rcan2 (rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692)


Basic Information

Item Value
gene id rcan2
gene name rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20173548 ~ 20229821 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219894.1
CATCATTTGAATGCCGGGAGGCGGTCATTGGTGAATCAAGCTGTCTGCAGTAACGTCAGGAGATTAGTGAATCGCAGCTGGAATGCGAGCTTGATTCACAAAGGCAAGAGAGGGAGACAAAGCCACCGCGCAGAAGATACGCACACCGGACTGTCACATCCCGCACAGCCATGAAGGGAGAGCATTTATTTGCCAACATGAGAAGCGCTCCGTTCCTCCAGCGGGTTTACCTCCTAGGTGGGGAAGAGCTGGTAGTCCTGCAGTCCACAATGGGAGAGTCCTCACTGGGAGACAGTTTCCAACAAATCACCGACTTCAATGATCTACCCACGTCCCTCTTCGCCTGCAACGTGGACCAATCAGTATTTGAAGACCATGAGGGCAAGgAAATGTTCGAAGCGCTCTTTCTTGCATACGATGAGGGTGTGACGTTTCAGCAGTTTAAGAGCTTCCGACGTGTACGAATCAATTTCAGTAACCCCAAAGCAGCAGCCAGCGCTAGAATAGAGCTACACGAGACACCTTTCAGAGGAAAGAAACTTAAACTCTACTTTGCCCAGGTGCAGAATCCAGCATCCGAAGGAGACAATTTGCACCTGGCTCCTCCCCAGCCTTCCAAACAGTTCCTCATCTCCCCTCCTGGCTCACCTCCAGTTGGCTGGCAACAGATTGACGAGGCCACACCAGTTATAAACTACGACCTGCTTTATGCAGTTGCCAAGCTTGGCCCAGGTGAGAAGTTTGAGCTACATGCAGGCACAGAGTCTACACCCAGCGTGGTGGTCCATGTCTGTGACAGTGACAcggatgaggaggaggaaccAAAGAACAACCCTAAACCAAAAATCATCCAGACCCGACGCCCAGACCTGCCAGTCTCACACTGAACTCTACAGCTCCACACAGAGTCAGGAGGACTTATCCCCTCCACCATCTCCTTCACAGGACCTCTGCCACTCTCCTTCAGAACCTTATCAAATACACAAGCAGGGTCTGAGGGACTCTAATCTGTGTTTCTCGTTCAGCACACACTTGTATACAATACTCAATGTGCTGTCAcacaattgttttctttttgttcgtttttttttatgttgcaatACTCTGTGTTAAATATGGCCGCTCTCTGTAACTCTTTTCCAATCTGACTCTGTTGTAATGTCATCTGATCACCAGTTAGAGGCAGCATGCACCCATCCCTGCTCTCAAATACATTTCTGATTGGATACTGGGCCGCGACACGTGATAGTGTCAGATGTGCCTACTGGCTGATAGCAGGCCACTTGGCTTTGCTCTTGCACCACCACAACTATGTACCATTTTTTACCCAGCAAGCCATTAATAATATTACGTTCTTCATAAGGGCATGCTAGCCACTAAATGTGGCTAAACACCAGCGCTGCATGTGGCACCCCTAGAAATATATCTTGCCTAAATAATTTCTGTCAAATAAACCTAGTATGGCAAAAACGGTTGACTTTTGCGTAGCAAAAAGTGCAGACCACAAGAAGCGCTCTCTTCAGGCCAGTGCATGTTCTGGTAGCAAACTGTAAGTTATTATTTTCCGCTGTGTATAATTGTCTGTGTCCCGCCAACAGTGTTCTTACAGAAAAACGATGCTTTTCCGAACGATAAGCTGACATTTTGATTGCACCTTTCAGTGGAACCTATATGAGTTGCTTCCtcaatgtgaatttttttttttttttttttttttgtgcttgtgcCCTTTTCGGGACGGAAATATTAAACCTGACTTATTTTCTCTGTAAGCTCCCACTACAGATTGATGACACCAATGGGTAATCAGGTgtcatttaatgaaatctgtaTTATGCATGGTTACTCGTTTCTAGAATTTAACATAGTTGTCCCAAATCCGCAGCTCTTCTCGTTGTCTGTGAGActtcattcacacacaagttCATTTCTAATCACGTCCAAGAAATTGCGTAGGATGCTACTGAGACAGATCTTCCAAGTGCTATTACACATTGGGTAACTACATGGGTGATGAACCTATCTTATTCAGTCAGTATCTTTTTGGTGTGCCTAACTCATTTATGGATTATtaagctaaacaaaaaaaaacagctatttataTATCCAAAGTACATAACATCAAGGCATGCACAAACCATATCCGTAGATTTGAGTCGCAAAGGCACTATACTACCCATGTAGTTGGCAAACGCACCGTGAGAAAGCATTAGTTAGTCGTGGtataatgcttacattttttcttccaaaatatataaacgACGTTCATCCCGGACAGTCCATCAACACTGTGATGTGTCATTACTGTGATACTTGACTGATGCCCCCCATGTTGAAGTATTATTGTACGAGTATGTTGTAAATTTTAGAAGGTTATAAGGATTAAACATCTGTTGTTCAGTGTTCACGGCTTGTTAAGGATGGTAGCCACAACCATTTTTCCTCCAATCTCTGATTGTTCTTTGGTTCAAATGCTGTTGGTATGCGATTCATCTGTCTGTGTCCATTAGCCTGAAAGAATGTAGAAGTAATACATCCCATCCCCGTGAAGCAGTGACTCTTTCACTGTTCTGGAAACAGGGTATTACTGCTGTTTTTTGACATCACCGTCTGCGTTGTGACACACAGATGTTTCCTTATGCTACCACAGCCACAAGCCttatttgatttagttaacAGTGCACACTCTGGTTTgcttctccaaaaaaaaaaaagaaaaaaagaaaagaagtagGATCAGTACATGTCAATAGGATAAAGGGGATGAGAGCAATATAACAAAACTAATACCAACCAACTGTCCACTGCCTTGGACTTTCCCTTCCATTTAATTATAGCCTGCTCGGCCAATCAGCTCTTCCCATATTCTCACAATGACAAAAAATCTATCGCAGTCTCACACGCTGCCAGCCTTCCTTACCGTCATGtaatttaagatttttgtaTTGTTCTGTATTGCACTTTCTTATTCACATGACTGTACACGGTATCATTCAGTAACtgtatttccttttatttttcatgtactCCTGAAGACATGATATTATATCTGTTCTTAAAGTCTTTGATCTGGAGTTAGTGTCACTGATGTTGGGAAACAATATCTGTATTGTGTATACTCGTGCAAGACCATTGGTGTTCTTGTCATCTACATGTGCGTCCTGCCTGCCGACACTAAGGAGACATATCTGTATATAttaatcaataatatttttactgcatttttgtacaaatattcATGGTAGCCATGTACAAGTAGTTGAGATGATTCTTtgttagtattaaaaaaaagtttggttttAAA
>XM_043219895.1
acatggacacGTACGTCTGAGAGTTACAGCAGGCTCTTCAGAGCAGGAAAGCAGCATAtccaaacactcacacacagcctCGCGTGCATTCAGACGCGCTCCTCACACATCCTCTGTCAGGGGCCGGTCATCCCTTCAATCTGAGTGAGCCCAGGATGCCCTCCAGGAGCGTGGACTGTAATATCTCCACCCTCATCGCCTGCGCGGTGGACGTGGAGGTGTTCACCGGTCGGGAGGTCAAGgAAATGTTCGAAGCGCTCTTTCTTGCATACGATGAGGGTGTGACGTTTCAGCAGTTTAAGAGCTTCCGACGTGTACGAATCAATTTCAGTAACCCCAAAGCAGCAGCCAGCGCTAGAATAGAGCTACACGAGACACCTTTCAGAGGAAAGAAACTTAAACTCTACTTTGCCCAGGTGCAGAATCCAGCATCCGAAGGAGACAATTTGCACCTGGCTCCTCCCCAGCCTTCCAAACAGTTCCTCATCTCCCCTCCTGGCTCACCTCCAGTTGGCTGGCAACAGATTGACGAGGCCACACCAGTTATAAACTACGACCTGCTTTATGCAGTTGCCAAGCTTGGCCCAGGTGAGAAGTTTGAGCTACATGCAGGCACAGAGTCTACACCCAGCGTGGTGGTCCATGTCTGTGACAGTGACAcggatgaggaggaggaaccAAAGAACAACCCTAAACCAAAAATCATCCAGACCCGACGCCCAGACCTGCCAGTCTCACACTGAACTCTACAGCTCCACACAGAGTCAGGAGGACTTATCCCCTCCACCATCTCCTTCACAGGACCTCTGCCACTCTCCTTCAGAACCTTATCAAATACACAAGCAGGGTCTGAGGGACTCTAATCTGTGTTTCTCGTTCAGCACACACTTGTATACAATACTCAATGTGCTGTCAcacaattgttttctttttgttcgtttttttttatgttgcaatACTCTGTGTTAAATATGGCCGCTCTCTGTAACTCTTTTCCAATCTGACTCTGTTGTAATGTCATCTGATCACCAGTTAGAGGCAGCATGCACCCATCCCTGCTCTCAAATACATTTCTGATTGGATACTGGGCCGCGACACGTGATAGTGTCAGATGTGCCTACTGGCTGATAGCAGGCCACTTGGCTTTGCTCTTGCACCACCACAACTATGTACCATTTTTTACCCAGCAAGCCATTAATAATATTACGTTCTTCATAAGGGCATGCTAGCCACTAAATGTGGCTAAACACCAGCGCTGCATGTGGCACCCCTAGAAATATATCTTGCCTAAATAATTTCTGTCAAATAAACCTAGTATGGCAAAAACGGTTGACTTTTGCGTAGCAAAAAGTGCAGACCACAAGAAGCGCTCTCTTCAGGCCAGTGCATGTTCTGGTAGCAAACTGTAAGTTATTATTTTCCGCTGTGTATAATTGTCTGTGTCCCGCCAACAGTGTTCTTACAGAAAAACGATGCTTTTCCGAACGATAAGCTGACATTTTGATTGCACCTTTCAGTGGAACCTATATGAGTTGCTTCCtcaatgtgaatttttttttttttttttttttttgtgcttgtgcCCTTTTCGGGACGGAAATATTAAACCTGACTTATTTTCTCTGTAAGCTCCCACTACAGATTGATGACACCAATGGGTAATCAGGTgtcatttaatgaaatctgtaTTATGCATGGTTACTCGTTTCTAGAATTTAACATAGTTGTCCCAAATCCGCAGCTCTTCTCGTTGTCTGTGAGActtcattcacacacaagttCATTTCTAATCACGTCCAAGAAATTGCGTAGGATGCTACTGAGACAGATCTTCCAAGTGCTATTACACATTGGGTAACTACATGGGTGATGAACCTATCTTATTCAGTCAGTATCTTTTTGGTGTGCCTAACTCATTTATGGATTATtaagctaaacaaaaaaaaacagctatttataTATCCAAAGTACATAACATCAAGGCATGCACAAACCATATCCGTAGATTTGAGTCGCAAAGGCACTATACTACCCATGTAGTTGGCAAACGCACCGTGAGAAAGCATTAGTTAGTCGTGGtataatgcttacattttttcttccaaaatatataaacgACGTTCATCCCGGACAGTCCATCAACACTGTGATGTGTCATTACTGTGATACTTGACTGATGCCCCCCATGTTGAAGTATTATTGTACGAGTATGTTGTAAATTTTAGAAGGTTATAAGGATTAAACATCTGTTGTTCAGTGTTCACGGCTTGTTAAGGATGGTAGCCACAACCATTTTTCCTCCAATCTCTGATTGTTCTTTGGTTCAAATGCTGTTGGTATGCGATTCATCTGTCTGTGTCCATTAGCCTGAAAGAATGTAGAAGTAATACATCCCATCCCCGTGAAGCAGTGACTCTTTCACTGTTCTGGAAACAGGGTATTACTGCTGTTTTTTGACATCACCGTCTGCGTTGTGACACACAGATGTTTCCTTATGCTACCACAGCCACAAGCCttatttgatttagttaacAGTGCACACTCTGGTTTgcttctccaaaaaaaaaaaagaaaaaaagaaaagaagtagGATCAGTACATGTCAATAGGATAAAGGGGATGAGAGCAATATAACAAAACTAATACCAACCAACTGTCCACTGCCTTGGACTTTCCCTTCCATTTAATTATAGCCTGCTCGGCCAATCAGCTCTTCCCATATTCTCACAATGACAAAAAATCTATCGCAGTCTCACACGCTGCCAGCCTTCCTTACCGTCATGtaatttaagatttttgtaTTGTTCTGTATTGCACTTTCTTATTCACATGACTGTACACGGTATCATTCAGTAACtgtatttccttttatttttcatgtactCCTGAAGACATGATATTATATCTGTTCTTAAAGTCTTTGATCTGGAGTTAGTGTCACTGATGTTGGGAAACAATATCTGTATTGTGTATACTCGTGCAAGACCATTGGTGTTCTTGTCATCTACATGTGCGTCCTGCCTGCCGACACTAAGGAGACATATCTGTATATAttaatcaataatatttttactgcatttttgtacaaatattcATGGTAGCCATGTACAAGTAGTTGAGATGATTCTTtgttagtattaaaaaaaagtttggttttAAA

Function

symbol description
rcan2 Predicted to enable calcium-dependent protein serine/threonine phosphatase regulator activity. Predicted to be involved in calcium-mediated signaling. Predicted to be active in cytoplasm and nucleus. Orthologous to human RCAN2 (regulator of calcineurin 2).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0019722 calcium-mediated signaling biological_process
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17903 RCAN2, ZAKI4; calcipressin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219894.1 True 3304 mRNA 0.43 5 20173548 20229821
XM_043219895.1 False 3160 mRNA 0.43 4 20173548 20195473

Neighbor

gene id symbol gene type direction distance location
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding downstream 102271 20069406 ~ 20071277 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 324503 19827100 ~ 19849045 (-)
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 522419 19649188 ~ 19651129 (-)
cad cad coding downstream 526460 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 545521 19616761 ~ 19628027 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 1154 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 28432 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 63473 20293294 ~ 20296159 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 71585 20301406 ~ 20304874 (-)
LOC122324455 slc35d3,LOC107727602,LOC107676236,LOC107675071,LOC107717122 coding upstream 76818 20306639 ~ 20311285 (-)
G140304 NA non-coding downstream 5550 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 263901 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 371880 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 433185 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 724836 19445828 ~ 19448712 (-)
G140315 NA non-coding upstream 36847 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 56659 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 396834 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 506767 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 762700 20992521 ~ 20995513 (-)
G140277 cad,LOC107602171 other downstream 110571 20061602 ~ 20062977 (-)
G140227 cad other downstream 113945 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 558346 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 869580 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 910596 19261466 ~ 19262952 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 180808 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 404475 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 738367 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 859583 21089404 ~ 21091008 (-)
G140616 NA other upstream 968889 21198710 ~ 21278741 (-)

Expression


Co-expression Network