slc30a2 (slc30a2,slc30a3,LOC107598103,LOC107675070)


Basic Information

Item Value
gene id slc30a2
gene name slc30a2,slc30a3,LOC107598103,LOC107675070
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19542377 ~ 19554327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219808.1
TCCGCTTTTTCCCCACTGGTCACTGAAGCTGCACAGGACCATGGATCCTCCACAGTCTTCAGAGAAATCGCATCTCATCAACGAAAGAAATGCCAAAATATACTCCTTAAAACTTAACAGtgaatTCTCAGGTTCCAAAGAAAGTTGTCCAAACCTGCCTTTGGGAAATGGCGATATGGCTGGTGCTATTGAGCTGAAGAGGCCCGTTGCAACTCATTGCCACGGAAAAAAAGCAGCCTTCGATGAGGGCCACGAGAAACTCATTGCAAAGAAGAAGCTGTACATCGCTTCCATAGTCTGTCTGGTTTTCATGATCGGAGAAGTTATAGGTGGCTACCTAGCACACAGCTTGGCCATCATGACCGATGCAGCCCACCTTCTGACAGATTTTGGCAGTATGATGGTCAGTCTTTTCTCCTTGTGGATCTCCTCGAGACCACCAACCAAGATAATGAACTTTGGCTGGCACAGATCAGAGATTCTGGGAGCCCTGATATCTGTGATGTCCATCTGGATCGTGACTGGGGTGCTTGTGTATCTTGCCATTGAGAGGATAGtaaaaaatgattatgaaaTCGAAGGCCATGTGATGCTCATCACTTCAGGTTGTGCAGTCGTGGTCAACATCATAATGGCATATATTCTACACCATTCCACGACCTTCCACAGTCACGGTTCAGGCTACCACAAGATTGATGAGAATGGGATGAGCCCTGTCGGCCATGGCCACTCCCACAGCCTCTTGGGTAATCATGGGAACACCAGTGTcagagcagcatttattcatgttttgggGGATCTCTTACAGAGCTTTGGAGTGATGGTGGCCGCCATCATTATCTACTTCAGGCCAGAATACAAAGTAGCTGATCCCATTTGCACTTTCCTCTTCTCTGTATTCGTCTTGGGCACCACAATTACCATCCTGAGAGATGTCTTCCGCATTCTCATGGAGGGGGCACCCAAAGGAATAGAGTTTAATTCAGTGAAGGAGGTTCTTCTGTCTCTGAAAGCAGTGAAGGCCATGCATAGCCTACATCTATGGGCTCTCACCCTTGGCCAGAGCCTGCTGTCTGTTCACATAGCTATTGAGGAGAACGCTGACCCTCACAGTGTCTTAAAGGAAGCCACTGAACTCCTCCAGACCAAATTTGGCTTTTACAGCACAACCATTCAAGTGGAGCCTTATTGTGAGGACATGATCCACTGCGCCCAGTGCCAGGACCCTACGGAATAAGTTCTCCGAGAGCATCGGTGAGAGAAGGCTGCctgtataaaatgtatgcacacatattaAGCTTCATTGAGGGTCCAAGCCAGAAATGGAAACACTGTGCAAATGCATCATCTAGCCTACATATCATTACGAATATGTACAcgccaaatgcatttttatcgaATAacaagaaaatttaaaaaaagagagatttcaCACTGTGCCATCTTAAAAGTGCATCTTCAGCATCACAAATGCATTGGTTTATGGGAGGAATagctttaaaatgaagttttgatgtttagttttacatactgtatgcaAAGATGAACTGAATTGAGCGGAGGCCTGGAGGCATCACTGTGAGCCTTTTTATTGTGACTTTGCTAGGTTTTGCTTGGCCGGCTGGCATCGTACATTACCGCAGAAGTGTACTGTAATTGCCTGTCCGTGGTCTTGGGAGGGTAAAAGATGGGTATTGACATGACTtccttaaaaacaattaaaataggGTTTATTATGCCCCAGCCAGCCTTGCGTCTGCTGTCAGCATGGTTCTCTAATTAATGTGAATGTTCGCCAAACTGCGGCATGATGTTGTAGGGCTTAAAAAGAGATTGTGCTCAAGTGTAATTATGGATTTTGTTGGCGATCTCTCACTAATGTCTTGTCTCATGGTACAATACTATTTGCAAAAGCAAGCGGGTGATTAACTCTGTTCTTCCTCACTAGCTGCGATAGTGAAGGTGCTGTTGTGGTTTTCATGTGGCTTTAAAAGAACATCGGAGACAAAATGGCTGATGAATTAAACAACTAAGAGTGAtattaaaggtgaagtgtgtaactATCCTAGTTTCATGCACAGAAATTAATACAAGTAAAACACTGGTAAGATATCCCAACAGATTTATTGGTggtgaagctgaattttcagcagactTTAAAGGACTAaaccaaattttaaaatatgaataaattgcaTGATTAAAATAGACAATATACCCCTGATTGATTATTTGATCAGACGttcaaaagtaatataaaatgcaattttatgcCATATTTAGATCGTAAATGTAATACCAACATCCTAGCTAACACGTTTCTGGAAGtgtactacatttaaaaatgtacagtatgcaaCAGAGAGCTGTACTGTCTCCCagcattaatgcaattaaattgaCCTATGGTAGCAactatcatttttataatttccgcctcattatttgaaaaaaatgaagaaaagaaagatttaaaCACTGATTAAAACTGTAGAATACACAGTAATAAATAAGCATAGCCAATTTTAAAAAGTGGACACTTGTTCAGACTCAAATCATTAATTTTGCAATCTTAGATGGCTGTAGTTGTGgcacagaaattacacacttcaccttgcTAGGATCCTGTTGTGGGTCACTCCGGTTTCTCAAAGTCAAGCATGCTTCACACCGTGCATATGTTTGTCTTCAGGCTCTGTCCAGCTGTAGTCTgcgatgacacacacacacacacacacacacactcgttttGCACAGGATTTCCATCTCTGATCTCGGTGCCGCCACACTGCCGCAATGACTCTATGACATTCCAGCAAGTGGTGCAACACGTTTCTCATGTCTCTGTAGTTCAACACTGAGCTCATGGCAGTAACATTCAATAATAAAGCACATGATTTCTGAATGtcttttaagaaacattttccatttaaaccACGGTTTTCTTTCCATTCTTAGTTTTGTTAACAACTTTCAGAGCCCCTAAATGTGCACTAAtgttcatttacattatatgtgaAGATTTTATATAGACAAATATGATTTTAGACTAATAAAAGACGCACTTGACAGatgattattgtgttttaaagcttGCGTGTACTGATAAAATGTAGCCATTGTGATCTGTTGTGGCGTTGTGAAAGAGTTTTAAGAGTTtgctttgcatgtttttttttttaagtgactgTGATTTAGATGGTAATTGATCAACCTAAGGACCTCGCCATCTCACTGAAATTCATTAAATTCTATATTTTGTCTATTTGTTttgataaaatgaatatatattttaaatgtgaatatcaCAGTCATTTATAAAACAAGAGAGAGCGAACAAAATGATAATATGAAAGGACCAATGCATAAGCAGTATATTTTTGATAAAGTTGGGGTTGATGTGCCAAAGCTCTGcattaagatttttacttttagagGGACCTCAGTAACAATTTACTGCTATTAGGAGTCATTCCTGTTATGCTGGACATTTAAGTACTTGTATTAAAGgggatttatatatatatataaatgaactttCAGCGATTGCAAGGGATTAGGAGTTTCCTTACGTTTAGTTACTGGTAACACGAGCGAAATTTCACTGCCAGTTGTCAATAGATGAAGCACCACTCGGTAAAAAGACTTGGGGCGAActggaaaattttaaaaaacgatCTGTGTGACCTTTCACCCTCAGGTAAAACTTCCGGTCGCGTGATGACTGGATTAACCCGCGAAATTTCGTTGAGCGACGGTACAGTGACTTAAATAACTTAAGCGTCTTATATCATTAGGTATATTTGACGATTTTAGCCATATAttttagagagagaaaaattcAGAAAATCTAACGCGAATAAAGTACTTACCGCTTTCGCTGTTTTCCCACTTCCTACATGATGTCGCGAGggattagctttttttttttttttttttttgaaaggctctaattacagagaaaaactatacatttgttattaaaataacacaggACACACCTGAAATATttccttattaaaaatataaaataataataataataataattattattaaaaaaattcacatggaaagcataataaaataaaactaatataatttaaatcttAACAAATGtgagtatattttatttagtatgatTAAAACACatgtgctgaaaatgtgctGCATAACAGGAATAACCTGTATGTGTCCATACACTTCTGACTTTAagggtttttaattaaatgctgaCCAAGgaccaacaaaacattttgatccaggaacatgtcttactacttgcatttaaaaaccaaaaaaaacaacaaaaacataaggTTGTATAACTTATGTAAACTTACATGTCTGGGAACCAATAACcagatgcttttaaatgaaagtaaaatgcaGAGGATTCCTGTTAGTCATACAACAAAACAGATGAAAAACCTCCCAGTATTATTTGCTAGAATAAGTCAGAGACTTAGTTTGAATATTGCACACACAGCATCACAACTCAAAAGTTAAGATGAATATGATAAATCCAAAATCAATTTCATATGCAGGTGCACTCAACCCTTTGAAGCTTCAAAACTGATAGCAGAGCGTGAGATGGTACATCATCGGTCATGTTTTTGACATGTTCTGCATTTTGTGTCATGAACTAAAAGACATTAATGTTGTTCCGTGGAAAGTGTAAATAATCTACATGATTTTTTTGTCGTGCCTCAgatttgtgtatgtgtacagtatataaatttGCTTCTTGTATAAACTTGTCCGTCTATAAAAGTcctgtgtgtaaatgttttatccTTTATGTGACCGCATAAAGCCACTATATAACCAGAAACTAATGatggatatttaatttttacatgcttttaattttatatgt

Function

symbol description
slc30a2 Predicted to enable zinc ion transmembrane transporter activity. Predicted to be involved in regulation of sequestering of zinc ion; response to zinc ion; and zinc ion transmembrane transport. Predicted to act upstream of or within zinc ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in hindbrain; neurons; and spinal cord. Orthologous to several human genes including SLC30A3 (solute carrier family 30 member 3).
slc30a3 Predicted to enable zinc ion transmembrane transporter activity. Involved in regulation of sequestering of zinc ion. Located in late endosome and synaptic vesicle.

NR:

description
PREDICTED: zinc transporter 2-like

GO:

id name namespace
GO:0071577 zinc ion transmembrane transport biological_process
GO:0072511 divalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005385 zinc ion transmembrane transporter activity molecular_function

KEGG:

id description
K14690 SLC30A3, ZNT3; solute carrier family 30 (zinc transporter), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219808.1 True 4879 mRNA 0.38 8 19542377 19554327

Neighbor

gene id symbol gene type direction distance location
si:ch211-245h14.1 NA coding downstream 25854 19514080 ~ 19516523 (-)
itpkb itpkb,LOC107602213,LOC107676256,LOC107716604,LOC107727648,LOC107598056,LOC107675080 coding downstream 55027 19455804 ~ 19487350 (-)
nsl1 nsl1,LOC107553458,LOC107676260,LOC107558949,LOC107675087 coding downstream 283679 19256688 ~ 19258698 (-)
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding downstream 309560 19179809 ~ 19232817 (-)
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding downstream 376369 19096279 ~ 19166008 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding upstream 62434 19616761 ~ 19628027 (-)
cad cad coding upstream 74459 19628786 ~ 19647088 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding upstream 94861 19649188 ~ 19651129 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding upstream 272773 19827100 ~ 19849045 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 515079 20069406 ~ 20071277 (-)
G140175 NA non-coding downstream 93665 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 201317 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 291587 19224380 ~ 19250790 (-)
G139903 NA non-coding downstream 382220 19159838 ~ 19160157 (-)
G139871 NA non-coding downstream 498463 19040790 ~ 19043914 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding upstream 182613 19736940 ~ 19740363 (-)
G140248 NA non-coding upstream 246195 19800522 ~ 19801668 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 351304 19905631 ~ 19909647 (-)
G140304 NA non-coding upstream 593953 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 712341 20266668 ~ 20268266 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 238409 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 279425 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 286105 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1095428 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 1192255 18343463 ~ 18350122 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 47205 19601532 ~ 19615202 (-)
G140227 cad other upstream 503297 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 507275 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 856302 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 1079969 20634296 ~ 20658380 (-)

Expression


Co-expression Network