rnf144ab (rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108)


Basic Information

Item Value
gene id rnf144ab
gene name rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15438737 ~ 15452011 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219875.1
CGTCTCGGCAACCGCGCGCCTCCATGCGCAGTCAAATGGCGCCTCTCCAGAGAGACACAGCGACCAGTCCGACCAGCTGATGTTAATTAGAGCAGATAGCGCTTCTCTGATATATTAGCCTCTTTCTGTGCTTTGGTTATgtgagctatttttttttttatttgtctgtgaCAAATGTGGACGAATGGGAAGACGTGCTTAGTTGTGCATGGAGCTGATGGCATTCTTATAACGGATTGACAACTAACGTTAATAGATTCATCGTAAGACCTGTGATCAGGGAGCATCTCTTCAGTGTAGTGAGGACAAGAGGCTGTGGTGACTCACTGCATGCTGATTACCAACTTTACATCAAGAGAGATGTACCGATGTCTACTGGACCATAAAATCAGCCCACATCAGCGGTGGCACATAATTCTAGGACATATAAGGCCCAGTCCAACccttatattttcttatatacaaCATGGTGTTTGGATGTATGATTAAATTACAGACCTTCAGTCAAACTCCACTATCACATAAGCATTTATGTATCTTGGCATGTGTAGTGTGTTAAGAAATTCACATTTAAGagtaatatttcttttagaACTTTTTAAAGAGGTTCATTTGCCTCTTTAAGACGCGAGCTGTAACGTCCTGCTGTGGCTAAAAGTAGAATGTTATGAATATATCATACAAATATGCGAAATGTACGAGTGTCATTTAAGATTTATACTTTCTTCTGCAAATCACCAGATTGTACTCCTTCACAGGCCTCATGTTTGACCCACATTGCCTAAAATTTCACATGTTTGTGGACTTCTGATTTTGATTAAATCACATGATCTGCTGtgTCCCAGATCTGCGTACCATGAGCAGCTCTCGCTACGAACCCAGCTGGGATGTGGACCTGGCGCCCCTTCTGTCCTGTAAACTGTGCCTGGGAGAGTTTCCCCTGGAACAGATGACCACCATCTCCCAGTGCCAGTGCATATTTTGCAGTCTGTGTTTGAAGCAATATGTTGAACTCCTCATTAAAGAAGGCCTTGAAACGGCTATTAGCTGTCCAGACTCTGCCTGTCCAAAAAGGGGACATTTGCTGGAAAACGAGATTGAGTTTATGGTGGCTAGCGAGGTCATGCAACGTTATAAGAGACTTCAGTTTGAGCGAGAGGTGCTTCTGGATCCTTGTCGGACCTGGTGCCCATCGTCCTCATGCCAAGCTGTGTGCCAGCTGAATGAATCAGAGGTGCAGCTGCCGCAGCCGGTGCAGTGCCCTCAGTGCAGTCTGCGTTTCTGCTCTGCCTGCAGGGCAGACTGTCACAGCGGCCAGGCATGTCAGGAGAGCGTGCCAATTACCACCTTCCTGCCGGGCGAAAACAGCTCCAATGTTAAGAGTGAGGAGGACGAGGCTCCGATCAAACGCTGTCCAAAATGTAAAGTTTACATTGAGAGAGATGAAGGCTGTGCCCAGATGATGTGTAAGAACTGCAAGCACGCCTTCTGCTGGTACTGCCTGGAGTCATTAGATGATGACTTTTTACTGATCCACTATGATAAAGGACCCTGCCGGAATAAACTGGGTCATTCCAGAGCCTCCGTCATCTGGCATCGGACACAGGTTGTTGGGATTTTTGCTGGCTTCGGTCTGCTGTTACTAGTGGCCTCTCCTTTCCTTTTGCTGGCCACTCCTTTCGTGCTTTGCTGCAAGTGCAAGTGTAAACGTGGCGACGACGACCCTCTTCCAACCTAGACCTCCGTTTCGGCTTCCTGGGATTAATTGATCGAGGATCGGCTGTGATCCCGTCTTGTTCTACTGAGCACACTTTGCAGGTGCATTGGCAAAAGACCCGTCTGTTCGTGAGACTGTTCTTCAGAGTATGCTGACTCGCGTTGAAAGGTGTTACGGAGGAGCGGAGAAGGTTATTGGATGAGCCGGTGAAGTTAAACAGACCTGTAGTGTTTGGAAGCAAACCCTTTTGTTACACATTGTCTTGTATCTCGTTTACTTCACTTTACGTGGTATTAAGGTTAACCAAGCTATTTTCGATGTTGTTGTTGGTGGTGTTTATCCTGAGATATAACGAACACTTGACAGGAAAACGTTTCTTAGCAgtgctttttattaattttctcgTAGCATAGTCACATAACCTTAATATCTCGGTTTCAATTTAATTGCATATGCATGCTGGTGGCCGAGGATGTCTCACTTTCGTACCTCGCACACAGGGGCTTTAATGAGCCTCAGACTACCACTTGCTTTTATATGCTTCCTATACGCTCTTTCATAGGACAGTAAAACCTTGTTCTTCCATTTGAATCTTCTCAGATACTGTACACACACCATAGACGTAGCAGACATGTCACCTGATGCCTTCTCGAAGCTTGTAGGTTTGGGAGTTGCTGAGAGATTTTATTATCATGGTATCAGACAGTGGGTCACATATCAATCACTGATTATAACAGAGCTTTCACAAGCATATCATTAAAGTAAgctaatattttatacatgttGTAAATGATGTCCGCTACACATGCATTCTGTTGACATAACACACACATGttggattttgtttgtttttccaacCCCAGAAGGGTCTTATCCAGAACCTGTTGAAAATGCAACTGCAACCTGCATTACCATGTGCCTGCCAATTTAGGTCAAAGTAATCAGGCCAGTGAGGCTTAACTTCTTACTTTTCAGGTCACTCTAGGAGTtacgtatttatttaatttttgtccttttttttgtttaaatactttGGGAATAATTTGCCAAATGTGATGCGTAAGCCCACGTTCACTGTCTAGCACATTAATAACTAGTTGATGATAAAcctaatttttgtttttgttctttgttaaaAACGGTATGccttttcaatgtttttttttttttttttttaattgtcactaactgtatataatgtgtatttacatgtacatgtttttcacgtttaaatatattattatgctGCA
>XM_043219877.1
CTCGGCAACCGCGCGCCTCCATGCGCAGTCAAATGGCGCCTCTCCAGAGAGACACAGCGACCAGTCCGACCAGCTGATGTTAATTAGAGCAGATAGCGCTTCTCTGATATATTAGCCTCTTTCTGTGCTTTGGTTATgtgagctatttttttttttatttgtctgtgaCAAATGTGGACGAATGGGAAGACGTGCTTAGTTGTGCATGGAGCTGATGGCATTCTTATAACGGATTGACAACTAACGTTAATAGATTCATCGTAAGtgTCCCAGATCTGCGTACCATGAGCAGCTCTCGCTACGAACCCAGCTGGGATGTGGACCTGGCGCCCCTTCTGTCCTGTAAACTGTGCCTGGGAGAGTTTCCCCTGGAACAGATGACCACCATCTCCCAGTGCCAGTGCATATTTTGCAGTCTGTGTTTGAAGCAATATGTTGAACTCCTCATTAAAGAAGGCCTTGAAACGGCTATTAGCTGTCCAGACTCTGCCTGTCCAAAAAGGGGACATTTGCTGGAAAACGAGATTGAGTTTATGGTGGCTAGCGAGGTCATGCAACGTTATAAGAGACTTCAGTTTGAGCGAGAGGTGCTTCTGGATCCTTGTCGGACCTGGTGCCCATCGTCCTCATGCCAAGCTGTGTGCCAGCTGAATGAATCAGAGGTGCAGCTGCCGCAGCCGGTGCAGTGCCCTCAGTGCAGTCTGCGTTTCTGCTCTGCCTGCAGGGCAGACTGTCACAGCGGCCAGGCATGTCAGGAGAGCGTGCCAATTACCACCTTCCTGCCGGGCGAAAACAGCTCCAATGTTAAGAGTGAGGAGGACGAGGCTCCGATCAAACGCTGTCCAAAATGTAAAGTTTACATTGAGAGAGATGAAGGCTGTGCCCAGATGATGTGTAAGAACTGCAAGCACGCCTTCTGCTGGTACTGCCTGGAGTCATTAGATGATGACTTTTTACTGATCCACTATGATAAAGGACCCTGCCGGAATAAACTGGGTCATTCCAGAGCCTCCGTCATCTGGCATCGGACACAGGTTGTTGGGATTTTTGCTGGCTTCGGTCTGCTGTTACTAGTGGCCTCTCCTTTCCTTTTGCTGGCCACTCCTTTCGTGCTTTGCTGCAAGTGCAAGTGTAAACGTGGCGACGACGACCCTCTTCCAACCTAGACCTCCGTTTCGGCTTCCTGGGATTAATTGATCGAGGATCGGCTGTGATCCCGTCTTGTTCTACTGAGCACACTTTGCAGGTGCATTGGCAAAAGACCCGTCTGTTCGTGAGACTGTTCTTCAGAGTATGCTGACTCGCGTTGAAAGGTGTTACGGAGGAGCGGAGAAGGTTATTGGATGAGCCGGTGAAGTTAAACAGACCTGTAGTGTTTGGAAGCAAACCCTTTTGTTACACATTGTCTTGTATCTCGTTTACTTCACTTTACGTGGTATTAAGGTTAACCAAGCTATTTTCGATGTTGTTGTTGGTGGTGTTTATCCTGAGATATAACGAACACTTGACAGGAAAACGTTTCTTAGCAgtgctttttattaattttctcgTAGCATAGTCACATAACCTTAATATCTCGGTTTCAATTTAATTGCATATGCATGCTGGTGGCCGAGGATGTCTCACTTTCGTACCTCGCACACAGGGGCTTTAATGAGCCTCAGACTACCACTTGCTTTTATATGCTTCCTATACGCTCTTTCATAGGACAGTAAAACCTTGTTCTTCCATTTGAATCTTCTCAGATACTGTACACACACCATAGACGTAGCAGACATGTCACCTGATGCCTTCTCGAAGCTTGTAGGTTTGGGAGTTGCTGAGAGATTTTATTATCATGGTATCAGACAGTGGGTCACATATCAATCACTGATTATAACAGAGCTTTCACAAGCATATCATTAAAGTAAgctaatattttatacatgttGTAAATGATGTCCGCTACACATGCATTCTGTTGACATAACACACACATGttggattttgtttgtttttccaacCCCAGAAGGGTCTTATCCAGAACCTGTTGAAAATGCAACTGCAACCTGCATTACCATGTGCCTGCCAATTTAGGTCAAAGTAATCAGGCCAGTGAGGCTTAACTTCTTACTTTTCAGGTCACTCTAGGAGTtacgtatttatttaatttttgtccttttttttgtttaaatactttGGGAATAATTTGCCAAATGTGATGCGTAAGCCCACGTTCACTGTCTAGCACATTAATAACTAGTTGATGATAAAcctaatttttgtttttgttctttgttaaaAACGGTATGccttttcaatgtttttttttttttttttttaattgtcactaactgtatataatgtgtatttacatgtacatgtttttcacgtttaaatatattattatgctGC

Function

symbol description
rnf144ab Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus. Orthologous to human RNF144A (ring finger protein 144A).

NR:

description
probable E3 ubiquitin-protein ligase RNF144A-A isoform X1

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K11975 RNF144; E3 ubiquitin-protein ligase RNF144

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219875.1 True 2967 mRNA 0.43 9 15438737 15452011
XM_043219877.1 False 2394 mRNA 0.44 8 15438738 15452008

Neighbor

gene id symbol gene type direction distance location
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding downstream 19968 15416967 ~ 15418769 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding downstream 68707 15365958 ~ 15370030 (-)
cpsf3 cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862 coding downstream 89516 15343944 ~ 15349221 (-)
taf1b LOC107575862 coding downstream 131454 15302806 ~ 15307283 (-)
klf11a klf11,klf11a,LOC107549098,LOC107693793,LOC107668260,LOC107756587,LOC107601876 coding downstream 140829 15294518 ~ 15297908 (-)
sox11b LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258 coding upstream 67199 15519210 ~ 15521783 (-)
LOC122325442 rps7,LOC107668222,LOC107726469,LOC107601753 coding upstream 390192 15842203 ~ 15845477 (-)
LOC122324514 rps7,LOC107668222,LOC107726469,LOC107601753 coding upstream 467573 15919584 ~ 15922857 (-)
LOC122325615 NA coding upstream 467769 15919780 ~ 15920000 (-)
LOC122325618 NA coding upstream 468270 15920281 ~ 15920501 (-)
G138828 NA non-coding downstream 57768 15370608 ~ 15380969 (-)
G138811 NA non-coding downstream 91456 15331801 ~ 15347281 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding downstream 114457 15323572 ~ 15324280 (-)
LOC122324712 NA non-coding downstream 595001 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 645028 14793495 ~ 14793709 (-)
G138853 NA non-coding upstream 64832 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 232165 15684176 ~ 15711053 (-)
LOC122325621 NA non-coding upstream 270035 15722046 ~ 15722265 (-)
LOC122325623 NA non-coding upstream 270539 15722550 ~ 15722769 (-)
LOC122325616 NA non-coding upstream 271052 15723063 ~ 15723283 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 423468 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 435535 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 992812 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1240209 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1670913 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 390387 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 390887 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 391398 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 392343 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 538138 15990149 ~ 15993645 (-)

Expression


Co-expression Network