trim54 (trim54,LOC107602207,LOC107675051,LOC107598093)


Basic Information

Item Value
gene id trim54
gene name trim54,LOC107602207,LOC107675051,LOC107598093
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19601532 ~ 19615202 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219785.1
AGTTTGGACAGTAACCCAAGCCAGTACAAACAGCCCAAATATATCCACAGTCACTCTGCGGTTGGGGATTGAGTGGGCATCTGGATGCAGACTGTGGCTAGAGAACAGACCAAAGAataacagaaggaaaaaaaagtttaggagCTTTGTTTTATCTTTGTCTGGGATGAACTTTACTTTGGGCTTCAAACCAGCGATGGGAGATTCAAGTTCAGTGGAGAACTTAGAGAAACAACTCATTTGCCCCATCTGTCTGGAGATATTCACCAAGCCTGTGGTCATCCTACCCTGCCAGCATAATCTCTGCAGGAAGTGCGCCAATGATGTTTACCAGGCCTCCAACCCTCTTTGGCAAAACCGTGGCCCTGTGTCTGCGGGGGGACGTTTCCGCTGCCCGTCATGTCGTCATGAAGTGGTATTGGACCGGCATGGAGTATATGGGCTTCAGAGGAACCTGCTAGTGGAGAACATCATTGATATCTACAAATCAGAGTCTACCAGGCCACTCCTGCCCAAAACAGAGCAACAGCAGCTGATGTGCGACCAGCACGAGGAGGAGAAGATCAACATCTACTGCCTCACCTGCGAGACACCGACATGCTCCATGTGCAAAGTGTTCGGGGCTCACAAAGACTGTGACGTGGCTCCGCTGCCAGACATTTACAAGAGACAGAAGACGGAGCTGAGTGATGCCATAGCCATCTTGGTGGCCGGAAATGACAGAACACAAGCCCTGATATCACAGATGGAGGATATTTGTAGGACAGTCAAGGAAAATGGTCATCGGCAGATGCAGTACATCTCAGATAAGTTTGATGAACTTTACGCCATCCTAGAAGACCGCAAAAGGGAACTAATAGAGACTGTTGGCCGTGAGCAGGACCAAAAACTGAGCCGTGTGCGCTCCCTCATCCGTCGCCACGGAGATCACTTGGAGATGTCTGTCAAACTTGTGGAGACAGCCATACAGTCCATGGAAGAACCTCAAATGGCTGTGTTCCTGCAGAGCGCAAAGGAAGTGTTCAAAAAGATCACAGACACTGCCAAGGCTTCCAACATTGAGCGGACGGAGGCGGGCTACGAGAGCATGGCCCACTTCATCATCAACACGGAGAACGTGGCCGACACGCTGAGAGGCATCGACTTCCAAACAGGTGAAGATGGGGAAGACAGCGGTGATGAAGGCCCTGAAGACCTGACCACCTCACCTGGTCAGGCTGGTGAATCAGGGAGACGcatataacttatttttaaaccCAAGGGTATTTCCTGTGCTGACTTAAGAGAGACTATGAGGAGGTTTTCTTTAATCCTTTCAACATGGCGAGAGCTTCTTTCATCTGGTATTTTGTGTTCCTAAAAGTCTGAGCTATAGTTCAGTAAGAATTACAAATTTCTTCATAGCTTCTACATCCTGGATGTTCATAACGATTCTATGTATGATGctatttttggtgttttttttaatcttagaATGAGCTGAGGACATAggaaatctgaaaatatttgtggtttgttcaagtgtgtgtgtgtgtgtgtgtgtgtgtaaatcaccatttaacatttaaaggggtcagcaatgtttttgaaagactcttatgctcaccga
>XR_006247245.1
CAGTTTGGACAGTAACCCAAGCCAGTACAAACAGCCCAAATATATCCACAGTCACTCTGCGGTTGGGGATTGAGTGGGCATCTGGATGCAGACTGTGGCTAGAGAACAGACCAAAGAataacagaaggaaaaaaaagtttaggagCTTTGTTTTATCTTTGTCTGGGATGAACTTTACTTTGGGCTTCAAACCAGCGATGGGAGATTCAAGTTCAGTGGAGAACTTAGAGAAACAACTCATTTGCCCCATCTGTCTGGAGATATTCACCAAGCCTGTGGTCATCCTACCCTGCCAGCATAATCTCTGCAGGAAGTGCGCCAATGATGTTTACCAGGCCTCCAACCCTCTTTGGCAAAACCGTGGCCCTGTGTCTGCGGGGGGACGTTTCCGCTGCCCGTCATGTCGTCATGAAGTGGTATTGGACCGGCATGGAGTATATGGGCTTCAGAGGAACCTGCTAGTGGAGAACATCATTGATATCTACAAATCAGAGTCTACCAGGCCACTCCTGCCCAAAACAGAGCAACAGCAGCTGATGTGCGACCAGCACGAGGAGGAGAAGATCAACATCTACTGCCTCACCTGCGAGACACCGACATGCTCCATGTGCAAAGTGTTCGGGGCTCACAAAGACTGTGACGTGGCTCCGCTGCCAGACATTTACAAGAGACAGAAGACGGAGCTGAGTGATGCCATAGCCATCTTGGTGGCCGGAAATGACAGAACACAAGCCCTGATATCACAGATGGAGGATATTTGTAGGACAGTCAAGGAAAATGGTCATCGGCAGATGCAGTACATCTCAGATAAGTTTGATGAACTTTACGCCATCCTAGAAGACCGCAAAAGGGAACTAATAGAGACTGTTGGCCGTGAGCAGGACCAAAAACTGAGCCGTGTGCGCTCCCTCATCCGTCGCCACGGAGATCACTTGGAGATGTCTGTCAAACTTGTGGAGACAGCCATACAGTCCATGGAAGAACCTCAAATGGCTGTGTTCCTGCAGAGCGCAAAGGAAGTGTTCAAAAAGATCACAGACACTGCCAAGGCTTCCAACATTGAGCGGACGGAGGCGGGCTACGAGAGCATGGCCCACTTCATCATCAACACGGAGAACGTGGCCGACACGCTGAGAGGCATCGACTTCCAAACAGGTGAAGATGGGGAAGACAGCGGTGATGAAGGCCCTGAAGACCTGACCACCTCACCTGGTCAGGCTGGTGAATCAGGGAGACGcatataacttatttttaaaccCAAGGGTATTTCCTGTGCTGACTTAAGAGAGACTATGAGGAGGTTTTCTTTAATCCTTTCAACATGGCGAGAGCTTCTTTCATCTGaATGAGCTGAGGACATAggaaatctgaaaatatttgtggtttgttcaagtgtgtgtgtgtgtgtgtgtgtgtgtaaatcaccatttaacatttaaaggggtcagcaatgtttttgaaagactcttatgctcaccga

Function

symbol description
trim54 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in Z disc. Predicted to be active in cytoplasm. Is expressed in gill; male organism; and muscle. Orthologous to human TRIM54 (tripartite motif containing 54).

NR:

description
tripartite motif-containing protein 54-like isoform X1

GO: NA

KEGG:

id description
K10653 TRIM54, MURF3; tripartite motif-containing protein 54

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219785.1 True 1609 mRNA 0.47 9 19601532 19615201
XR_006247245.1 False 1480 transcript 0.49 10 19601532 19615202

Neighbor

gene id symbol gene type direction distance location
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 47205 19542377 ~ 19554327 (-)
si:ch211-245h14.1 NA coding downstream 85009 19514080 ~ 19516523 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding downstream 114182 19455804 ~ 19487350 (-)
nsl1 nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087 coding downstream 342834 19256688 ~ 19258698 (-)
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding downstream 368715 19179809 ~ 19232817 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 1559 19616761 ~ 19628027 (-)
cad cad coding upstream 13584 19628786 ~ 19647088 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding upstream 33986 19649188 ~ 19651129 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding upstream 211898 19827100 ~ 19849045 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 454204 20069406 ~ 20071277 (-)
G140175 NA non-coding downstream 152820 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 260472 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 350742 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 441375 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 557618 19040790 ~ 19043914 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 121738 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 185320 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 290429 19905631 ~ 19909647 (-)
G140304 NA non-coding upstream 533078 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 651466 20266668 ~ 20268266 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 297564 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 338580 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 345260 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1154583 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 1251410 18343463 ~ 18350122 (-)
G140227 cad other upstream 442422 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 446400 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 795427 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 1019094 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 1352986 20968188 ~ 20975755 (-)

Expression


Co-expression Network