clic5b (clic5b,LOC107678823,LOC107603103,LOC107697168,LOC107549663,LOC107726746)


Basic Information

Item Value
gene id clic5b
gene name clic5b,LOC107678823,LOC107603103,LOC107697168,LOC107549663,LOC107726746
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22670042 ~ 22683646 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219919.1
TTATAAGTGACCTGCCATCAGGTGAGGGCTGAGGCTCGACTTTCCAACTTCTCCAGACTTCCCCGCACTTCTCCACAGCCCTGGAAGAGCTTTAATCAGCATGGCTACAAACGCCCAAGAAATCATTTATGAACAAATAGAAGAGACTAAAGAAAACGTATACGAGAAGCCGTTCGAGAGCATAAATGACAACCCGGAGCCGAAATACGAGAATCAAGGCGTGAGTAAGGAACTCCCCGAAGAACCGATGTACAGCACGATCAATCAACCAGACTATATGGACACGAGAGGAACATCTCAAGACGGAGAAGAACAGCCTTCACCTCCCAGTGAACCAGGAGAGCAGCTCGAGAGCGAGATCATGGTCGCCTCTCTGCAGAATGGAGACGTTTACGGATCTTCATCTGTAGAAGAAAGCGGAGACCCATGTGATGACCAGCCCTCGTTGGTCCACGAAGACCTGCTCATGGCGTACAGTCTCCCAGAAGACGGATCTCCCGAACCCGAGGAGGTAGTTGACTACAGCCTGAAGGACGTGGAGATCCGCGCCGCGGAAGAGCCAGCGGCAGTCTCCGACCAGACTCAGCCGAATATTGCGCTTTTTGTGAAGGCCGGTTGTGATGGCGAGAGCATCGGAAACTGTCCGTTCTCTCAACGCCTCTTCATGATCCTCTGGCTCAAAGGCGTGGTCTTCAACGTCACCACTGTTGACCTGAAGAGgaAACCAGCTGATTTGCACAATTTGGCTCCGGGCACTCATCCTCCTTTCCTGACCTTCAACGGTGAGGTGAAGACAGACATTAACAAGATCGAGGAGTTTCTGGAGGAGGTTTTGGCACCACCAAAGTACCCCAAACTTGCAGCCAGGCACAGGGAGTCAAACACAGCTGGGAATGACATATTTGCAAAGTTCTCAGCTTTCATAAAAAACACTAAGCCAGATGCGAACGAAGCTCTGCAGAAGGGTCTGACAAAGGCGCTCATGAAGCTGGACGAGTACCTGAACAGTCCTTTGCCTGATGAGGTAGACGCCGACAGCATGGAGGAGGAGAAGGCCTCCGACCGCAGGTTCCTGGATGGGAATGATCTGACTCTGGCAGACTGCAACCTTCTGCCAAAGCTCCACATAGTGAAGGTCGTGGCCAAGAAATATCGGAACTACGACATCCCCAGTGATTTGACAGGCGTGTGGCGTTACCTGAACAATGCGTACGCGCAAGAAGAGTTCACCAACACCTGTGCCGCCGACAACGAGATCGAACTAGCATACATGGATGTGGCTAAAAGGCTAACTAAGTAAACCGATGAACAAATTCGACGCATATAGACTTGGGGTAGCTCATTTCTCGGGGGAAGAGATGACGTTTTCTATGTAATTCAAAGCTGTTGATCCCGAACTACAAGTCAGTAGtttcattcatccagggtcctGTTAATCAATAAGGGCCGGTGCTCTGATGTAATTACCGTGAAATGTGAATACAAAATATCAGCTCATATTCACCAGCTCTCGTAAACATTGTCCCAAGTGACTTCTATTGTATCTCTATTTAAAGAGATTTCACATtactgttttctgttgttttactCTGTTTATCATATCATGCACTGATTCTCGAGGCACTGGAACAGCATGCCCCACAACTTTAATTGCATCGAGACCGAATTAAAGATTTGCCACTAGAATATTTACATCACCTTCTGTCAGCCCAAAACATAATTCTTTacaaagatttaaatatatataaaactaatatccaaataataaattgacacataccttactttttaaaatcagagGTAAAATTAACAATGTCTCTTAAGTGTttaattaatgtgaattatactattatattagAAAAATGATGCATCTGAATATATCTTAAAGTTTAATTTCCTGTCTGCAGTGTCACGCGACCCTTCAGATATCTTACAATATGCTAAAAATTACTTACCAGtgttaaaacagtaatattgttgtggaaattattttaaaaaagtcattatttgcaAGTCTTTACTGAcgcttttgatcaatgtaatgcatccttgctgaatgaatatatatatatatatatatatatatatatacatatatacatatatacagcactcacaaacaaacatttgaatgatagTATGATAGTATAGAATTTTGTCGGTACTCAAGAATCGGTGCATTGCATAACCTGTCGTATATACGTGACAGCCGTTTAAGCATTTCAAATCCGTATTTCATCTCCAATCGTTTTACAGTATCTGTCGATATTGCTttctgttatgtttttgttattatttgtgtacAATGGGTAAAAAAGATCTCTCGTGAGCAGCAGGACAAGCGAAGCGAAAAGGTTGGTCCGTCCCGGGCAGCTTTATAACCAATCATACAACATTTGTACATgtctcatgcatttttttacccCAAAGGAGCACTCGTCTTTAAATACATGATGATTTAATGAGGTGCTAATTTAATATGTGCCTTCGTTAGAAGAAATGCAGTGTGGCAAATCCAGCGTATTATTGCTGTCATTGATCATTTGTACACGAATATCCTGCTCTTTTAAAGTTTCCGCAAACGGTTTACAGAAATATCTCGAATCTTCATTGCCTCATCATGTAATTTGCTCGTAAAGTACAACTTTTTCTCAGTCTTTCCTCTGTTATTCCTCACGACTCGTATCATTTTGTCTTCTCGTTTCATTTTGGCTTATCTCAAAGCGCTTAACATCATTCGGCGCTGGATACATcatgctgaaatatttattcacaGCCCCGTTTATAGGAAATTAACGAGCTGACATGGAAAGGAGATTCGGGATACACGGCGGTCCACCGAAATGGAGAATAAGGAAATCTGATCGGGCGTCTGTCCAGGTCTCCTCCTCTCCACTTAGCACTGCTGGAATATCGTAGGGCCCATGATAGGTCCTTGTGGAGCTCCTGCTCTTGTGTGGTTTGGAAAAGCGTTTGATATGAAATGAGAGTGTGGCGCCAGAGAGGCCTGTTCCGAGTGAAGctctatgaataaaataatattttcaca

Function

symbol description
clic5b Predicted to enable chloride channel activity and voltage-gated ion channel activity. Predicted to act upstream of or within several processes, including chloride transport; glutathione metabolic process; and sensory perception of sound. Predicted to be located in cytoplasm. Predicted to be part of chloride channel complex. Is expressed in digestive system; immature eye; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 103. Orthologous to human CLIC5 (chloride intracellular channel 5).

NR:

description
PREDICTED: chloride intracellular channel protein 5-like isoform X1

GO:

id name namespace
GO:0006821 chloride transport biological_process
GO:0016020 membrane cellular_component
GO:0005247 voltage-gated chloride channel activity molecular_function

KEGG:

id description
K05025 CLIC5; chloride intracellular channel protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219919.1 True 3049 mRNA 0.43 6 22670042 22683646

Neighbor

gene id symbol gene type direction distance location
opn8a opn8a,LOC107678826,LOC107726748,LOC107549662,LOC107743142 coding downstream 102911 22557504 ~ 22567131 (-)
opn8b opn8b,LOC107678833,LOC107726744,LOC107549692,LOC107603078,LOC107603079 coding downstream 117768 22541777 ~ 22552274 (-)
LOC122324950 LOC107667618,LOC107600078,LOC107750074,LOC107603106,LOC107726759 coding downstream 164240 22498745 ~ 22505802 (-)
atad2b atad2b,LOC107697175,LOC107667607,LOC107750077,LOC107742719,LOC107603081 coding downstream 199772 22394835 ~ 22470270 (-)
gzf1 LOC107667619,LOC107600081,LOC107593244,LOC107742706,LOC107756665,LOC107697078 coding downstream 572837 22092072 ~ 22097205 (-)
lin9 lin9,LOC107726751,LOC107678835,LOC107697095,LOC107743312 coding upstream 86273 22769919 ~ 22776432 (-)
parp1 parp1,LOC107678834,LOC107697162 coding upstream 93475 22777121 ~ 22791942 (-)
si:dkey-206f10.1 si:dkey-206f10.1,LOC107603098,LOC107743294,LOC107549698 coding upstream 109591 22793237 ~ 22802967 (-)
pomcb NA coding upstream 157250 22840896 ~ 22845553 (-)
snx9b snx9b,LOC107678839,LOC107726735,LOC107697144,LOC107743295,LOC107549668 coding upstream 175830 22859476 ~ 22877145 (-)
G141255 NA non-coding downstream 7801 22660615 ~ 22662241 (-)
G141083 NA non-coding downstream 128348 22541463 ~ 22541694 (-)
G141082 NA non-coding downstream 128892 22540688 ~ 22541150 (-)
G141080 NA non-coding downstream 129715 22539920 ~ 22540327 (-)
G141079 NA non-coding downstream 130128 22539593 ~ 22539914 (-)
G141283 NA non-coding upstream 55995 22739641 ~ 22740927 (-)
G141307 NA non-coding upstream 147268 22830914 ~ 22831421 (-)
G141319 LOC107726732,LOC107678815,LOC107697073,LOC107726733,LOC107697074,LOC107748126,LOC107553823,LOC107726734 non-coding upstream 195086 22878732 ~ 22890133 (-)
G141324 NA non-coding upstream 204874 22888520 ~ 22894015 (-)
G141331 LOC107726750,LOC107678830 non-coding upstream 225611 22909257 ~ 22915952 (-)
G140972 NA other downstream 556998 22112602 ~ 22113044 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other downstream 823125 21845214 ~ 21846917 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other downstream 825409 21842432 ~ 21844633 (-)
G140883 NA other downstream 828574 21841113 ~ 21841468 (-)
batf batf,LOC107697118 other downstream 928965 21732544 ~ 21741077 (-)
mcm9 mcm9,LOC107678857,LOC107549683,LOC107743310,LOC107697136,LOC107727573,LOC107603056 other upstream 700925 23384571 ~ 23401391 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other upstream 1102106 23785752 ~ 23823050 (-)
G141502 NA other upstream 1321041 24004687 ~ 24006665 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other upstream 1570747 24254393 ~ 24517743 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other upstream 1840423 24524069 ~ 24532363 (-)

Expression


Co-expression Network