prdx6 (prdx6,LOC107712864,LOC107597803)


Basic Information

Item Value
gene id prdx6
gene name prdx6,LOC107712864,LOC107597803
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8130352 ~ 8135031 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220007.1
CCCCGTCTTCCTGATACATACAGGCGTCCATTCCGCGCGTCCACGTGCCGACCCTAACAAGTCCGCAGGAAAACAGTCATGCCTGGAATTCTCTTGGGAGACGTTTTCCCCAACTTTGAAGCAGAGACCACTATCGGCAAGATCAAATTTCACGACTTCTTGGGAAATTCTTGGGGTATCTTGTTCTCACACCCACGTGACTTCACTCCAGTATGTACGACTGAGCTTGCCCGCGCTGCGAAGCTTCACGATGAGTTCAAGAAGCGTGACGTGAAGATGATCGCCCTGTCCATCGACAGCGTGGAGGACCACCGCAAGTGGAGCGAGGACATCTTGTCGTTTAACCAAGACAAAGCCTGCTGTCCCATGCCTTTCCCCATCATCGCGGATGACAAGAGGGAGTTATCAGTCTTACTGGGGATGCTGGACCCCGATGAGAGGGATAAAGATGGGATGCCCCTCACTGCCCGCTGCGTGTTTGTTGTTGGCCCAGATAAGCGGCTGAAGCTGTCCATTCTCTATCCAGCCACCACGGGGCGCAATTTCGATGAGATCCTCCGCGTCATAGACTCTCTGCAGCTGACCGCGACCAAGAAAGTGGCCACCCCTGTGGACTGGAAGcCTGGTCAAGAAGTCATGGTCATCCCTTCTTTGTCAGATGAAGAGGCCAACAAACTTTTCCCAGCAGGGTTTACTCTCAAAGAGGTGCCTTCTGGGAAAAAATACATACGCTACACTAAACCGTAACTGATATATTGGGGCAATCCTGTAGAAATAACAGCACTTAACGGGCATCACATTTTAGTTCAGTTGATGTGGTGCGTTCTGACTTGACTACATGACCCCTTTCACTTGTAAGGTCATTACATACAATCTAATTATTGTATTGTGCCTTAATCTCAATAAAACCCACTGTACTTTTGTAATTTCAAAA

Function

symbol description
prdx6 Predicted to enable peroxidase activity and peroxiredoxin activity. Predicted to be involved in cell redox homeostasis. Predicted to be active in cytosol and mitochondrion. Is expressed in alar plate midbrain region; digestive system; immature eye; nervous system; and otic vesicle. Orthologous to human PRDX6 (peroxiredoxin 6).

NR:

description
peroxiredoxin-6-like isoform X1

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016209 antioxidant activity molecular_function
GO:0051920 peroxiredoxin activity molecular_function

KEGG:

id description
K11188 PRDX6; peroxiredoxin 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220007.1 True 934 mRNA 0.49 5 8130352 8135031

Neighbor

gene id symbol gene type direction distance location
jun jun,LOC107712863,LOC107581481,LOC107739852 coding downstream 129821 7998591 ~ 8000531 (-)
LOC122324580 si:dkey-86e18.2,LOC107658157,LOC107739861,LOC107597817 coding downstream 133914 7992597 ~ 7996438 (-)
si:dkey-86e18.1 LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794 coding downstream 138043 7985891 ~ 7992309 (-)
faslg LOC107581522,LOC107669138,LOC107712839 coding downstream 147302 7980679 ~ 7983050 (-)
angptl1a angptl1,angptl1a,LOC107669140,LOC107712858,LOC107658173,LOC107739855 coding downstream 255781 7857022 ~ 7874571 (-)
myoc myoc,LOC107669152,LOC107581474,LOC107712866,LOC107697243,LOC107733809 coding upstream 116421 8251452 ~ 8257991 (-)
vamp4 vamp4,LOC107712870,LOC107733808 coding upstream 126727 8261758 ~ 8271223 (-)
itpa itpa,LOC107712840 coding upstream 149011 8284042 ~ 8287245 (-)
tmed5 tmed5,LOC107733818,LOC107597813,LOC107712842,LOC107581519,LOC108415774 coding upstream 201576 8336607 ~ 8340950 (-)
LOC122324856 LOC107733811 coding upstream 267768 8402799 ~ 8408257 (-)
G136804 NA non-coding downstream 217788 7912148 ~ 7912564 (-)
G136792 NA non-coding downstream 237027 7890258 ~ 7893325 (-)
G136763 NA non-coding downstream 348119 7677116 ~ 7782233 (-)
G136772 LOC107721802,LOC107712829,LOC107658155,LOC107669132 non-coding downstream 358521 7669580 ~ 7771831 (-)
LOC122325257 NA non-coding upstream 18634 8153665 ~ 8182659 (-)
G136909 NA non-coding upstream 67869 8202900 ~ 8207944 (-)
G136935 NA non-coding upstream 126052 8261083 ~ 8261292 (-)
LOC122325283 NA non-coding upstream 176460 8311491 ~ 8313967 (-)
G136962 LOC107687343,LOC107581497,LOC107697261,LOC107712873,LOC107597796 non-coding upstream 240454 8375485 ~ 8637526 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other downstream 330763 7785602 ~ 7799589 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other downstream 434287 7693955 ~ 7696065 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 528750 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 693854 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 701070 7424836 ~ 7429282 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 188082 8323113 ~ 8644759 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other upstream 456661 8591692 ~ 8600955 (-)
G137054 LOC107660256,LOC107566921 other upstream 683823 8818854 ~ 8819327 (-)
G137056 NA other upstream 686123 8821154 ~ 8821719 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other upstream 1120517 9255548 ~ 9283383 (-)

Expression


Co-expression Network