gsx2 (gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430)


Basic Information

Item Value
gene id gsx2
gene name gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11366923 ~ 11368490 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220026.1
TAAGAGCACTGTGTACTGCGCGCGTCCTTGGAGCAACGCCATCAGTGCGGTATCACTGACACCATCAGCgtcacacacagacaggagCGATCATGTCGAGGTCTTTCTACGTAGACTCTTTGATTATCAAGGATCCCGCTCGCCCGGTTCTCAGCGAGCACGCGGGGCAGGACTTTCTCATCCCCATTGGCATGCACTCTCCCGGAGTGATGAGCGTCACTGCGCCCGTTTGCCCGTCCCGGAAGACCGGCACTTTCTGCGTCTGTCCGCTGTGCGTAACCTCGCATATCCACTCTCCCCGCGCCGGGATCCCGCTGCTGAAGGGACAGGGCTTCTCCGCCGGTGACGCGGCTTTCTGTCAGAGGGTAGCACATCAACAGAGCTCCGCGTTAGCGCACCCGGGACACGGACACCCGCCCACAAGCTACAGCGTCACTGACCCTCGGAGGTACCACTGTTTGTCTCTAGGTGCGTCCGACAACGGCCACATACAGAACGGCAAGCGGATGCGCACCGCCTTCACCAGCACCCAGCTGCTCGAGTTGGAGCGCGAGTTCTCGTCTAACATGTACCTCTCCCGCTTGCGCAGGATCGAAATAGCCACGTATTTAAACCTCTCGGAGAAACAGGTGAAAATATGGTTTCAGAACCGCCGCgttaaacacaagaaagaaGGCAAAGGCGCGCAACGCAGCGCGCACGCGGGGTGCAAATGCTCGGGCGGTCACTCACACTACCCGCGCTCGGAGGACGAAGAATCTCTGTCACCTGTGTCAGCAACAGAGGAGAAGGAGACATCACCTATTTAGGGGCGTCTCGAACACCACAGACTTACGTTTGGTACCCTGCATGGCACATATAAACGTACGGATCCGTTAAAACGATTGACTTAACGGGACGCTGTCTTCCATATTTCCATAACCAGAAGGGTATGGAAGTTTAGCTACTATACCAATTCCTCCCTCGTTCCTCTTAAAGTATTGTTTTACCCCGACACTTGAGTGTTATCTGTCTTATCCGTATACTACAAACTGTGAAATGATAATTCAGTGATGcaagtaaaatgtgtttttttgcagttgaGGTGAAAACGTTTTTGAAACGACCACGGATGATCCACGATGTCTTCCTTGCTCTTTGAAGAATAAATGTTGGATATATAGAGAAGATAAAAGGCTCCCTGTGTGATACTGTAAATACGCAGACTGTTAATCCGACCTGTCCTAGACTACTGagaaactgtgatttttttttcacctgaatTTTATGTGCATATTAAAGAAAAcgtgtatatttgtatttatttaaataaaatgacttctgTAACTACA
>XR_006247255.1
TAAGAGCACTGTGTACTGCGCGCGTCCTTGGAGCAACGCCATCAGTGCGGTATCACTGACACCATCAGCgtcacacacagacaggagCGATCATGTCGAGGTCTTTCTACGTAGACTCTTTGATTATCAAGGATCCCGCTCGCCCGGTTCTCAGCGAGCACGCGGGGCAGGACTTTCTCATCCCCATTGGCATGCACTCTCCCGGAGTGATGAGCGTCACTGCGCCCGTTTGCCCGTCCCGGAAGACCGGCACTTTCTGCGTCTGTCCGCTGTGCGTAACCTCGCATATCCACTCTCCCCGCGCCGGGATCCCGCTGCTGAAGGGACAGGGCTTCTCCGCCGGTGACGCGGCTTTCTGTCAGAGGGTAGCACATCAACAGAGCTCCGCGTTAGCGCACCCGGGACACGGACACCCGCCCACAAGCTACAGCGTCACTGACCCTCGGAGGTACCACTGTTTGTCTCTAGGTGCGTCCGACAACGGCCACATACAGAACGGCAAGCGGATGCGCACCGCCTTCACCAGCACCCAGCTGCTCGAGTTGGAGCGCGAGTTCTCGTCTAACATGTACCTCTCCCGCTTGCGCAGGATCGAAATAGCCACGTATTTAAACCTCTCGGAGAAACAGGTGAAAATATGGTTTCAGAACCGCCGCgttaaacacaagaaagaaGGCAAAGGCGCGCAACGCAGCGCGCACGCGGGGTGCAAATGCTCGGGCGGTCACTCACACTACCCGCGCTCGGAGGACGAAGAATCTCTGTCACCTGTGTCAGCAACAGAGGAGAAGGAGACATCACCTATTTAGGGGCGTCTCGAACACCACAGACTTACGTTTGGTACCCTGCATGGCACATATAAACGTACGGATCCGTTAAAACGATTGACTTAACGGGACGCTGTCTTCCATATTTCCATAACCAGAAGGttgaGGTGAAAACGTTTTTGAAACGACCACGGATGATCCACGATGTCTTCCTTGCTCTTTGAAGAATAAATGTTGGATATATAGAGAAGATAAAAGGCTCCCTGTGTGATACTGTAAATACGCAGACTGTTAATCCGACCTGTCCTAGACTACTGagaaactgtgatttttttttcacctgaatTTTATGTGCATATTAAAGAAAAcgtgtatatttgtatttatttaaataaaatgacttctgTAACTACA

Function

symbol description
gsx2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific double-stranded DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human GSX2 (GS homeobox 2).

NR:

description
GS homeobox 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09310 GSH; homeobox protein GSH

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220026.1 True 1331 mRNA 0.50 2 11366923 11368490
XR_006247255.1 False 1181 transcript 0.52 3 11366923 11368490

Neighbor

gene id symbol gene type direction distance location
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding downstream 6884 11339863 ~ 11360039 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding downstream 47004 11301144 ~ 11319919 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 299517 11061914 ~ 11067406 (-)
trnal-cag_34 NA coding downstream 434279 10932562 ~ 10932644 (-)
eif2b4 eif2b4,LOC107723173,LOC107589057,LOC107697314,LOC107701499,LOC107561932 coding downstream 434608 10925463 ~ 10932315 (-)
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding upstream 115647 11484137 ~ 11506327 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding upstream 236140 11604630 ~ 11607753 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding upstream 300650 11669140 ~ 11676651 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 324292 11692782 ~ 11704023 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding upstream 344452 11712942 ~ 11716297 (-)
G137644 NA non-coding downstream 139558 11215226 ~ 11227365 (-)
G137621 LOC107739294,LOC107553647 non-coding downstream 172076 11191659 ~ 11194847 (-)
LOC122325111 NA non-coding downstream 251998 11113796 ~ 11114925 (-)
LOC122325152 NA non-coding downstream 429549 10934946 ~ 10937374 (-)
G137588 NA non-coding downstream 560143 10806521 ~ 10806780 (-)
G137751 NA non-coding upstream 243533 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 255103 11623593 ~ 11631094 (-)
G137748 NA non-coding upstream 260134 11628624 ~ 11631015 (-)
LOC122325628 NA non-coding upstream 260638 11629128 ~ 11629249 (-)
LOC122325626 NA non-coding upstream 261230 11629720 ~ 11629841 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 184740 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 230311 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 642854 10721921 ~ 10724069 (-)
G137451 NA other downstream 796186 10567297 ~ 10570737 (-)
G137330 NA other downstream 1428046 9937965 ~ 9938877 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 313915 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 850273 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 854320 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 873311 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1892429 13260919 ~ 13264284 (-)

Expression


Co-expression Network