CI01000001_10525795_10530510 (WNT1)


Basic Information

Item Value
gene id CI01000001_10525795_10530510
gene name WNT1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10523262 ~ 10530543 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10525795_10530510.mRNA
ATATAAAAGGCGTCCCTTTAACCGGATTGCCGCTAATCTGCGCCGCATCGCATGAGTGTTTCAGGAAAACCTGTTTAAGATCCTTCAAGAGTATAAGAGCAGGCTAAGCCCAGAAAAGCAGCCCTCATTAAATACCACTAACAAAAGCGCACTTCCTTCAGTTAGCCATTTACTTCAATCCCTCAGAGAAGAAAGTGCTCTCTCTTTCTCTCAGATTCTTTCATGGCGACATCAAACACATATATGTGCTTAAAACACGACACGTTGATTTAATATTTGCCAATTCTTTGTGCAGACGGTACCATAAATGTATGGAGTCAAAAAACCGACAGCAAAATACTATTTGATTCGTGCCTTTAGTGACCATATGCGATCAAGGGAGGTCTGCGGTCCAGATGGTGAACAGTTTCGTCTCGACTTTTTTCTACTGTGGTGTCACACTACTTATTTATCTGTAACAATTTCTTATTTTATTCGTTGTCGCAAATGACGAAGAATAGCCTATTAGAGATGACCGGAAGTGTTGTAACACGGGACGAGTGTAACATCATCAGTGTTACTAATTTGAAATGAGCTACATGGGTCAAATTACCATTAGAAGTTGTAAGACTGTATATATATATATATATATATATATATTTATAGAATTAATTTTGAGGTTAAAAGGTAGATGTAACACCGTCTGCAGTTGTTACCATAAGTTTTATAGCCCATTTTATAAAATGTTTGCCATTTATTTACCTTTGAATAAAATGTTTAAAAATTAAATGAGGATGGGGTGGTGATGAAATAATTATTTTGGACAAATACATTTGATTACCATAATAAATTGATGTGCACAATTTAAAATGACCAAGTTTTCGATCACTGTTACAACCCATTCAACGTGTCGTTACAACCCAACATCCCTCAATGAAGTTGATATTAATTTACACAGTTTAGGGATATATATATATATATATATATATATATATATATATATCAAAATTTGAGACACAACACAAAAAAGTTACAGACTTAAAATTTTTTGAAACAAAAATTTGTTAGACTCTCCGGTAAGTCCTCCTTTAAAATGAGAAAGTAACGCAGCATTAGCACTGTCCCGTGTCTTTAATACTCTCCTTTTCATTTAGCCCTTTTTTCCACCATAATTATAGCATGACGTTTCCACTTGATGTGCTTTATTTAGGCTAAACAGTACAAACGGGTGAGCGCAGAGCGCAAGCACGGACAAAAACATTTTTTTTTTACGCGCAAGAGGGAGGAGACGCAGTTAAGGGAGTAATGCATGCATGCACCCAGGGTAAAAAGGCCAGTTTAGATGTTTTATATTCCGCTCTTACAGTAACCCTGTCGCGACACCTTCCACGCAGAAGGAGCTGAAGACACAAGTGGCGCGCGCGCGCGCACACACACTCACTCACTGCAATGAGAAGGAATAAATCAGCTCTGCATATATTGAAGACGCCTGAGGGAACTGTATTTTATATGATTTCGCTTGAATGTATCTGAGGAATCTCTGGACGAGGATTACAAAATGATATGTAATTTAAAGCGCCTATAACGGATCTTTTCTTCATCTCCTCTCCTTTATGTCGGGTTTTGCCTCCTGTATTCATTGTGGGCAATGAGAAGAATTAAGCTATCCGTCCATTCAGTTCCACTCAAAAGGAGGGAGGGAAAAAAAACAGAGGGAGATGAGAGCAGCAAATCCCTTTTTTATTCATCTTGTAGCGTTCAATAAGTGAACAATGTGTCGCCTATCAGTCACCGAGGGGATCAGGTCTTCGGGACTGTCCCACGCGCTCAGTGCTGTGAGCAGAGCATCACTAACACACAGACTGTAAGAGCAGCAGCAGCAGCAGCAGTTGCACTGGCATCCCATCCAGAACCTTTCTGTGACTTCTACACTGATTTTATGAATAAACGTTGACCCGCGCTGTCAGTCGCACTGGAATGTGGAGCGGTAAGTGGATGCGTAATGCAACCAAATTGCTTAATATGTTTGTATGTTATTTTTCATTTCATTTTAGAATGCCAAAAATAATAGCATCATTAGGGTTTCATGAGTTGCTGTCTGGTTCTTTGGAGACTAAAAAGTTATTGATGTTGGGTTCTTTAGATCAGCATATTAGTATGTTCTTTAAAACATAAGACGGTGTTCGAAAGAACTAGAGAATAAAAAAAAGTTATTTATGGCATGTTGGCTCTATAATTTAAACCTTTATATGTTTTTTTTTAAAAGTATAGACTAGATATTTTAGTTGAGCCACACACAGAATCCTGACATCAGTATTTTGATATTCATTTAAAACTTCATACACATTTGTAAACAAAATCGTATTTCTATAATACACGGCATGCATTATAACATGCGTAATTTCATTGCACTACACTAATTATTTTGCTGTTTTTATTAGTTTAATAATTGTCAAGATGCTCATATAGAAACGACATAACATAGACTGACATTGTTTATTATTGCAGGAATCTCATTTGAGGTTAATTGGTTAACTTTGCCCTTTCAGATATCATGCGGGTCCTCGCGTTGCTTCTCGCAGTCAAAGCGGCATGTGTGCTCCTGGTGTCCTCTCTCACTGGCACAGGGGCGGTGAACAACAGCGGCCGGTGGTGGGGTATTGTGAATGTGGCGTCCTCAGGCAATCTCCTCACCAACTCTAAGAATGTGCAGTTGGTGCTGGACCCCAGCTTGGCGTTGTTAAGTCGTCGTCAGAGAAAACTGATCCGGCAAAACCCTGGCATCTTGCACGCCATTGCAGCGGGCCTGCATACAGCCATCAAGGAATGCAAATGGCAGTTTCGTAACCGCCGCTGGAACTGTCCAACCACCCACAGCCCCAACGTCTTTGGCAAAATTGTCAACCGAGGTTGCCGTGAGACTGCGTTTGTGTTTGCCATCACAAGTGCTGGTGTTACTCACGCTGTGGCTCGGTCCTGTTCTGAGGGGGCCATTGAGTCCTGCACCTGCGACTACCGGCGCCGAGGTCCTGGAGGGCCAGACTGGCACTGGGGAGGCTGCAGCGACAATGTGGAATTTGGCAGGATGTTCGGACGAGAGTTTGTGGATTCCAGCGAGAGGGGCAGAGATCTACGGTATTTGACCAACCTGCACAATAATGAGGCAGGAAGAATGACAGTCGCATCAGAAATGCAGCAAGAGTGCAAGTGCCATGGGATGTCTGGGTCCTGCACTGTGCGAACGTGCTGGATGAGACTGCCCAGCTTCCGTGTAGTGGGAGACTTTCTGAAGGACCGCTTCGATGGCGCTTCTAGAGTCGTGTACGGCAACAAAGGCAGCAATCGTGCATCCCATCGAGCCGACCCCCGCCACCTGGAACCGGAGAATCCAGCACATAAACTCCCTTCGGCTCGGGACCTGGTCTACTTTGAAAAGTCGCCCAACTTCTGTTCCTACAATGGCAAAACAGGCACGCATGGCACATCGGGACGTACCTGCAACAGTTCATCGCCGGCGCTGGATGGGTGCGAGCTTCTGTGCTGTGGAAGGGGGTACAAGACTCGAATGGAGCAGGTCACAGAAAGATGCCACTGTACTTTCCACTGGTGTTGTCACAGAACCACTCATTTCCTAACACTGCTCACAATAACAGGTTCGTCTTTCCATATGGGGTTGCATATTCTCCTCAGCTTCGTTTATGATCCATCAATCATTTCTCAGAACCGCAACGTGGCCAGCGCGACCACAAGAGTTTGGATGAAGGCAGACGATTCTTTCTCTCACCGACCGCAACATATCGCAGGGCCACTGAAGGTCAGCCAGACGGAGCGCTGCGCCGCCGCAGTCGTCACATCCGCATCCCAGAACACACAGCGATGGGAGAGGATGAGAGGAGAAATAGGACCTAGAACGCTCACAGGATAACAGAGAGAGCTCACAGAAAAACAAAAATTTAGA

Function

symbol description
wnt1 Predicted to enable cytokine activity and frizzled binding activity. Acts upstream of or within brain development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including central nervous system; midbrain hindbrain boundary neural keel; neural plate; neural rod; and neural tube. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 15 and osteoporosis. Orthologous to human WNT1 (Wnt family member 1).

GO:

id name namespace
GO:0005788 endoplasmic reticulum lumen cellular_component

KEGG:

id description
K03209 WNT1; wingless-type MMTV integration site family, member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10525795_10530510.mRNA True 3937 mRNA 0.43 6 10523262 10530543

Neighbor

gene id symbol gene type direction distance location
CI01000001_10420931_10426716 NA coding upstream 96115 10420318 ~ 10427147 (+)
CI01000001_10395420_10396473 NA coding upstream 126789 10394851 ~ 10396705 (+)
CI01000001_10328133_10329110 NA coding upstream 194152 10328040 ~ 10329110 (+)
CI01000001_10321783_10325266 NA coding upstream 197957 10321647 ~ 10325305 (+)
CI01000001_10150798_10152858 MIPA coding upstream 370324 10150373 ~ 10152938 (+)
CI01000001_10538498_10539667 RPS26 coding downstream 7845 10538388 ~ 10539846 (+)
CI01000001_10573770_10582123 LMBR1L coding downstream 43227 10573770 ~ 10582238 (+)
CI01000001_10582439_10582802 NA coding downstream 51835 10582378 ~ 10582821 (+)
CI01000001_10590766_10595793 DHH coding downstream 59893 10590436 ~ 10596238 (+)
CI01000001_10604980_10633286 KMT2D coding downstream 73345 10603888 ~ 10633540 (+)
G19011 NA non-coding upstream 22447 10498633 ~ 10500815 (+)
G18933 NA non-coding upstream 35701 10485148 ~ 10487561 (+)
G18929 NA non-coding upstream 82891 10437326 ~ 10440371 (+)
G18969 NA non-coding upstream 86389 10436653 ~ 10436873 (+)
G18968 NA non-coding upstream 87267 10435770 ~ 10435995 (+)
G19026 NA non-coding downstream 7259 10537802 ~ 10538016 (+)
G19029 NA non-coding downstream 22801 10553344 ~ 10553661 (+)
G19030 NA non-coding downstream 23146 10553689 ~ 10553969 (+)
G19009 NA non-coding downstream 55413 10585956 ~ 10586294 (+)
G19008 NA non-coding downstream 68061 10598604 ~ 10598814 (+)
G18937 NA other upstream 46873 10474984 ~ 10476389 (+)
G18872 NA other upstream 241893 10271146 ~ 10281369 (+)
G18873 NA other upstream 262548 10223879 ~ 10260714 (+)
G18896 NA other upstream 281770 10239900 ~ 10241492 (+)
G19039 NA other downstream 320381 10850924 ~ 10853983 (+)
G19314 NA other downstream 970651 11501194 ~ 11558673 (+)
G19395 NA other downstream 1150779 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2982861 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021732 wnt1 coding NC_007134.7 CM002907.2 27652906 ~ 27658054 (+)