CI01000001_10538498_10539667 (RPS26)


Basic Information

Item Value
gene id CI01000001_10538498_10539667
gene name RPS26
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10538388 ~ 10539846 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10538498_10539667.mRNA
ATATATATAAAGGCTTTTATTATGTTACCCAGAGGCGTCCGGATGCTGCGCGCACTATATAATTGACGTAAAAGTATTTCCGGTCCTCTCTCATGCCTCTCTAAATCAAGATGGTGAGTCTTGCAATCGTTCAGGCAGAGGACCGTCTTTTGTCCTGTTATTATCGCGACGAGTTAACTAAGAAGAGGAGGAATAACGGTCGTGCCAAGAAGGGACGTGGGCATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCAGAAATATCGTGGAGGCTGCGGCTGTAAGGGACATCTCTGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGCAAAGTGGTGAGGAACCGCTCTCGTGAGGCCAGGAAGGACCGTACGCCTCCTCCACGCTTCAGGCCCGCTGGTGGTCCCCCACGAGCCCCTCCAAAACCAATGTGATCTGGAGATATTTGCATACATTTTTATGTAAAGAA
>TU21318
CCTCTCTCATGCCTCTCTAAATCAAGATGACTAAGAAGAGGAGGAATAACGGTCGTGCCAAGAAGGGACGTGGGCATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCAGAAATATCGTGGAGGCTGCGGCTGTAAGGGACATCTCTGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGCAAAGTGGTGAGGAACCGCTCTCGTGAGGCCAGGAAGGACCGTACGCCTCCTCCACGCTTCAGGCCCGCTGGTGGTCCCCCACGAGCCCCTCCAAAACCAATGTGATCTGGAGATATTTGCATACATTTTTATGTAAAGAAATAAAGGTGACTAAAACTAAAATATGTTCTCTTGTTTAATCAAATGAA
>TU21319
CCTCTCTCATGCCTCTCTAAATCAAGATGACTAAGAAGAGGAGGAATAACGGTCGTGCCAAGAAGGGACGTGGGCATGTCCAGCCCATCCGCTGCACAAACTGTGCCCGGTGTGTGCCCAAGGACAAGGCCATCAAGAAGTTTGTCATCAGAAATATCGTGGAGGCTGCGGCTGTAAGGGACATCTCTGAAGCCAGTGTGTTTGACTCCTACGTTTTGCCCAAACTGTATGTGAAGCTGCACTACTGTGTCAGCTGTGCCATCCACAGCAAAGTGGTGAGGAACCGCTCTCGTGAGGCCAGGAAGGACCGTACGCCTCCTCCACGCTTCAGGCCCGCTGGTGGTCCCCCACGAGCCCCTCCAAAACCAATGTGATCTGGAGATATTTGCATACATTTTTATGTAAAGAAATAAAGGTGACTAAAACTAAAATATGTTCTCTTGTTTAATCAAATGAAAATTTGCTGTCATCTAATGTAAGAAAGGTTATATGGGGAAAAAATAAATGTTGGACCTTAAATTTAAGTTTCTACATTTAAGGCAAAAAAATGGTG

Function

symbol description
rps26 Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 10. Orthologous to human RPS26 (ribosomal protein S26).

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process

KEGG:

id description
K02976 RP-S26e, RPS26; small subunit ribosomal protein S26e

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10538498_10539667.mRNA False 556 mRNA 0.50 4 10538388 10539702
TU21318 False 457 TUCP 0.49 4 10538472 10539750
TU21319 True 553 TUCP 0.46 4 10538472 10539846

Neighbor

gene id symbol gene type direction distance location
CI01000001_10525795_10530510 WNT1 coding upstream 7845 10523262 ~ 10530543 (+)
CI01000001_10420931_10426716 NA coding upstream 111241 10420318 ~ 10427147 (+)
CI01000001_10395420_10396473 NA coding upstream 141915 10394851 ~ 10396705 (+)
CI01000001_10328133_10329110 NA coding upstream 209278 10328040 ~ 10329110 (+)
CI01000001_10321783_10325266 NA coding upstream 213083 10321647 ~ 10325305 (+)
CI01000001_10573770_10582123 LMBR1L coding downstream 34068 10573770 ~ 10582238 (+)
CI01000001_10582439_10582802 NA coding downstream 42676 10582378 ~ 10582821 (+)
CI01000001_10590766_10595793 DHH coding downstream 50734 10590436 ~ 10596238 (+)
CI01000001_10604980_10633286 KMT2D coding downstream 64186 10603888 ~ 10633540 (+)
CI01000001_10688354_10691353 NA coding downstream 148160 10687862 ~ 10691409 (+)
G19026 NA non-coding upstream 372 10537802 ~ 10538016 (+)
G19011 NA non-coding upstream 37573 10498633 ~ 10500815 (+)
G18933 NA non-coding upstream 50827 10485148 ~ 10487561 (+)
G18929 NA non-coding upstream 98017 10437326 ~ 10440371 (+)
G18969 NA non-coding upstream 101515 10436653 ~ 10436873 (+)
G19029 NA non-coding downstream 13642 10553344 ~ 10553661 (+)
G19030 NA non-coding downstream 13987 10553689 ~ 10553969 (+)
G19009 NA non-coding downstream 46254 10585956 ~ 10586294 (+)
G19008 NA non-coding downstream 58902 10598604 ~ 10598814 (+)
G18997 NA non-coding downstream 59324 10599026 ~ 10599251 (+)
G18937 NA other upstream 61999 10474984 ~ 10476389 (+)
G18872 NA other upstream 257019 10271146 ~ 10281369 (+)
G18873 NA other upstream 277674 10223879 ~ 10260714 (+)
G18896 NA other upstream 296896 10239900 ~ 10241492 (+)
G19039 NA other downstream 311222 10850924 ~ 10853983 (+)
G19314 NA other downstream 961492 11501194 ~ 11558673 (+)
G19395 NA other downstream 1141620 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2973702 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021733 rps26 coding NC_007134.7 CM002907.2 27675581 ~ 27677516 (+)