esr1 (LOC107737325,LOC107555768,LOC107556167)


Basic Information

Item Value
gene id esr1
gene name LOC107737325,LOC107555768,LOC107556167
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 13671104 ~ 13683267 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219863.1
AAAAGCTCCACACATCAGACTTGACATTTTGTGCCGCTGCTCATATTTGTTTCTTccttaaatgtaatatttaacgCTACAATAGGGCATCTTTGTTcgaatactgaaaaaaaaagagattaagaaaagattaagaaattaagaaagAGACGGAAAAGCAGCCTCACATATCTTAGAAAAACATCACACTTTGTCCTTTCAGCTCAAGGCAGACTGGAAGAGAGAGGAAGggattttttagttttaaggaGGAGTAGGCAGAACAGCGGGGTGGAAGCAAACAGAACAAGGGGAAGAGAGTTTGAAAAAGACAGTgggaggtaaaaaaaaaaaagaaaaaagactgaGCTTAAAAAACGGTCTTTTGGTGGTTGCTTATGAACAGATAGTACCTTAAGTCATGTCGGCTGCGTGTGTGTTTCTGGTGATGTCTGGAGGGCAGACCAGCGGAGAGGCTGCTGGTGCCAGGCAGCGACGCAGGACCTGCTCGAACCCGGAGAGAGAAGATCTGGAGGGACTTTCTTTAGCACCCGCTGCCCACAAACTCTCGCCCATGTACCCTAAGGAAGAGCACAGCGCAGGAGGGATCAGTTCCTCTGTCAACTATCTTGATGGAGCCTATGAGTTCCCGAACTCCACACAGACCTACGGCACCTCGTCCCCAACCGAGCCTGCCTCGGTCGGATTCTACCCGGCTCCCCCGGACCCCCACACGGCCCCTGCTGAAGAACATCTGCAGACCTTAGACACCAGATCCGGCAGCCCTCTTATGTTCGCACCCTCCAGCCCTCAGTTGTCTCCGTACTTGAGCCATCATGGGGGACACCACTCGACCCACCAGGTGTCCTACTATCTGGACACCCCTTCTAGCACTGTCTACAGgtcgAGTGTGGTGTGCTCTCAGCAGACAGGTATTGGTTTGTGTGAGGAGCTGTGCAGCCCCACTGACAGACAGGAGCTGTACCCCGGATCAAGAGCCGCAGGAGGGTTCGATTCAGAGAAGGAGATGCGCTTCTGTGCGGTGTGCAGTGACTATGCGTCTGGCTATCACTATGGAGTCTGGTCCTGTGAGGGATGCAAAGCTTTCTTCAAGAGAAGCATTCAAGGTCACAATGATTATGTTTGTCCAGCAACCAACCAGTGCACTATTGACAGAAACCGCAGGAAGAGCTGCCAAGCATGCAGACTACGCAAGTGTTATGAAGTAGGCATGATGAAAGGagGTATTCGTAAGGACCGCGGAGGCCGCGCTATCAGGTgtgagaggaggaggagcgcTAATGAAGACCGTGTCAAGAGCTACAGTGAGCAGTCGAGCCGCACCGGCCGGAAAACGGCTCCTCCGCAGGACAGGAGGAAGAAGAGCGGCGGCGGTGGGGTCAGCGCTTCATGCATGCCTCCTGACCAGGTGCTGATGCTGCTTCTGGGGGCAGAGCCGCCGGCCGTCTGCTCGCGGCAGAAACACAGCCGCCCGTACACCGAGATCACCATGATGTCCCTGCTCACAAACATGGCTGACAAAGAGCTCGTTCACATGATCGCCTGGGCTAAGAAAGTACCAGGTTTCCAGGATCTCTCTCTGCACGATCAGGTTCAGCTGTTGGAAAGctcttggctggaggtgttgatGATCGGCCTCATATGGAGGTCTATTCATTCGCCTGGAAAACTCATCTTTGCTCAGGATCTCATCCTCGATAGGAGTGAAGGAGAATGTGTCGAGGGGATGGCTGAGATTTTTGACATGCTCTTGGCGACTGTGGCACGCTTCCGTAGCCTCAACCTCAAGCTGGAGGAATTTGTTTGCCTCAAAGCCATCATACTTCTCAATTCTGGTGCATTTTCATTCTGCTCCAGTCCAGTGGAGCCCTTGATGGACAGCTTCATGGTACAGTGCATGCTGGACAACATCACTGATGCCCTCATTTACTGCATTGGTAAATCAGGTGCTTCTCTGCAGCTCCAGTCCCGCCGTCAGGCCCAGCTTCTGCTGCTGCtctcacacatcagacacatgAGCAACAAAGGAATGGAGCACTTATACCGCATGAAATGTAAGAATCGAGTCCCGCTGTATGACCTTTTGTTGGAGATGCTAGACGCCCAGCGGTTCCATTCTTCAGGAAAGGTGCAGAGACCGTGGCCACAGAGTGAGAAAGACCCCCCTTCTACACCAACAACCAGCAACAGCAGCCCCTCCAGAGGTCCTGGAGCCGTGCTGCCCAACACTGCCTGTCACGAGCAGAGTCCAGACCCCTGAGCTGTGTATTAACCAACAACTGAAGAATGTGAAGACTGTGAAGCAGTCAGTGCTGTCTAATAGTCTCTCCTTGTGCCTTATCAAAGTCCACTTTAGATTCTGAAAACCAACCCATTAAAACGTAAAAACGTATCTTTAGAAATGGAAAAGTTAGGTCTTCAAATAAGAACAAGGCTCCCAAACATTATACATCTGTGTTCACGTGATTCATTAgcttaaaaagacattttgaaaaagtgtCATACTTTGGGGAAAAAAGGGCTCTTAGGCCTTTTCGGCAGACTGAGAGACAGATTTATGTAGAAGCTGCtaattcttttcttctttttaaatagcCAACGGAGTGACAGGTTTCACATCATAAACTTATAtgaagggttactccaccccaaaattagcattttgtcattaatcacttacccaaacccataaaagctttgttcgtcttcggaacacaattgaGGATATTTTGGAAGACACTGTCAAAAcgtgtctttcatactttttctgGACCTTTTTTTATCCTAAAAAAGGATTTTTATcctaaatatcttaaattgtgttctaagatgaacaaagcttttacaagtttggaatggcatgggggtaagtgattaatcactacatttttattttggggtggagtaaccctttaagataaacaaacaaaaaaataaagtaaaaaaaaaaaagcaggtggCTCGTGAACTATATCATGAACTAGCATTTCTCCATGTACACGGTTTATCAAGCactattactgtattaaaatcaGACGAGGTTAGAATCAATATTCCACTGAAGAACCCAAGAACTTTATATCTCTGCATCCGTGTTACACATTTTTgatgttactgttattatttgcattatggCAATAATAGTTATGTATAATTACAAGCAGCGCTTAATATAAAGGATCTGAATTGAAACTGAAAACAAGAGTAAAGTTACTCTTggaaaaacaagacaattaaaaaaattatgtgataTATTTTCACAATCAGAGATATGTTTATCAATAAAAGTCACTGCTccctttttaatgttaaatataagtaattttAACTCAAATTGAAGGGAACAGAGCAGCAGTTAGTGGTGACATTAGTGCCATATTTTGTGCTTATTGGTTGGTtaaattaacagaaatgttACATCATATTTTTGCTGTGCTGTAATTGGTTGGCCATGTCAATTGACACGTAAATGCTGATTTCTATAAGCATTGTGAAGACTTGAAATGAATAACAGCCTATAATCACTGGTCTGGTATTCAATACAGGAAGTGACACTGACTGCCTTACTGCCCATACCCAAACGTGTCATATTTTCCCTCAAATCTGTGAATGTGTCAACATTTAGCAGCTATTATATTTGATACTTGAGTTTTATCATCTGTacagtatgttttcattttgaaggaactaaatgtgaaaatgttaattttacttaattataAAGGACAgagttaaaaaaactaaatcactttaaaatgaaacttttaaCTAAACAATGGGAAGATTagaagaatttatatatatatattaaatgaaaagatgtgtctttattGTCAGCATTAGCAAactgtacatacataaataGGCATAGACATTGTAATTATAATgggtttttttcctccacaCTGTCATTGTcataacacacaaaataaagatacagtaagtatataacagtaataaaaagcACACGTCTCTCATA

Function

NR:

description
estrogen receptor

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0032355 response to estradiol biological_process
GO:0071391 cellular response to estrogen stimulus biological_process
GO:0043401 steroid hormone mediated signaling pathway biological_process
GO:0009410 response to xenobiotic stimulus biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005496 steroid binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0030284 estrogen receptor activity molecular_function

KEGG:

id description
K08550 ESR1, NR3A1; estrogen receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219863.1 True 3979 mRNA 0.44 9 13671104 13683267

Neighbor

gene id symbol gene type direction distance location
myct1a myct1a,LOC107737339,LOC107665338,LOC107659222,LOC107555747,LOC107556166,LOC107721271 coding downstream 111709 13555926 ~ 13559395 (-)
serac1 serac1,LOC107555766,LOC107737322,LOC107659155 coding downstream 115679 13548658 ~ 13555425 (-)
si:dkey-12h9.6 si:dkey-12h9.6,LOC107659220,LOC107737319,LOC107665359,LOC107555760,LOC107556127 coding downstream 124060 13538787 ~ 13547044 (-)
capn3b capn3b,LOC107659224,LOC107721354,LOC107665384,LOC107737332 coding downstream 144831 13516657 ~ 13526273 (-)
churc1 churc1,LOC107659227,LOC107721357,LOC107555763,LOC107556164 coding downstream 160586 13508652 ~ 13510518 (-)
armt1 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 coding upstream 1732 13684999 ~ 13689387 (-)
akap12b LOC107721347,LOC107555771,LOC107659213,LOC107711639,LOC107665356 coding upstream 16825 13700092 ~ 13732388 (-)
mthfd1l mthfd1l,si:ch211-266i18.6,LOC107659212,LOC107721348,LOC107665399,LOC107711640,LOC107556131 coding upstream 52002 13735269 ~ 13761950 (-)
si:dkey-25e12.3 LOC107665334,LOC107659167,LOC107721285,LOC107556143,LOC107555748 coding upstream 85333 13768600 ~ 13770849 (-)
exoc2 exoc2,LOC107721345,LOC107659211,LOC107711641,LOC107665386,LOC107555744 coding upstream 97859 13781126 ~ 13804371 (-)
G138232 NA non-coding downstream 155971 13514765 ~ 13515133 (-)
G138221 slc35f6,LOC107721386,LOC107555739,LOC107683918,LOC107737338,LOC107665330 non-coding downstream 173078 13495682 ~ 13498026 (-)
G138217 zgc:153896,LOC107721358,LOC107665343,LOC107737337,LOC107556161 non-coding downstream 192080 13478772 ~ 13479024 (-)
G138159 LOC107556152 non-coding downstream 277509 13388921 ~ 13393595 (-)
G138162 NA non-coding downstream 279761 13385970 ~ 13391343 (-)
G138335 foxq1b,LOC107659165,LOC107721275,LOC107711626,LOC107665328,LOC107555749,LOC107556144 non-coding upstream 147310 13830577 ~ 13832060 (-)
G138351 NA non-coding upstream 166673 13849940 ~ 13850174 (-)
G138399 LOC107711644,LOC107659205,LOC107721344,LOC107602456,LOC107665390,LOC107602691,LOC107555778 non-coding upstream 257961 13941228 ~ 13999349 (-)
G138407 NA non-coding upstream 261993 13945260 ~ 13945737 (-)
G138401 LOC107721343,LOC107721342,LOC107583935,LOC107721341,LOC107659208 non-coding upstream 264861 13948128 ~ 13953887 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 122513 13547276 ~ 13548591 (-)
cracd kiaa1211,LOC107555764,LOC107737310,LOC107665299,LOC107556121 other downstream 223716 13423958 ~ 13447388 (-)
LOC122324483 NA other downstream 406820 13260919 ~ 13264284 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other downstream 1390792 12241801 ~ 12280312 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other downstream 1446834 12222810 ~ 12224270 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other upstream 80068 13763335 ~ 13767824 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other upstream 510466 14193733 ~ 14198528 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other upstream 758266 14441533 ~ 14445925 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 1309832 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 1313858 14997125 ~ 15003202 (-)

Expression


Co-expression Network