAAAGTGAGCGCAGATGTGGGCTCCAACATCATGACTGCCATCTCGCAGATGCAGGGACTGTGGATGGACTgcacctggtacagcaccggAGTCTTCAGCTGCTCGCTTAAGTACTCCGTGTTGGCGTTGCCGGCTTATCTCCAGACTGCACGCACCACTATGGTGCTTTCCTGCATGATGGCGACAATGGGACTCTGTCTGGCCGCCCTAGGGCTGAAATGTACTCGCTGGGGTGGCAGTTATCGCTCGAAGGGACATACTGCGATTTCTGCAGGGGCTTGCTTCGTCATAGCAGGGGTGCTGTGTCTGGTGCCCGCATCCTGGTTCACCAATGAGGTCATCACGACGTTTATGGACTCCAAAGTGCCCAAAAGCAGCAAGTACGAGCCAGGGGCAGCGGTGTACGTGGCTTTCGTGTCGGCAGGATTCCTTTTAGCCGCAGGCGTAATCTTTTGCTTATCATGTCCTGGAAGAAGAGGCGGTCCATTGGATTCTGGCTCGTCCCACCCCGACAAGCCAAAACCGCAGAAGCCGAGCCAGGAGCAGCCGAACCGCGACCAACCCAAACAGCAGCACTGCGAACAGCAGAGTCAGACTGAACCTCCGGAACGAGAGGAATCGCATCGAGAGAAACTACACCAGGACAAGCTGCAAGCGGACAACCGGCAGCAAGAGAAGTCGAACCTAGAGAAGGACAAGCAGTACCTCTCTCCATCTCGAACCCGAAATCCAGACGCCAAGGCCGTCTACAGTCTGCACGACTATGTGTAAACATCTATCGAGTGTTCTTGGTTATCAGACTGCCTTTCTTTGTAAGCGGCAAAAAGAGGAGGGGAAAAGCAGGAGCAGCGGGAGGAATAATGACTTTGATGCTGTTATCAACCCTTCTCATCTGTGCTTTTGCTCACAGCAAGCGAAGCAGTGGAGGTATTTCCAAAGCCCCGGAACAGACAAAGTAAGGATTGTGAATCCTCGGGTACATGGTACAAAGGGGGCCGAGGGGTGACGTAtcataaaaaaggaaatttctTAAGCCGTCAAAGTAAGGAAAGTTCTGAAGATGCAAtggtttgaaaaaaatctgcattttataGTTGCACCATCATATCATTACTGAAACGCAAACTCTAAGAGaaccaaaattaaaaagctTGATACACACTGCTTATCTagcctagatttttttttgtctttttacagccaaaatatctagaaattctTCATTCAATCTcgttttcacaaaaaacaattcaaaattaagtgtttttacgtgatataaactaaataatctgccaatgggataagcaaaataatcttgtttttatgtttgaattaTTTCGCTTACCCTATTGGCAGATTATATGCTTGCTATAAGCAAAAAGCCACTTAattctttttctgaaaacaaaagctatttatacttgtctagaaaatccttcttgatttaagaatctAGGctagaaagcattttttgcagtgcattagGCAGTATGTGCATGCTGTTTGTAGATAATGCTGTTAATAATAGCTTGCAGTTGTGAAAGGGGGATAATCAAGCTTGCACCTGAGGATGCTTCACCCCATCAGCTGTCCATTAAATGGTGCATGTCCTTCACAAAAAGGGATTTTGACATGTCCAGTCcatatttttcaaagaatggtGATGGGGGGAGGCAGAGATCGTCTGAGGTAATGATGCTCTTTGCTTTTCCATTAGGTTCGCTACGGATGGGTGCACAGTGCTCATTTATTGCGCGCAGGCAGatacaccaacacacacacacaagcttttCTTCCCTCCCTCGTACTCCTGCTAGAAGGGTAATGGGGGCTTGCACCCAATCATCATGATGCTGTGCGTCAGTGTGTCGTGCCTGCAGGAAGTGCAGTCGGTCCTGTTCTAGGGCAAACAGGACGCAGTAACACGCTGTTCACACTTTTGTCGAAAAGTAGAACCAAGGAGACAGAAACCTCAGCGGTGGCTTCGGAGTCCCCCGCTGGGCAACAATTACACCTTTGGTCTGCGTCTCAAATCGGTCAAACCATCCGCAGTATTTTCTGATTGCTAAGCTGTTTTGGGTTACAGTCAAGCCATTGACCATTTTTTCAGAGTCAGGGGAAATAGGAAATGTTTGATATAATGTACCGCATTTGACTTGAGCTAATACTAAGTGTCATTGTCTGTGCTGTTTCCGTCGTAACGATGGTCAAGGGCTCCTATTGTCTCCAGAGAGACGCCACAGCAAGACATTTTCTGCCTTTCACTTCTGTCTCACATATAAGCACACATActgctgtttgtgtttgacATGCGTTTGCAGAATGCTTTAGAAATTGACAATGAAAGAGAGCAAcaaggcctttttttttaacaaagtgcCAATGGACCatgttttgctttattgttCATATACTGTcaaatcacctttatttatatagtacttttttctttaaatttgcTATAGTTATTTGGGTCCAAAAATCTGAGAACACTGGTGAAAATTATGCTATTTTacctttaatttgtttttataaaattcaaTTATCAAATTATatcaacaaattattattacattacaaaattatttcagtATAATTCAAGtgcaatttatatattgtactgaataaatattctGAATACTCTGAtgcttctttattttaaattatttttatttttcatgaaaaaaaaagaattcagaTTTTCATTATGGTCTAAGACGTTTGGGCAGCACTGTAAACAGTTGGATATGCCGATTGTGGCCTgaatcttattattattatcatatatgGGTTTTGTATAACCATCACATCAATACagacattttgaacattttgaaaatagcattttattttagtatttatatgTTTTCCCATGCTATTTTGttgtaaacacttttttttatttttaatcaaaaatttatcttttaagttattttattgaCCTTTGCagtgaataataaaacaattcatttcaTTACACGGTGATATACAGCAgagtgcaaaaatatttttggaatatATTTTGATGATAACAGAAATCCCTGTCCtattaaagcaaaatatattcatttatattttaaaatgttttaatgttataaCGGACATGCCTATTCAGTCCAGGtcacgtgcaaaaaaaaaaagtcacatgaaCAACTGCACGGATATTCAGAATTGGGTTTGGTTTGTTGTTTGAATGTATCTCCAGGAGTGTGTTTATATCAGCAcatgtacattatttttaagaaacagtGATCTGAAAATCTTCGATCATCATGACACGGTGAATGTTGACTACATTGAATGTTGCTTTGTGttaaattagtcattttgaaTGTTCTGTTTTGGCTTGACGAAATAAGGGCTTCATTTAGTGAATTTACAAACTGTGTGGCCAGTAACGATGTGAAACCATCAAATCCAATAAAGCACATACTTAAGCCTGTACAGTACAACAGAA

Function

symbol description
cldn20 Is expressed in brain; gill; kidney; spleen; and testis.

NR:

description
PREDICTED: claudin-20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219772.1 True 4259 mRNA 0.43 3 4917807 4928160

Neighbor

gene id symbol gene type direction distance location
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding downstream 36180 4849379 ~ 4881627 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding downstream 212499 4695514 ~ 4705308 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding downstream 243659 4668679 ~ 4674148 (-)
trnat-ugu_52 NA coding downstream 468352 4449383 ~ 4449455 (-)
tshr LOC107728338,LOC107549347,LOC107657214,LOC107681439,LOC107742823,LOC107569215 coding downstream 1370603 3537873 ~ 3547204 (-)
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding upstream 702 4928862 ~ 4966781 (-)
LOC122324828 cnksr3,ipcef1,LOC107560196,LOC107742203,LOC107679663,LOC107678675 coding upstream 44888 4973048 ~ 5010559 (-)
ttc13 ttc13,LOC107679664,LOC106571397 coding upstream 106189 5034349 ~ 5052435 (-)
fam89a fam89a,LOC107727345,LOC107742210,LOC107685750,LOC107679680 coding upstream 132547 5060707 ~ 5064427 (-)
sprtn sprtn,LOC107685751,LOC107727344,LOC107679685,LOC107742220,LOC107548399,LOC107733995 coding upstream 138455 5066615 ~ 5072155 (-)
G136069 NA non-coding downstream 181001 4736549 ~ 4736806 (-)
G136012 NA non-coding downstream 471604 4445773 ~ 4446203 (-)
trnat-ugu_51 NA non-coding downstream 619252 4298483 ~ 4298555 (-)
G135980 NA non-coding downstream 646118 4271296 ~ 4271689 (-)
G135978 NA non-coding downstream 650228 4266524 ~ 4267579 (-)
G136175 NA non-coding upstream 90201 5018361 ~ 5018866 (-)
G136176 NA non-coding upstream 105439 5033599 ~ 5033804 (-)
G136180 NA non-coding upstream 163140 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 184013 5112173 ~ 5119766 (-)
G136350 LOC107746236,LOC107672706,LOC107741192,LOC107663224,LOC107557109 non-coding upstream 724139 5652299 ~ 5652925 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other downstream 335710 4564356 ~ 4582097 (-)
LOC122325550 NA other downstream 942549 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 1047741 3638289 ~ 3870066 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 2160377 2740552 ~ 2757430 (-)
G135548 NA other downstream 2552983 2364053 ~ 2364824 (-)
si:ch73-111k22.3 LOC107742221 other upstream 83221 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 96646 5024806 ~ 5029567 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 233046 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 663178 5591338 ~ 5598666 (-)
G136357 NA other upstream 773519 5701679 ~ 5703911 (-)

Expression


Co-expression Network