LOC122324982 (si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605)


Basic Information

Item Value
gene id LOC122324982
gene name si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19649188 ~ 19651129 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219786.1
accaACATACTCTAGGTGACAggtcaaacaaaaaacattgtgaCTGGAAACTAACAGATGGGGCTCTGACACATACAGAACTACTAGAACAAGCTGTACCTGAGATCCAAACCTACTGAAACCTGCTCAAGGAGAAGAACCACCAAAAAAGCTAGTTTAAGTGAAAACACAGGAGAAATAATTACTTTCTGTGCCTACTGGACCAGAGACATGCACAACCAGGTTATTCAGAGCCTTGAGAAGGTACTGCACAACCTCTGGTTCATAAAAGAACTTTCTGAGCTCATTCTTGGAGCAgccttttacttttttgaagCCTTTGTTCGACTCTTTATTCCACACTGCAAGAAAAATGTTGAAGGAGAGATAGCCTTGGTGACTGGAGCTGCGAATGGCATTGGAAAGCTGATTGCGAAAGAACTTGGCCACCATGGAGCAACATTAGTCTTATGGGATATCAACTCAGATGCACTGGACAAAACAGCCAGAGAATTAAAGCAAGTATTGGATGTCCGTGTGTATGCCTACACCTGTGACTGcagcaaaagaaatgaaatttaCAAAGTTGCTGAACtggTTAAAAGGGAGGTTGGAGATGTGTCAATTTTGGTAAACAATGCAGGCATGGTAACAGGCAAACATACTTTCGTAGAAGCCCCTGACAGTCTAGTGGATAGAACACTAAGGGTCAATGTTGCAGGTCATTTCTGGACTTACAAGGCATTTCTCCCAGCTATGTTGCAACAAAATCATGGGCATCTGGTCTGCGTGGCATGCCATGGAGGGTTGTTTGCAATGAATGGCCTTGCAGATTATTGTGCAAGCAAGTCTGCAGCAGTGAGCTTTGCAGAATCTGTTGCATTGGAGCTGCTTGTCCTTAAAAAGGAAGGAATCAAAACAACAATAGTGTGTCCCTatctaataaacacaaaaatgtttaggGGATGTCAAACAAAGAGACCATCCTTTCTTCCAATCTTGGATCAGAGACATGTAGCAAAACAAATTGTGGATGCAATACTACAGGAAAAGACGTATTTGTTGTTACCCTTAAGTCTACATTTCTTGATGGCACTAAAGAGTCTCATGCCTGCCAAACTGGGCATCATCTTTGTGAACTTCATTGGTGGGATGGATCTGATGGATCACTTCAGGGGGGTTCCTGTACCCATCATCAGCTACAAAAGCCTCAGCGCCAACGAAATGACAGTGTCAGTGATCCACAGACCACCCTTATCTATTACGACTAAAAATCACCAGTGAGCTTAAATGCATGATCAGTCTATACTCAGTCTATAAAATTATTGCAGAGctgtgaataaatacatttttccttaA
>XM_043219787.1
accaACATACTCTAGGTGACAggtcaaacaaaaaacattgtgaCTGGAAACTAACAGATGGGGCTCTGACACATACAGAACTACTAGAACAAGCTGTACCTGAGATCCAAACCTACTGAAACCTGCTCAAGGAGAAGAACCACCAAAAAAGCTAGTTTAAGTGAAAACACAGGAGAAATAATTACTTTCTGTGCCTACTGGACCAGAGACATGCACAACCAGGTTATTCAGAGCCTTGAGAAGGTACTGCACAACCTCTGGTTCATAAAAGAACTTTCTGAGCTCATTCTTGGAGCAgccttttacttttttgaagCCTTTGTTCGACTCTTTATTCCACACTGCAAGAAAAATGTTGAAGGAGAGATAGCCTTGGTGACTGGAGCTGCGAATGGCATTGGAAAGCTGATTGCGAAAGAACTTGGCCACCATGGAGCAACATTAGTCTTATGGGATATCAACTCAGATGCACTGGACAAAACAGCCAGAGAATTAAAGCAAGTATTGGATGTCCGTGTGTATGCCTACACCTGTGACTGcagcaaaagaaatgaaatttaCAAAGTTGCTGAACtgACTTACAAGGCATTTCTCCCAGCTATGTTGCAACAAAATCATGGGCATCTGGTCTGCGTGGCATGCCATGGAGGGTTGTTTGCAATGAATGGCCTTGCAGATTATTGTGCAAGCAAGTCTGCAGCAGTGAGCTTTGCAGAATCTGTTGCATTGGAGCTGCTTGTCCTTAAAAAGGAAGGAATCAAAACAACAATAGTGTGTCCCTatctaataaacacaaaaatgtttaggGGATGTCAAACAAAGAGACCATCCTTTCTTCCAATCTTGGATCAGAGACATGTAGCAAAACAAATTGTGGATGCAATACTACAGGAAAAGACGTATTTGTTGTTACCCTTAAGTCTACATTTCTTGATGGCACTAAAGAGTCTCATGCCTGCCAAACTGGGCATCATCTTTGTGAACTTCATTGGTGGGATGGATCTGATGGATCACTTCAGGGGGGTTCCTGTACCCATCATCAGCTACAAAAGCCTCAGCGCCAACGAAATGACAGTGTCAGTGATCCACAGACCACCCTTATCTATTACGACTAAAAATCACCAGTGAGCTTAAATGCATGATCAGTCTATACTCAGTCTATAAAATTATTGCAGAGctgtgaataaatacatttttccttaA

Function

symbol description
si:dkey-221h15.4 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be active in lipid droplet. Orthologous to human SDR16C5 (short chain dehydrogenase/reductase family 16C member 5).

NR:

description
PREDICTED: epidermal retinol dehydrogenase 2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219786.1 True 1338 mRNA 0.42 6 19649188 19651129
XM_043219787.1 False 1203 mRNA 0.42 5 19649188 19651129

Neighbor

gene id symbol gene type direction distance location
cad cad coding downstream 2100 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 21161 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 94861 19542377 ~ 19554327 (-)
si:ch211-245h14.1 NA coding downstream 132665 19514080 ~ 19516523 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding downstream 161838 19455804 ~ 19487350 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding upstream 175971 19827100 ~ 19849045 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 418277 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 522419 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 579846 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 607124 20258253 ~ 20263850 (-)
G140175 NA non-coding downstream 200476 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 308128 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 398398 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 489031 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 605274 19040790 ~ 19043914 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 85811 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 149393 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 254502 19905631 ~ 19909647 (-)
G140304 NA non-coding upstream 497151 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 615539 20266668 ~ 20268266 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 33986 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 345220 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 386236 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 392916 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1202239 18406027 ~ 18446949 (-)
G140227 cad other upstream 406495 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 410473 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 759500 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 983167 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 1317059 20968188 ~ 20975755 (-)

Expression


Co-expression Network