actc2 (zgc:86709,actc1,ACTC1,actc1a,LOC108414322,LOC105024319)


Basic Information

Item Value
gene id actc2
gene name zgc:86709,actc1,ACTC1,actc1a,LOC108414322,LOC105024319
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 6317799 ~ 6321279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219941.1
ATTGGCCGCCACTCAAGGCGCTGTCTACCATTCACTCTCCAAGGGAACCGGCTCCTGGTGCTGATCTGACCCCCAGCTGACACCATGTGTGACGACGACGAGACCACCGCTCTTGTGTGCGACAATGGCTCCGGCCTGGTGAAGGCTGGCTTTGCCGGAGATGATGCTCCTCGCGCTGTCTTCCCATCCATCGTTGGTCGTCCTCGCCACCAGGGTGTCATGGTAGGTATGGGACAGAAAGACTCCTACGTGGGAGATGAGGCTCAGAGCAAGAGAGGTATCCTGACTCTAAAATACCCAATTGAGCACGGTATTATCACCAACTGGGATGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTGCGTGTGGCCCCCGAGGAACATCCCACCCTGCTCACTGAAGCCCCTCTTAACCCCAAGGCCAACAGAGAGAAGATGACGCAGATCATGTTCGAGACCTTCAACGTTCCCGCCATGTACGTGGCCATCCAGGCTGTGCTGTCCCTGTACGCTTCTGGCCGTACCACTGgTATTGTGCTGGACTCTGGAGATGGCGTGACCCACAATGTGCCCATCTATGAGGGTTACGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCCGGTCGTGATCTGACTGACTACCTGATGAAGATCCTGACCGAGCGTGGCTACTCTTTTGTGACCACGGctgaacgcgagaTCGTCCGTGATATCAAGGAGAAGCTGTGCTACGTCGCGCTGGACTTTGAGAATGAAATGGCCACCGCTGCTTCATCCTCTTCTCTGGAGAAGTCCTATGAGCTGCCTGATGGTCAGGTCATCACCATAGGAAACGAACGCTTCCGTTGCCCAGAGACTCTCTTCCAGCCTTCTTTCATTGGAATGGATTCTGCTGGTATCCATGAGACCACCTACAACAGCATCATGAAGTGCGACATTGACATTCGTAAGGACTTGTATGCCAACAACGTCCTGTCTGGTGGCACCACCATGTACCCAGGTATTGCTGATCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACCATGAAGATCAAGATCATCGCTCCCCCTGAGCGTAAGTACTCCGTCTGGATCGGCGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAAATGTGGATCAGCAAGCAGGAATACGATGAGGCTGGCCCATCCATCGTCCACAGGAAGTGCTTCTAAGATACCCTTATCACGCGACAGATTACGAAATCCTCAACATTACCTCCGCCCGTTAACGCGCGCAGGCAGATTTCGCCTTTGTTTTTCCTTGTACAGTATGTTTACACCAAAGTGCAATTTGTTTGTAGTTATTTACTGgatcataaatacatttgtacgTGCATATTTattggtttttaaataaacaagacCGGGAAA

Function

symbol description
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).
actc1 Enables ATP binding activity; microfilament motor activity; and myosin binding activity. Involved in actin-myosin filament sliding and heart contraction. Located in actin filament and sarcomere. Implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11.

NR:

description
cardiac muscle alpha actin 1

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12314 ACTC1; actin, alpha cardiac muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219941.1 True 1416 mRNA 0.53 8 6317799 6321279

Neighbor

gene id symbol gene type direction distance location
gjd2b gjd2b,LOC107740303,LOC107582173,LOC107549543,LOC105892965,LOC107582146,LOC107712441 coding downstream 1985 6312330 ~ 6315814 (-)
cgrrf1 cgrrf1,LOC107740293,LOC107664817,LOC107712438,LOC107582104 coding downstream 60352 6254715 ~ 6257447 (-)
nid2b LOC107712413,LOC107549538,LOC107549503 coding downstream 85132 6218511 ~ 6232667 (-)
zfp36l1b zfp36l1,zfp36l1b,LOC107729081,LOC107664815,LOC107695995,LOC107712436 coding downstream 119644 6193434 ~ 6198155 (-)
crip2l zgc:101840,LOC107695994,LOC107582101,LOC107549535,LOC107685785,LOC107729083,LOC102218464 coding downstream 159190 6149450 ~ 6158609 (-)
meis2b meis2b,LOC107664830,LOC107668148,LOC107582109,LOC107712444,LOC104938729,LOC105017579 coding upstream 29551 6350830 ~ 6368755 (-)
glrx5 glrx5,LOC107752683,LOC107664827,LOC107747371 coding upstream 146500 6467779 ~ 6470069 (-)
flrt2 flrt2,LOC107752686,LOC107664820,LOC107564782,LOC107701229,LOC107570088,LOC107706955 coding upstream 351951 6673230 ~ 6708654 (-)
LOC122325354 LOC107742115,LOC107664810 coding upstream 800072 7121351 ~ 7124683 (-)
LOC122325011 LOC107742110,LOC107581491,LOC107664824,LOC107658182 coding upstream 834988 7156267 ~ 7158619 (-)
G136440 NA non-coding downstream 70908 6246263 ~ 6246891 (-)
G136416 NA non-coding downstream 112361 6205090 ~ 6205438 (-)
G136398 LOC107685776,LOC107712433,LOC107582143 non-coding downstream 172138 6128498 ~ 6145661 (-)
G136388 LOC107685791,LOC107582172,LOC107712426 non-coding downstream 267166 6048968 ~ 6050633 (-)
G136368 NA non-coding downstream 457176 5859953 ~ 5860623 (-)
G136506 NA non-coding upstream 62153 6383432 ~ 6398110 (-)
G136689 LOC107581525,LOC107742114,LOC107664807,LOC107658183,LOC107721806,LOC107597854,LOC107737069 non-coding upstream 805934 7127213 ~ 7130585 (-)
LOC122324389 NA non-coding upstream 812469 7133748 ~ 7139291 (-)
G136694 psma6b,psma6a,psma6,LOC107580710,LOC107664826,LOC107693094 non-coding upstream 830111 7151390 ~ 7151754 (-)
G136696 LOC108231735,LOC107396026,LOC107597861 non-coding upstream 831189 7152468 ~ 7251872 (-)
G136460 LOC107582106,LOC107740299,LOC107664831,LOC107668145,LOC107549511 other downstream 14823 6274754 ~ 6302976 (-)
zpax2 NA other downstream 386677 5924066 ~ 5931122 (-)
G136357 NA other downstream 613888 5701679 ~ 5703911 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other downstream 719133 5591338 ~ 5598666 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other downstream 957730 5161206 ~ 5360069 (-)
si:dkey-63b1.1 si:dkey-63b1.1,LOC107668138,LOC107747376,LOC107740302,LOC107582148,LOC107664798,LOC107549507 other upstream 89683 6410962 ~ 6414013 (-)
LOC122324366 LOC107549545,LOC107582175,LOC108413331,LOC105929849 other upstream 111483 6432762 ~ 6451499 (-)
G136688 NA other upstream 804469 7125748 ~ 7228963 (-)
G136707 NA other upstream 975582 7296861 ~ 7305724 (-)
LOC122324874 tmem30ab,LOC107721815,LOC107714749,LOC107658180,LOC107597847,LOC107664818,LOC107581488 other upstream 1014109 7335388 ~ 7340455 (-)

Expression


Co-expression Network