lama4 (lama4)


Basic Information

Item Value
gene id lama4
gene name lama4
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2596412 ~ 2632143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043219999.1
GCAGGGCAGGGCGTAAGCGAGAGAAGAAGAGAACAGCAGTGTAGACTACATAGGCTTGAGTAAGGACAAAAAATAACCAAGGGGAGAAGTAGATGGGCCAAAGACTATAACAGGGAACACGACAACACATACTGTCTGGGCATTTAGAGTTGTTTGCGGGGGGAATCATGGCCTCTCTGCTGTTTGGATCTATCTGTGCTCTCTGCATCTTGTCAACACTCACGCACACAGCTTCTTCACAAGAGTTCAACACAGTCTACAGGGTATGTGCACGAGGTTTCTTCTTGAGTGAGCAGGCAACATGTCTTTCCTGTAACTGCAAAGGCCATGCTGACAGCTGCGAGGACATTACTGGGATATGCAGAGAATGTCAGGACCACACTGTTGGAGATTTCTGTGAGCAATGTGAAGATAGATATTTACCCATTTTTCTTCCTGACGGTACCTTTGTGTGTAGACCATGTGCCTGCCCACTGTCGCTGGAATCTAACAActTTGCAACTCACTGTGATAAGAGAGGTAGTTTTCTGAGATGCGTTTGCCAGGAAGGGCATGCTGGTCACTACTGTGAAAGATGTGCTCCAGGTTTCTATGGCAATCCAATGGAGGTGGGCAATTCCTGCAAAAAGTGTGACTGTAATAGCAACTCTGACCCAAACCTTATCTTCAATGAGTGCAATAATGTGACTGGCCAGTGTCTGAACTGTTGGGGTAACACCAGTGGTGACAACTGTGAAAGATGTGCACCAGGTTTCTATGGAGATGCCATCAGTGCCAAAGACTGTAGGGAGTGTCAGTGCGATAAGTGTGGTACTGCATCATGTGATGACAGGACAGGTGTTTGTCACTGTAAGCCTGGAGTCACAGGTCACCTGTGTGACAGATGTGAGGAGGGTTATTCTGGATTTGGCAGCTGTTTGGGTTGCCGTCGTTGTGAGTGTGCCTCTGCCGCTCTTCGTGCAACCTGCCACCCTCTTACACACAGCTGCCAGTGCCGCCCAGGGGCTGGAGGACGGTACTGCGAGCGCTGCCTGCCAGGATTTTGGGATTACAGTCCATCCGGCTGCAAGAAATGTGATTGTCCAGAGGAGAACTGTGACATGCACACAGGAGAGTGTCTACCTGAGGCCTCGAAAATCAGCGAGTGTAATATCGACTGTGATGCGTGTATCTGGAGTCTGATTGGAGATATTCGTCAGTCCAACAAAACTCTGGACCAAGTGAAGAACAGCGTGCTGAACATTTCTACAGGAGCTGCTGCCAACGACAGATTAAAGTACTACAACTACACTGCACACAGACTACAGGATCAGTTTTTAGGCTGGAAAAATAAGTATGCAGTGATGAGAGCAGACACGGGGCGTCTGGAggaagaaacacaaacactgcttaTTGACATGGAGCTGGTTTCAGATGAGgAAGAAACAGTGCAGTTATTGGGAAAACAGGTGGATCAAGACACACTTGATAGCTCCACACTGGCAAATACGCTTATTGCTAACATCTCATCACTCAACAATCTCATTGAAGatATGATCAGGGATTGGGAATTATATGGTGTCTATCAGGAGTTAGATCCTCAGGTAAAGCTGCAGAAAATAGCAGAAGCTGAGCGAATCTTGGGCTGGATGAGAAATCTGGACCTCTCTTCCAAAGAGCCGCTTGCTACTGATGAGTCCTCTGAGGCCCATgaatTGCTCCGACGCGTGCGACAATTTGAGAAAACTTTGATGACTACACAGGGGCGTCTGTCGCCTATGCAGGAAGTGCTGGGTCGATTCACCTCCAGACTCTTTCAAGCTCAGGATACCCTCAACAAAGCTGAAGACACACTGCAACAGGCACTCAACAAATACAAGACCAACCAGCTCAAGATACAGAGAAGAGAGgCACAGCAGCAGCGTCTCAAAGACAACTATGACAATGTCAGTCAAACTTCTATGACTGCCGGTGTAATTATCTCTGAGGCAAACCAGACTGTCCTTGAGGTGGAGGATATGATCACGAATGTGAGAGAACAGCATGCAGAAATCGATGGGGCTCGTGTCTTACtggagaaaaagacagagaagTTGTCTCAGTCAGACAGAGATCTAGTTCTGAGAGCCGAAGCTCATGCTGATGATCTACAAAGACATGCTGATGAACTTCAGTAcaATTTGAAAGGAAGTGATGCAAATGGACATGTACAGAAAGCCCTGAATGCCTTGAATGTGTATGACCATATCGTCGAAAACATAGATGATGCTAACATCACTGCCCTGACCACTTTCAACATCTCCAGCAGTACTCATGACGCTATTGATGTATTAAACTCTCAACTGAATCTTGCGCGCTCTCAGAGTAATGATATCTTCACAGAGGCCTCATCCTTGTACTTTAAGCAGAAAGatgTTGAATCAATAGTCCttgacaataaaaaatacattgaagAGACCAATGAAATGATGGAAAGCTCCTCTACAAAAATAGCTAAGATCATTAGTGACATCAATACAATTCATAAAGATCGTACTCCAAAACGCCTGCAGTTCACTCAAGAAGTGGCTGAGGGCACTCTGAACCGCTCTGCTGAAGTATTGCAGATGGTGACACCAATCTTAAAGAAAGTGAAGGAATGGGATAGCAACATGAAAAATGAGGCGTACTCCGCCGATGCTTTTGACCGCACTGTTCTGTCTGCTGGAGAGGCAGTTGAAGACCTGTCAGAGATTGTGCCAGAGCTACTCAGTAAGCTGCGTGTggttgaagaaaaaaaacctgttaataATGTCTCCACAAACATCATGAAAATCAGAGAACTCATTGCACAGGCCCGCAGCGTGGCAAAGAAGGTGCAAGTGTCCATGAAATTTAATGGGCAGTCATCTGTAGAAGTTCATCCCCATTCCAACCTAGATGAGCTAAAGAGCGTCACTTCCATCAGTTTCTACATTAGAGTGGACCCGGACAAAGACCCCATAGAAGATCGTTTTCTACTTTACTTGGGAGACAAGCAAGGACGTAAAGACTACATGGGACTGGCCATAAAGAACGATAATCTGGTGTATGTGTATAATCTGGGAGGAGACGTCGTAGAGATTCCTCTCAGTTCAAAGCCAGTTAGTTCCTGGCCTCCTGTCTTCAATCTTGTTAAAGTGGAGAGGTTGGGTCGGCATGGTAAAGTGTTCCTGACGGTTCCAAGTCAAGACACTACCGCAGAGCAGAAGTTTATCCAAAAAGGAGAGGCAGATGGGACAGACTCCTTGTTTGATCTTGATCCTAAAGACAATGTTTTCATCGTGGGAGGAGTGCCTCCTGATGTAAagCTTCCTCCAGCTTTGACTTTGGCTCCTTTTGTTGGTTGCATTGAATTAGAGACTTTGAATAGTGATGTCATCAGTTTGTACAACTTCAAACAACTTCACAAAATGAATGTTGTGGAATCTATGCCTTGTCCCAGGCATAAGTTGGCCTTCTCTCAAAGTCGTGTGACAAGTTATTTGTTTGACGGCAGTGGCTTTGCTTTAGTCAACAACATTGAAAAAAGAGGCAAAATTGGCATTGTTACTCGGTTTGATATTGAAGTTCGAACTGTTGCCAACAGTGGTATTCTGTTCCTCATGGTTAACGAGGCAAATTTTTTCGTGCTGGAGCTGAAAAATGGGTTTCTCCGTCTGATGTACGACTTTGGTTTTACTAATGGCCCTGTCATCATGGAGAGTAACTTAGCCAAACTCCAGATCAACGATGCTCGATATCATGAGgtgtCTGTAATATATCATCACTCTAAGAAGATCATTTTGCTGGTGGACAGAAGCCATGTGAAGTccatggaaaatgaaaagaaaactttaccgttctctgatatatatattggaGGAGCTCCTTCTAGCATTCTTCTTTCTAGACCAGAGCTGTCATCCCTAGTGGGACTGAAGGGTTGTGTTAAAGGCTTCCAGTTCCAGAAAAAGGACTTCAATCTTCTGGAGGAGCAGGGAACCATTGGCATCAGCAGTGGCTGTCCTGAGGAATCATTTATGTCCCGTAAGGTGTATTTCACGGGTGATGGCTATCTGGGCTCTACAGCTAAAATCTCACCATTCCAGTCTTTTGAAGGAGGACTAAACTTCAGAACACTACAGTCCAATGGGCTCCTGTTCTACCACAGAGATGGGCTGGATGAGTTTTCTCTCTCACTGGAGAATGGTGCTGTGGTACTCCAGTCCAAAGGAACCAGAGTCAGATCACAAAAGAAGAATTATAATGATGGACGATCTCATTTCTTAGTTGCCTCAGTCACCAATCAAAAGTATGAACTTGTAATTGATGACAAAGACAAGCAGGAAAAGAAGAAGCAGTCTTCCTCATCTCAGTCAGATAATATTCCAAAGTCTTTCTACTATGGAGGCTCTCCTACGAGTTCCATACAGAATTTCACTGGGTGCATCAGTTACGCATACCTCAGCAGGCAGGATAGAGATATAGAGCCAGAAGACTTCCAACGTTACACAGACACTGTGCAGGTATTGCTCCAGGACTGCCCATTAGAGAGACCCCCTATTGCTCTGCACAAAGACAGCAGAGATTCATCTAGAAGAAGTCCAGGACACTCCCGCAAGGTGGGCAGGGATGAGTCTAGCCTGCCACATGGCTTGAAGAACAATCCTTTGGATATTCCGGAGACAGAGGCTGCTTCCTGTTACCTGTCCTCACGTCCTCGAGTGACACGCCACGCTCACCACTATGGCGGATTTGCCCACAGCCGACATGAGTATACAGGCATTGCCAGTGTTATCAGAGATGAATCTCACTTTTCTTTGTCATTGAAAACTCAATCAGCATTCGGACTCATCTTCTACCTGGCTGACAAATCTGAGGAGAACTTCATGGCTCTGTTCCTCTCTCATGGAAGGCTGGTATTCACATTCAGCTCGGGCCAGAACCAAGTCAGAATCAGTTCCAAAGAGAAATACAGTAATGGACAGTGGCATGATATCATCTTTATCAGAAGTGGAAATACTGGCAGATTGATCATTGACGGTCTTACGGTATTAGAGGACAAAGCTCCAGGCACAAACCTCTCACTGCTTGTCCAAGATCCTCTCTTTGTAGGTGGGGTGCCGCCTGATCAGGCCAAGAAAAACATTCAGAAGATGTTTGTGTCTGGCTTCTCTGGATGTGTGCGAAGTCTCCAGCTGAATGGCCGTTGGCTCACCTCTGCCTCCCACAGTTTTGGGGTCACACCCTGTTATGAGGGCCCCTCTGAACCAGGGACATACTTCACTGAGGAGGGAGGATATGTGTTGCTGGATGACTCCCTTAATTTTGGCTCAAGATTTAAGATGGCAATCGAGGTGCGCCCTCGTCTGGCGTCAGGAGTGCTACTGCATGTCTTCACCGGAGAGAAGCAATATCTCACCCTGTACATATATCAAAACAAGGTGGTTGTTGCGGTGAATAATGGCATCCATGAGTTCTCCACCTATGTGTCTCCCAGACAAGAAATCTGTGACGGAAACTGGCACAAAATCACAGTGATCAGAGATGGTAACGTGGTGCAGCTGGATGTGGATTCAGAGGTAAATCATGTTGTGGGGCCTGTTCATGAAACGCCACAAAACAGCAGCTCTCCAGTGTTTATTGGAGGAGCCCCAGACTCCATGCTGCCTCACAGTCTCCACAGCAGGAGGGGCTACACGGGTTGCGTGAGGAACCTGTCTATGAACGAGTCTCCTGTGAGCTTCAGTAAAGTGGCGTTGGTCAGCGGTGCAGTCGGTGTGGGCGCCTGTCCTGCTGCTTGAGAGGCTGAAAACAGAACTCTCCCTGTGTCATTGCTTGCGTTTCAGTAAAGAATGAAGCACCACTGTCACTGTGTCTTCAGCATCATTTATAGCTATAGTATTCTATCACtatgaaaaatttaattaatcacTACACTGGTACTGTAAACCAGAGCACTGCAAGCACTGTGTTAAACTAATACAAAAAGATATTAAACTGAGGTTTATAATTTCTAAAAACCTGATAATTTAcacaaatatgcacaaaatattaacaaaaccaTAGTATAccttaataaagcatttttttctga

Function

symbol description
lama4 Predicted to enable signaling receptor binding activity. Acts upstream of or within several processes, including endothelial cell development; muscle attachment; and notochord development. Predicted to be part of laminin complex. Is expressed in several structures, including cardiovascular system; head; mesoderm; pectoral fin; and trunk musculature. Human ortholog(s) of this gene implicated in dilated cardiomyopathy 1JJ. Orthologous to human LAMA4 (laminin subunit alpha 4).

NR:

description
laminin subunit alpha-4-like

GO:

id name namespace
GO:0045995 regulation of embryonic development biological_process
GO:0030155 regulation of cell adhesion biological_process
GO:0048514 blood vessel morphogenesis biological_process
GO:0016203 muscle attachment biological_process
GO:0030334 regulation of cell migration biological_process
GO:0030903 notochord development biological_process
GO:0005606 laminin-1 complex cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG:

id description
K06241 LAMA4; laminin, alpha 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043219999.1 True 6076 mRNA 0.46 40 2596412 2632143

Neighbor

gene id symbol gene type direction distance location
tube1 tube1,LOC107670257,LOC107703869 coding downstream 1616 2584067 ~ 2594796 (-)
si:dkey-119m7.4 si:dkey-119m7.4,LOC107704351,LOC107670234,LOC107565461,LOC107755002,LOC107709524 coding downstream 45713 2538637 ~ 2550699 (-)
fynb fyn,fynb,LOC107704353,LOC107755004,LOC103458010 coding downstream 63285 2480372 ~ 2533127 (-)
ndufaf4 LOC107755001,LOC107565458 coding downstream 117598 2474871 ~ 2478814 (-)
gpr63 LOC107755000,LOC107670245,LOC107565457,LOC107750403,LOC107676696 coding downstream 122419 2466383 ~ 2473993 (-)
ndufaf7 ndufaf7,LOC107752688,LOC107670241 coding upstream 31635 2663778 ~ 2670855 (-)
LOC122325188 LOC107714796,LOC107565462,LOC107670243,LOC107550532,LOC107676708,LOC107715681,LOC105017614,LOC106607890 coding upstream 129003 2761146 ~ 2778825 (-)
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding upstream 154996 2787139 ~ 2848625 (-)
LOC122324357 tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823 coding upstream 499938 3132081 ~ 3179282 (-)
LOC122324803 rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701 coding upstream 564170 3196313 ~ 3220549 (-)
G135629 NA non-coding downstream 16710 2579269 ~ 2579702 (-)
G135627 NA non-coding downstream 18924 2577132 ~ 2577488 (-)
G135546 NA non-coding downstream 237721 2358478 ~ 2358691 (-)
G135542 NA non-coding downstream 496171 2099996 ~ 2100241 (-)
G135480 NA non-coding downstream 718290 1877914 ~ 1878122 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 12038 2644181 ~ 2647081 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding upstream 100460 2732603 ~ 2737889 (-)
G135691 NA non-coding upstream 126954 2759097 ~ 2760884 (-)
G135781 NA non-coding upstream 227124 2859267 ~ 3231374 (-)
G135782 NA non-coding upstream 234651 2866794 ~ 3238869 (-)
G135548 NA other downstream 231588 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 582885 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 720120 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 935876 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 1024713 1546487 ~ 1571699 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 108409 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1006146 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 1336620 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 1932213 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 2379238 5011381 ~ 5012580 (-)

Expression


Co-expression Network