stmn4 (stmn4,LOC107696168,LOC107698365,LOC107599074,LOC107732359,LOC108257558)


Basic Information

Item Value
gene id stmn4
gene name stmn4,LOC107696168,LOC107698365,LOC107599074,LOC107732359,LOC108257558
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18030682 ~ 18036366 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219852.1
AGCTCTTGTATCCGAGGAGCAGCAGGCACAGAGCAAAAGAGAGGGAGGTGAAAAAGAGGATAccagggagagagaaagagacagaaagaaagagaggggggAGATAGGGACAACACCTCATCAAGGAGAAAAGGACAGAGTGAAAGGTTGTAAACAACACACAATACTGCTTAAACATGACCTTGGCAGCATATCGAGACAAGGTGAAGGAGCTCCCTCTAGTGTCACTGCTGTGCTCCTGCATCAGCTCAAACCCTGCGGAAAACCCCACATACAAGGCTGAggATGTGGTGGATCTCAACTGGTGTGTGATCAAAGATATGGAGGTCATCGAGCTGAACAAGCGGGCCTCGGGCCAGGCGTTTGAGGTGATCCTGAAACCCCCCTCTTTTGATGGTGTGCCTGAGCTGAACACATCCATGCCCCAGCGTAAAGACCCCTCACtggaggagatccagaagaaACTGGGAGCCGCTGAGGAGAGGCGGAAGTTTCAGGAGGCTGAGATGTTAAAGCATCTTGCAGAGAAGAGGGAGCACGAGAGAGAGGTCATCCAGAAGGCCTTTGAGGAGAACAACAACTTCATTAAGAACGCTAAAGAAAAGTTGGAGCAGAAGATGGAGGCCAACAAAGAGAACCGTGAGGCTTTGCTTGCCGCTATGCTGGAGCGACTACAGGAAAAGGACAAACACGCAGAGGAGGTGAGGAAGAACAAAGAGCTGAAAGAGGAGGCCTGCCGGTAGAGGAGCGCCTGCTGCGCGGGACTGCTTTGACTATAGTCAAGGGAGATgaagagaaaataaagcaaacgGTAGCCAATACATCTCAAAAAAGGGGACATATTGGACATTGATAATGACAATTTGCAACACACCAAGCTTTTGTGAGGTTTAACAACATCAAAActacttaatattattaaaaaacagaaagataTTGTCTAGATGACAATGCAAGGTGCACTAAGGGTATGTTGCTTGGCAGAGCCCGGAAGGTTGCTTCAGAGAAAAAGAACGAATATACCAAACCGATCTTTAGAAATGACTCGAAGAGGACAGATAGAAAAATTGATGAAGAGATGCTTTTTATAACCTCCATAACCAGTACAGATGAATACGTTAACATAAACTACATATTAAAGTCACACTTCACTAATGGCAGTATCACAAAAGCATCTTTTTCCAAAACACGTGCCATCTAATGAGGCTTTGGCTCATGCTTCTTTAATTAtcatttgatattaatattcaataatAGGGTTTCATAGAACCTCAGGCATGCTTGTGTAATATATTAAGCATCTGTAATCAGGTGACTAGAGGTTTATCTATCACATTATCTGTCACATTTCCAGTTGTGAGgtaaaaatatgatcaaatgaaTACTAGTAAATTCTCATAACCCTCTCAGATACATTAAAAGTGGAGCACAGTGACACTTTAAGCACAactcaaaagcacatttagctttttttcaatcattatatttgtattatgatGCTCATCAGTAGGAAAACACATAAGCGGCATCTCAGAAATGAAGAATGATATCACTCAGGTGTGACAAAAAGATCCTCTTTGGATTTGGGAAATAGTTTTAGATATGAATGGTGCACTTTGCTTTGGCATGTCACTGAGCTTTATTCTAGTCATTTATTTTACGAAGAAATAGAAGTTTGATGTTGGTGTCTGCAGCGTCAGAAGAGCTGTCGTATGTGCAATGCTCAGAATTGTTGTTAATCGACCAGATTTGGTGAGAAAATGGAATGTAAATCCTCCCTGTGTTTGTAATTTCCAGATGACTAAATTCTCTAGTtcgaatcaaataaatgcttctcTTAACTAAA

Function

symbol description
stmn4 Predicted to enable tubulin binding activity. Acts upstream of or within regulation of cell cycle G2/M phase transition and regulation of neuron differentiation. Located in Golgi apparatus. Is expressed in midbrain neural keel; nervous system; and neural tube. Orthologous to human STMN4 (stathmin 4).

NR:

description
stathmin-4-like

GO:

id name namespace
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219852.1 True 1846 mRNA 0.42 6 18030682 18036366

Neighbor

gene id symbol gene type direction distance location
paqr8 paqr8,LOC107698331,LOC107732380,LOC107553447 coding downstream 9106 18018219 ~ 18021576 (-)
LOC122325023 LOC107553448,LOC107732384,LOC107726442,LOC107599077,LOC107696167 coding downstream 13322 18014452 ~ 18017360 (-)
znf395b LOC107698366,LOC107553496,LOC107732419,LOC107696161 coding downstream 17155 18007946 ~ 18013527 (-)
si:ch211-63o20.7 si:ch211-63o20.7,LOC107732427,LOC107726431,LOC107698369,LOC107599081,LOC108439852 coding downstream 35420 17989312 ~ 17995262 (-)
slc25a24 slc25a24,LOC107553450,LOC107732372,LOC107698372,LOC107726490,LOC107696157,LOC107599083 coding downstream 55383 17967096 ~ 17975299 (-)
sccpdhb sccpdhb,LOC107698360,LOC108439827,LOC107553427,LOC107578761 coding upstream 79748 18116114 ~ 18123136 (-)
cnstb LOC107732406,LOC107698361,LOC107719106,LOC107696101,LOC107553493 coding upstream 87265 18123631 ~ 18133228 (-)
kif26bb LOC107732424,LOC107553492,LOC107698359,LOC107719102,LOC107696093,LOC107577345 coding upstream 97822 18134188 ~ 18151673 (-)
lft1 LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102 coding upstream 124894 18161260 ~ 18163325 (-)
fzd3a LOC107732395,LOC107599066,LOC107553488,LOC107719091 coding upstream 178204 18214570 ~ 18231055 (-)
LOC122324448 NA non-coding downstream 123067 17893736 ~ 17907615 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding downstream 230816 17795484 ~ 17799866 (-)
G139565 NA non-coding downstream 236610 17789198 ~ 17794072 (-)
G139387 NA non-coding downstream 414174 17615793 ~ 17616508 (-)
G139386 NA non-coding downstream 414983 17615148 ~ 17615699 (-)
G139591 NA non-coding upstream 50846 18087212 ~ 18107403 (-)
G139651 LOC107696185,LOC107553490,LOC107698357,LOC107719095 non-coding upstream 120435 18156801 ~ 18157647 (-)
G139653 NA non-coding upstream 129760 18166126 ~ 18166731 (-)
G139681 NA non-coding upstream 219492 18255858 ~ 18313605 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding upstream 302908 18339274 ~ 18339510 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 206481 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 602559 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1568466 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1663883 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1925955 16017318 ~ 16104727 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 307097 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 369661 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1218368 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1225100 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 1261868 19298234 ~ 19303968 (-)

Expression


Co-expression Network