chrm5b (LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776)


Basic Information

Item Value
gene id chrm5b
gene name LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15166406 ~ 15175414 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219958.1
aaaaagtaaaagcaccTAAATcctgaaataatataatttaacatcAGTATCACAGCAGAGTTGACTGAATAAATGGCCTAAATCTGGGGTGGGATTATTCATTTGGCAGacgagattttttttattcagtgaagcCAATGCAACAGAAATAATTTACAGCATGCTACAGCTTATCTTGAATAACAgacaattattataaaaataaataaataaatcaattcacTAGGAACCTCAATAGCttgtaatatttaacatgaCCATTTTACTTTGATTTAATCTGAAGTAGCTCTCACAGACAGCAAAAAGTCATGAAATGACCCTCTCACGTCTGCATTTCCAGCTAACCCATCGTTTCCACCCACCTATTTTCTCGCATCCATGCTATCTGTGTCAAAAGAGAGTAATTATTGCCTCCATTATGTTTTAGTGAGCATAATACCGCCCCTTCACACACCCCGGCCGTCTACATCATGAGTAGAAACGCTCTAACCTTCATCCCCTCATTTCTGCTTGGACTCGGCCCCCCgctcttctcctcttcctcctcccaTTCTCGCCGTCTGCCTGTTGTTCACTGCCCCAAATCATGACGATCATCCCAGCCCAGTGGGAATGACCTCCTCCCAGCCATTCACATCTGTGTCTGTCAGTGCATCCACAGGCAGCAGCAGCACATATTTATCCAgaggaacagcagcagcagcatttcCCCACTCATCCTCCACCACCGAGAGACAAGGAGATGCTTAACAATCAATGTTACGGACTTTAGTGCGGTTGTCACAACTTGAGCTGTTTTTACTTCGAGTCTTCTTAAGAAAACCCATCCAAAAACAATGCAGAAGATGTTACTACTACTTTGAGGATTATATCATTTAAGATCGGGCTTGTGACTGGATGAAGAAGAGCCATCTAGCCACGCAATTCCTGAGAGTCTGCTAGAGGGGAAAAGGTTTGGGATGGGTGACTGTCTGACCAAGCCAGATCTGTAGATGGAACTATCCCCTGCAAAGAAAATATGAAGAATACACAGAAAATTGTATCAGTTTTCTAAGCGATCAGCGGTAACATGATGAACATGGATATTCAAAATTTAACCGCCAGTGGAAATGTCTCTGCTGTCCTACCTGCCCCATACAGTCTGTTGGAAGTCATAACCATTGCAACAGTATCAGCTGTCGTGAGTCTCATCACAATAGTGGGCAATGTTCTGGTGATGCTCTCTTTCAAGGTCAACAGCCAACTTAAGACTGTTAACAACTACTACTTACTCAGTTTAGCTTTTGCAGACCTCATTATCGGTGTGTTCTCAATGAACCTGTACACATCTTACATTCTCATGGGATACTGGTCTTTAGGAAATATAGCATGTGATCTGTGGTTGGCACTTGACTATGTTGCAAGTAACGCATCTGTGATGAACTTGCTGGTCATCAGCTTTGACAGATATTTTTCTATTACAAGACCACTTACCTACAGGGCTAAACGGACCCCGAAACGTGCAGGCATCATGATTGGCATGGCATGGTTGATATCGTTTATATTATGGGCTCCACCCATTCTGTGCTGGCAGTACTTTGTTGGAGAGAGAACGGTTCCTCCTGACCAATGCCAGATCCAGTTTTTCTCAGAACCCATAATCACATTTGGTACAGCCATAGCGGCCTTTTATGTACCGGTATCCATCATGACAATCTTATATTGCAAAATCtacaaagaaacagaaaaacgtACTAAGAACTTAGCAGAACTCCAAGGATACCCATCGCTGGACAGCCACGAAGACCCTAAAGTCCGAAAGCCAATACTACGATGCTTTAGCTTTAAAAGCAAGAGGGATGGGACTCAAGCATCTTGGTCATCGTCCAACCAGAGTTACGTAACTAGGACAACATTGCAGTCAGAAGACCTGTGGACAAAATCAGAGCAGGCCACCAACCTGAACAGTTACACATCATCAGAAGATGACGAGCGGTCCGTTTCTGAATCAACTCCACGTGAATCCTTCAAGAACCAAGAATCGACTGTCAACAAAAATGGCCAGCTGGTCTGTTATGAAGACAGCAAATACCTAAGTGAGCTTGCAAAATGCTCCCAGACgaacaataaaaaatgcatgtcaTACAAGTTCAAGCCAATCCTTAGCGACATAACTGCTTTGCAAGGTGGTACCGAAGctgataaaacaaacacagatcactgTCAGTCCTCAGAGCCACAGGCTCCTTCATCCACATCCTCTTCTACCAAACCAGAAGATCCAAACTTGAAGATCCAGATGACCAAACGGAAACGAATGGTCCTTATCAAAGAGAAAAAGGCTGCTCAGACTCTCAGTGCTATTCTTCTGGCTTTCCTCCTCACCTGGACCCCATACAACATCATGGTGCTCATCTCCACCTTCTGTTCTGAATGCATCCCAGTGTCCCTCTGGCATCTGGGCTACTGGCTCTGCTATGTCAACAGCACCATCAACCCCATGTGTTATGCTCTATGCAATAAGACCTTCCAGAAGACCTTTTGGATGTTAGTCCTCTGCAAATGGAAGAAgaacagaggagaggagaaactGTATTGGTGTGGACAAAACCATTAAGCAACAGCAGAGATGGCAGATTGTAGAGCGTGAACGATCGTTATATTAAATGggcattaaaattacattttagcttATGTTGTGCATTACAGAGCATTACCATGTTCTAGGCAATATTTTGTGTACATATTGTTTATATTgccattttgatttttaaaaaatgctataatgtattaaaatataatttagcttCTGTTTTCAAAGTTTAAAGACCACTTAACATGTTTACACAACAGTGTGTTGTACTATTGTGAAATGCCTTAAGGCTATGAATGGTGAGGATATGGATTGTGAACTTATAAATACCCAACACACAGTGTTTATTATATGATTAACGTTTTgtgataaaattatttttatatattgtaagcCTTGGTCATGTCAGTGACACTGCATGCATAGAACGTTTATTGAAATATCTGGTGTGCAAAGCAATGTTGTTGTATTATGTTTGTAGAACTGGACAGTGGTTGATATGgatattcagattttatttggACCTGCCAAAGCATCGCTGTAGAGAAATACACCCAAAGAGATTGTAGCTTCCCTCTGGATGTAAAATTCACTCATGGCAGAGATTCAATCACATTTTACAGTTCTGCAGCATCCCAGTGTGCACTgatcaataatataaaaaaaagtctttcataATTGTTGTGCCAAGAGATAGATCTGAACTTACTTAAACATTACCACATCATATAAACACAGTTATAAATGTTGCCTGGTTGTTTTCCATTCTGTTTACTAAGTCTCTACTCTTTCTGTTGTAATGGCGTGCCattttatttgatgtgaaataaatgttttaaaa

Function

NR:

description
PREDICTED: muscarinic acetylcholine receptor M5-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001696 gastric acid secretion biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016907 G protein-coupled acetylcholine receptor activity molecular_function

KEGG:

id description
K04133 CHRM5; muscarinic acetylcholine receptor M5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219958.1 True 3413 mRNA 0.41 2 15166406 15175414

Neighbor

gene id symbol gene type direction distance location
thbs1b thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445 coding downstream 76833 15078974 ~ 15089573 (-)
susd6 susd6,LOC107721312,LOC107756599,LOC107549087 coding downstream 129519 15015837 ~ 15036887 (-)
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding downstream 181550 14976262 ~ 14984856 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding downstream 195116 14907899 ~ 14971290 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding downstream 262911 14846009 ~ 14903495 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding upstream 10298 15185712 ~ 15252625 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding upstream 100693 15276107 ~ 15278071 (-)
LOC122325338 scg5,LOC107549096,LOC107721307,LOC107756590,LOC107601900,LOC107668261 coding upstream 102804 15278218 ~ 15280428 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding upstream 105588 15281002 ~ 15284293 (-)
LOC122324271 rrm2,LOC107668265,LOC107549099,LOC107756588 coding upstream 113357 15288771 ~ 15292255 (-)
LOC122324712 NA non-coding downstream 322670 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 372697 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 587505 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 641383 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 738154 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 148158 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 156387 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 195194 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 341429 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 508762 15684176 ~ 15711053 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 151137 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 163204 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 720481 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 967878 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1398582 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 666984 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 667484 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 667995 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 668940 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 814735 15990149 ~ 15993645 (-)

Expression


Co-expression Network