laptm4a (laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288)


Basic Information

Item Value
gene id laptm4a
gene name laptm4a,LOC107678852,LOC107726758,LOC107603102,LOC107743288
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22739633 ~ 22744277 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219846.1
CCCCATTGTTTCGCATCCATCAGGGGGAGTTTTGCCCGAACGATCGAGAGCTGCTGTTGTAGCTGCTGTTTTTGACAGGGGAGACTCATCTCGTCTCTTTTTCTCGATGTTTCTTCAAAGCACCGAGAACGACATGCGTTTCAAACCGTCTCGAGACCGACTTTACAGCGCTCGCTGCTGCGGCTGCTGTCACGTGCGGACTGGAACCATCATCCTGGGTACCTGGTACATGGTGGTGAACCTGTTGATGGGTATTCTGTTGACTGTGGCAGTAACTCACCCCGAGAACGTCCCTACTGTTGACCTACAGTATGAAGTTATCGAGCATTACTTTGCCTCAGACAGGATGTCAGAGAATGCTTGTGTGGGCTTTGCCATCTCCCTCCTTATGCTCACCATTAGTGCCATGATGGTGTATGGAGCCATTACTAATCGTGATGGCTGGCTCATCCCGTTCTTTTGCTATCAACTATTTGACTTTGCTCTGAGCTGCCTGGTGGCCATCAGCTCCCTCACGTACCTGCCCAGAATCAAGGACTACCTGGACCAGCTGCCGGACTTCCCATACAAAGACAACCTTCTGTCTCTGGACTCCAGCTGCCTCCTTCTGTTTGTGCTCGTCTTCTTTGCCATTCTCATTGTCCTTAAGgcttACCTCATCAATTGTGTTTGGAACTGCTATAAGTACATAAACAACCGGAACACTCCAGAGATTGCCGTCTATCCTGCTTTTGAGACCCCACCTCAGTACATCCTTCCCACCTATGAAATGGCCATGACAATGCCAGCGAAGGAGCCTCCTCCTCCTTACATGCCAGCTTGAATTCCCCTGACTGGTTTCTTCAGTAAAAGCCAGTGCAAACACCCATCTTTGCCTTTCGATCCTGCCTTCCATTTCAACACATGGAGGGCGTTTAGACTCCCAGCGTCCACTCATCACATCAGCAGCTTACATATTTGCATAGACTTATCCATGACTCTTTCTTTCGCATGAACAGCTTGTAACAGTTCATCACTGCAGATCTATTTTTGTAAAACTATAGGAAGTGGCACGGTGTTGGGGAAGAGATCATGTGGTTGTGGcgagatttattttaattacttagTGTTGTATCTGAGATTTGAAATGCCATTCTCTTTTGTGGACATCATGACTCGGGCTCTGCAATAAATTGTGCTTATGACAGCATTATATAGTTCATAGTCAATCACTAATGAAATGATTGTGAGATGGGGCAGACGATCTGCCATCTGAAATTTTTACCAATGAAAGCTTTCACTTTATTTGCCACCTTGAGATCTTTATTTTTCCATGCTTTTCAATGCTGTGTTTTTTCCTAATTGACATGGTAGAGGAAGTATTGTGAAATCTACATTGCCCTACAACTTGGCAGGGCACTTTCATTTAGAATCACCTAAATCTGTTTTGCTAGTTTATTAATCTGTTTAGACAATCCAGTGTGATggttaaaatctatattttttccattgtgtACTTTATTAGTGGACGTAAGACTTTCATCCTTTCAAACGTGAAAGCTCAAAGCACTTTTTATCTTGTTTATATaattagtgtgtgtgcgtgcgtgcgtgcgtgtttgtttttcatccaTTGAAGCATTGTACACCATCATGTTAGCAGCCGTCACAGTGATCTGTATTCATGGTAACTCATGGTAATGCTGGTTAACATGCAAGAGGAATCCTCACATGAACAACAATGATATTGAGTTAAAAAAGGAAACTGCTAGTGCTGTATAAATCAATGgatgcatgttattttattttgtggtctGTTTCTTTTCTTGTACATGTTCTGTAATCGAATTACTTCAATAAACACTTCAAAACAACA

Function

symbol description
laptm4a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Is expressed in adaxial cell; hypaxial myotome region; myotome; pectoral fin musculature; and somite. Orthologous to human LAPTM4A (lysosomal protein transmembrane 4 alpha).

NR:

description
PREDICTED: lysosomal-associated transmembrane protein 4A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K12387 LAPTM; lysosomal-associated transmembrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219846.1 True 1855 mRNA 0.43 7 22739633 22744277

Neighbor

gene id symbol gene type direction distance location
mark3b mark3b,LOC107697167,LOC107743287,LOC107678848,LOC108412004,LOC107726756 coding upstream 1506 22686572 ~ 22738127 (+)
runx2b runx2b,runx2,LOC107678859,LOC107726745,LOC107697170,LOC107603075 coding upstream 77315 22622388 ~ 22662318 (+)
mmut mut,LOC107726757,LOC107697172,LOC107726528,LOC107667609 coding upstream 201772 22518165 ~ 22537861 (+)
mfsd2b si:dkeyp-115a10.3,mfsd2b,LOC107750078,LOC107697177,LOC107603080,LOC107667608 coding upstream 241025 22478061 ~ 22498608 (+)
LOC122325512 klhl29,LOC107667613,LOC107742703,LOC107697176 coding upstream 345199 22285647 ~ 22394434 (+)
ttc32 ttc32,LOC107678832,LOC107743292,LOC107697098 coding downstream 11715 22755992 ~ 22757979 (+)
zpax1 LOC107603073 coding downstream 14082 22758359 ~ 22763879 (+)
mixl1 LOC107743324,LOC107697096,LOC107726752,LOC107678837,LOC107603100,LOC107549665 coding downstream 23558 22767835 ~ 22769876 (+)
LOC122325427 NA coding downstream 43188 22787465 ~ 22789136 (+)
efr3bb efr3bb,ccl33.2,LOC107726755,LOC107678842,LOC107697142,LOC107549699 coding downstream 62882 22807159 ~ 22839446 (+)
G141091 NA non-coding upstream 182131 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 197101 22542136 ~ 22542532 (+)
G141081 NA non-coding upstream 198306 22541118 ~ 22541327 (+)
LOC122324401 NA non-coding upstream 624766 22098405 ~ 22114867 (+)
G141121 NA non-coding downstream 176416 22920693 ~ 22923128 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding downstream 322310 23066587 ~ 23073665 (+)
LOC122324747 NA non-coding downstream 450344 23194621 ~ 23206082 (+)
G141207 NA non-coding downstream 585914 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 644215 23388492 ~ 23408824 (+)
fkbp1b fkbp1b other upstream 221950 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 262859 22471761 ~ 22476774 (+)
G140785 NA other upstream 894932 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 1537671 21168775 ~ 21201962 (+)
G140533 NA other upstream 1637123 21101768 ~ 21102510 (+)
matn3a matn3a other downstream 135 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 98528 22842805 ~ 22860327 (+)
pln NA other downstream 599438 23343715 ~ 23351655 (+)
G141475 NA other downstream 1328594 24072871 ~ 24074423 (+)
G141524 NA other downstream 1695966 24440243 ~ 24493381 (+)

Expression


Co-expression Network