gata4 (gata4,LOC107671084,LOC107739180,LOC107557004,LOC107661355,LOC107728131,LOC107564601)


Basic Information

Item Value
gene id gata4
gene name gata4,LOC107671084,LOC107739180,LOC107557004,LOC107661355,LOC107728131,LOC107564601
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25212806 ~ 25223080 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219886.1
AGACTGGGAGGAGTGAGACCGTCCGCCCTCATCATCCCCTGCGCGGTCGGGTCAAGCGGAGGGCGCAGGGTGAACTCAGCCCGGTCACACGCTCCGGTTCCTCGCGAGCGGAGCGCGCGCTCAGCCGCGGACATGTATCAGGGAGTAGCGATGAGCGCCAACCACGGAGCCGCGTCCTACGAGCCCGGTTTCCTCCACAGCGCCGCCCCCGCCGCGGCTTCGCCGGTGTACGTGACGCCCGCCCGGGTCGCCCCGATGCTCCCGGCGCTGCCGTACCTCCAGACGCCGCCGCAGAGCAGCCCGGTGTCCGCGCACTCGGGCTGGCCGCACGCGGGCGCGGACGCGGTCGCCTCGTACAGCTCCGCCGGCGGCCAGCATCCCCCTCCGGTCTCCAGGTTCGCGTTCTCCGCGAGCCCTCCGTCGAGCTCCGGGGCCGCGACGGCGAGCTACTCCGGCCCGCTGAACATCTCCGCCGGCGGGAGGGAGCACTACGGGTCCCGCGGGCTGAGCGGATCCTATCACGGCGGATACCCGGCCTACGTGAGCCCCGGCTTGGGAAGCTCTTGGGCGGCGTCGCACTTTGACAGCTCGGTTCTGCACAGCCTCCAGAGCGGCGGAGCGGCCGGTGCAGCGCGGCACCACGGCTTAGAGCTGCTGGATGATTTCGCTGAGGGTCGTGAGTGTGTGAACTGCGGGGCGATGTCCACTCCTCTGTGGCGGCGGGACGGGACGGGTCACTATCTGTGTAACGCCTGCGGTCTCTATCACAAGATGAACGGGATCAACCGGCCCCTCATCAAACCCCAGAGACGACTGTCTGCGTCCAGACGGGTCGGTTTGTCCTGCACTAACTGTCAGACGACCACGACCACTCTCTGGAGACGAAACGCAGAAGGAGAGCCGGTCTGTAACGCCTGCGGACTCTACATGAAACTCCACGGGGTTCCTCGTCCTCTGGCCATGAAGAAGGAGGGCATTCAGACCCGCAAACGCAAACCGAAGAACATCGGCAAGTCCAAACCCGGGTCATCTGAAGGTCAGACGCCGTCCGGAGCTTTGAGCTCCAGTCCCTCAGAAGAAGCTCGACCCATAAAGACAGAGCCGGAGACAGCATCTCtatacacacaccacaacatgaacacagcgGTCTCCGTGTTTCcgccgtacacacacacacacacaccagtctcAAGCTCTGCTCTCAAGCTTTCTCCGAGCGGATCTTCCAGCTCCAAAAGCGAGGTGTGGAACAGCCTGATCCTGGCATGAGAAGAAGCGAGGTCCTCGTGATGAGAGCGTCACTCCAGAGACGAAACCAAGACGCACAAATCTCTGTGGAAAGACACTGTACGTCCAGTGAGACCCGAGAACCAAAGCAGGAACCCTTCGGTCCCAGAAGATCACGAGAACCTCACATAACCGGAGTGTTCCGGATCACGGCCTGATGGACTCGTAGCATGTGCTTCACTCatctttaagacttttttttcatctcttttaaacCGCTGGAGTGGCATTCAGTTGCTGTAAATAAACGTGTTAGAGCtatagttcacgcaaaaattaaattttgcttCTCGGCAATGgaagtggatgggtgccgtcagaaagacaAAACaccaaactaatccagcattaagcattttttcatctaaaacacataatccataataaccgATGAACTGGATTACTCTGATGCTTTCGGGCGCTTTTTtgcattctgacggcacccatccgcaCGCATTACCGAGACACATTTCTACAGATCACCTTGgatgtaatttttgggtgaaccgtttcTTTTTCCCGCAGGAAAACAGCACACATGGATGAAAACGTTAACTTTTCCCTCTTCAGAAGCCCGTAGCACTCCTGCTGTATTTCAATgcataattctttttattttttctcacacTATATCTGCagggatgcatttatttagttttttatttaatgaacattATTGGTTATTCCTGCTCACGTTTCACCTGACCTTTGTTTGCGAAAAATTCTAATTCGGGCTTGTTTTGCGATTTCGGTTCTGTCAGGACTGTCGAGTTGACCAGAAATCTTCCtgtatagaatttttttttttttttaaataaccctCCACCACAAATTTCACTTCCTGTTCAAATCTATGAAAATCCCCTTTTAGCCGCAGCCGAGCTCCTTTAATTTGACCCtaatttctaaatgcatttttatatttatttctatatagaAAGAAGGATTACGGTTCGCATTATAGACTAAACCTTGTTAAAGTTACTCTTTGGACTGTGAAGAGGATAGAAAGTCCACGTGTAATTCGTTTCTTGTAGCAGCATCCTataatattacatgtatataactGTATGCACGCAAAACAACTCACTCCACGTTTAACTTCTATGTGGAAATTAAACTGTTTGTCATTTCAGATTCAACTTTATTCTTTCACGGAGAACAAAGTAACAAACTCAAAAAACAATGTAGCAATTAAAAACAGCTGccctaatta

Function

symbol description
gata4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ development; cardiac muscle tissue regeneration; and positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in several structures, including endocrine system; gut; liver and biliary system; mesoderm; and pericardial region. Human ortholog(s) of this gene implicated in congenital heart disease (multiple). Orthologous to human GATA4 (GATA binding protein 4).

NR:

description
transcription factor GATA-4 isoform X1

GO:

id name namespace
GO:0030099 myeloid cell differentiation biological_process
GO:0055010 ventricular cardiac muscle tissue morphogenesis biological_process
GO:0060975 cardioblast migration to the midline involved in heart field formation biological_process
GO:0061026 cardiac muscle tissue regeneration biological_process
GO:0001889 liver development biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001947 heart looping biological_process
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09183 GATA4; GATA-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219886.1 True 2503 mRNA 0.52 6 25212806 25223080

Neighbor

gene id symbol gene type direction distance location
fdft1 fdft1,LOC107661354,LOC107671088 coding downstream 1210 25202241 ~ 25211596 (-)
ctsbb ctsbb,LOC107557005,LOC107661356 coding downstream 13875 25190559 ~ 25198931 (-)
LOC122325043 LOC107671087,LOC107728123,LOC107661362,LOC107556999 coding downstream 23286 25169118 ~ 25189520 (-)
bphl bphl coding downstream 59686 25151212 ~ 25153120 (-)
psmg4 LOC107671085,LOC107661364,LOC107739191,LOC107728114,LOC107572584 coding downstream 62284 25148142 ~ 25150522 (-)
LOC122325309 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 coding upstream 247702 25470782 ~ 25561241 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding upstream 352949 25576029 ~ 25596184 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding upstream 374033 25597113 ~ 25609145 (-)
hsp90aa1.1 hsp90aa1.1,LOC107704377,LOC107557012,LOC107564585,LOC103024454,LOC106533044 coding upstream 386236 25609316 ~ 25615276 (-)
LOC122325306 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding upstream 403572 25626652 ~ 25630935 (-)
G141951 NA non-coding downstream 44207 25165238 ~ 25168599 (-)
G141941 slc22a23,LOC107739176,LOC107572580,LOC107578994 non-coding downstream 81614 25066735 ~ 25131192 (-)
G141943 NA non-coding downstream 93043 25068982 ~ 25119763 (-)
G141920 phactr1,LOC107739173,LOC107655832,LOC107557022 non-coding downstream 152885 25054807 ~ 25059921 (-)
G141936 NA non-coding downstream 160899 25046771 ~ 25051907 (-)
G141972 NA non-coding upstream 54064 25277144 ~ 25325809 (-)
G141974 NA non-coding upstream 56647 25279727 ~ 25335044 (-)
G141979 NA non-coding upstream 70222 25293302 ~ 25294448 (-)
G141998 NA non-coding upstream 176471 25399551 ~ 25400241 (-)
G142006 NA non-coding upstream 202538 25425618 ~ 25426323 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 361027 24838652 ~ 24851779 (-)
G141651 NA other downstream 565385 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 680443 24524069 ~ 24532363 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other downstream 695063 24254393 ~ 24517743 (-)
G141502 NA other downstream 1206141 24004687 ~ 24006665 (-)
mettl24 LOC107738893 other upstream 71764 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other upstream 103428 25326508 ~ 25377416 (-)
G142058 NA other upstream 425412 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 524587 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 827749 26050829 ~ 26054469 (-)

Expression


Co-expression Network