trmt6 (trmt6,LOC107667616,LOC107697184,LOC107593280)


Basic Information

Item Value
gene id trmt6
gene name trmt6,LOC107667616,LOC107697184,LOC107593280
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 22046439 ~ 22057214 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220028.1
TTTCGGAACAGGAAGTGACAGAACACACGTGCGCAAAGAAGCATCGTTTGTGTGAAATTACCCTTCTGTTTGTAGACATAGACGTCGCTTTTCGTTCGGGATAGTTAAAGTGTAAACTAGTTTTCAAACATCCTCCTGTCGACCTTTATCCGCGCTGATCGCAGTCAATGGCGGAGTGTGCAAATGACAGCGATGCGGAGATCAGAATCGGTTACGGAGACTATGTAGTGCTGAAGAGAGGAGATGTGTTCAAATCCGTGCagattgaaaataaaaaGAAAGTGATCTTCGAGAAGCAGTGGTTCTTCTTGGATAACGCGGTCGGGCAGCTGTACGGGGCCATGTTTGAAATCGAAGCCGGCGGTTCGCTCAAACTTAAGGCAGCAAAACACTCAGGAGACTCTTTGGATTCTAAAGAAGCAGGCCAGGATAATAGACACATAGTGGATGATGGCAGATCTCAGAAACTGACCAGAGATGATATTGAAACACTGAAAGAGCAGGGGTTAAAAGGCCAGGAGATTGTCCAGCAGCTCATAGACAACAGTACAACGTTCAAGGACAAAACTGAATTTGCTCAAGAGAAGTACatcaagaagaaaaagaaaaaGTACGAGAGTGACATAACGATCCTGAAACCCTCCACTCGACTCCTTGCCATGATGTACCACGGAAGAGAACCAGGGAAAATATGtCATCTGCGGTACGACACATTAGCTCAGATTTTGACTCTGGGTAACATCCACGCTTGCagtaaaatcattgtttttgaGACCTGTGCTGGACTTGTGTTGGGCTCGGTGATGGAGAGAATGGGAGGTTATGGCTCAGTGATTCAGATGTATCCCGGTGGAGGACCAACGAGAGCCGGCATGGAGAGCTCCGGCTTTCCGTCACACTTCCATAAGACGCTACATGATTTCCCTTTATGCAAAGTTAATGCTCTGTTGGCGGGAACCCTGGACCTGTCGGAGAAGGACGCAGACACTGAGGCCAATTGCAGCGGGAACAGATCCGAGTCTTCTCAGGAAACCTCATGTGTGTCTAAGGAGAAGAACTCAGAACCTCAGAGCATGGAGGTCAGCGTTGACCCTCaagaagaaataaagagagCGGAGAGAGAAAGACTGCGAGAACAGAGGGCTCAAGAGAAAAAGGTTAAGATGgaagaaaagaggaagaaatTAGCTTCAGCTGCTGCTCTGTTAGAGGGCAGAAATGCAGATGGgTTGGTGATTGCTAGTCGCTTTCACCCCTGTCCTGTGTTAATGGGTCTGCTGAAGTTCATAGCACCGTCACGACCGTTCGTAGTGTACTGCCAGTACAGAGAGCCTCTGATTGAGTGCTACACAAAACTCAGGGAACAAGGAGGAGTAATCAATCTCAGATTAACAGATTCCTGGCTCAGGCATTACCAGGTGTTGCCCAACCGGACTCATCCAGTGCTGCTCATGAGTGGAGGTGGAGGGTATCTCCTGTCCGGAACCACAGTTGCCGCAGACGCTGCCAAAGCTAAGAATCAGCACAAATCAGAGGAGCCCCTTGCCAAGAGGCTGAAACTGGATGAGATTAGTTCATCACGTGATAGCTCTGCCTAGcaagaaGTGGAGGAAGGAAAGCATGCGTTGCTTTTTCGCCATCCTCTGCACTTGGCAAATAACCAAGTTTCGCTCACAAAATTGCATCATTGCCCAAGTaaacatttatgcttttaatgGTTTTCGAAAGGCTTTACAgcatcaaaacacaaatgataaCCACATTGGTAAGCTTTGGTCccataattacacatttttattaaacgtAAACAATGCAGAGAATCCATGGAAAGCCATAAAGAACAACAGCAATTTtcaaacatactgtatttttcacaGTTGTAAAGTAGCATGCTCTTAAACGCATTCAGATTTGCAGTCGATAGTACATgggcatttttgtttttttttttttttttttgttttaccttaGGATGTAATAAAGAGAGAAATGTTTCGCATTGTA
>XM_043220029.1
TTTCGGAACAGGAAGTGACAGAACACACGTGCGCAAAGAAGCATCGTTTGTGTGAAATTACCCTTCTGTTTGTAGACATAGACGTCGCTTTTCGTTCGGGATAGTTAAAGTGTAAACTAGTTTTCAAACATCCTCCTGTCGACCTTTATCCGCGCTGATCGCAGTCAATGGCGGAGTGTGCAAATGACAGCGATGCGGAGATCAGAATCGGTTACGGAGACTATGTAGTGCTGAAGAGAGGAGATGTGTTCAAATCCGTGCagattgaaaataaaaaGAAAGTGATCTTCGAGAAGCAGTGGTTCTTCTTGGATAACGCGGTCGGGCAGCTGTACGGGGCCATGTTTGAAATCGAAGCCGGCGGTTCGCTCAAACTTAAGGCAGCAAAACACTCAGGAGACTCTTTGGATTCTAAAGAAGCAGGCCAGGATAATAGACACATAGTGGATGATGGCAGATCTCAGAAACTGACCAGAGATGATATTGAAACACTGAAAGAGCAGGGGTTAAAAGGCCAGGAGATTGTCCAGCAGCTCATAGACAACAGTACAACGTTCAAGGACAAAACTGAATTTGCTCAAGAGAAGTACatcaagaagaaaaagaaaaaGTACGAGAGTGACATAACGATCCTGAAACCCTCCACTCGACTCCTTGCCATGATGTACCACGGAAGAGAACCAGGGAAAATATGtCATCTGCGGTACGACACATTAGCTCAGATTTTGACTCTGGGTAACATCCACGCTTGCagtaaaatcattgtttttgaGACCTGTGCTGGACTTGTGTTGGGCTCGGTGATGGAGAGAATGGGAGGTTATGGCTCAGTGATTCAGATGTATCCCGGTGGAGGACCAACGAGAGCCGGCATGGAGAGCTCCGGCTTTCCGTCACACTTCCATAAGACGCTACATGATTTCCCTTTATGCAAAGTTAATGCTCTGTTGGCGGGAACCCTGGACCTGTCGGAGAAGGACGCAGACACTGAGGCCAATTGCAGCGGGAACAGATCCGAGTCTTCTCAGGAAACCTCATGTGTGTCTAAGGAGAAGAACTCAGAACCTCAGAGCATGGAGGTCAGCGTTGACCCTCaagaagaaataaagagagCGGAGAGAGAAAGACTGCGAGAACAGAGGGCTCAAGAGAAAAAGGTTAAGATGgaagaaaagaggaagaaatTAGCTTCAGCTGCTGCTCTGTTAGAGGGCAGAAATGCAGATGGgTTGGTGATTGCTAGTCGCTTTCACCCCTGTCCTGTGTTAATGGGTCTGCTGAAGTTCATAGCACCGTCACGACCGTTCGTAGTGTACTGCCAGTACAGAGAGCCTCTGATTGAGTGCTACACAAAACTCAGGGAACAAGGAGGAGTAATCAATCTCAGATTAACAGATTCCTGGCTCAGGCATTACCAGGTGTTGCCCAACCGGACTCATCCAGTGCTGCTCATGAGTGGAGGTGGAGGGTATCTCCTGTCCGGAACCACAGTTGCCGCAGACGCTGCCAAAGCTAAGAATCAGCACAAATCAGAGGAGCCCCTTGCCAAGAGGCTGAAACTGGATGAGATTAGTTCATCACGTGATAGCTCTGCCTAGAAAAGCTACAGCATACCAGGTCCTCTCTTCGGCTGTCCTGCTCAACTGGCATGGACTCTCCATCTGGGATAGTAAAGCCTTGAATTATATTTGTGCAAATTTATGCAAAAGCTCATTCATCT

Function

symbol description
trmt6 Predicted to act upstream of or within tRNA methylation. Predicted to be part of tRNA (m1A) methyltransferase complex. Predicted to be active in nucleus. Orthologous to human TRMT6 (tRNA methyltransferase 6 non-catalytic subunit).

NR:

description
tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

GO:

id name namespace
GO:0006446 regulation of translational initiation biological_process
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03256 TRM6, GCD10; tRNA (adenine58-N1)-methyltransferase non-catalytic subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220028.1 True 2004 mRNA 0.45 12 22046439 22053294
XM_043220029.1 False 1720 mRNA 0.48 12 22046439 22057214

Neighbor

gene id symbol gene type direction distance location
fermt1 fermt1,LOC107697185,LOC106571740 coding upstream 893 22032996 ~ 22045546 (+)
LOC122325417 taar12j,LOC107756662,LOC107756663,LOC107550380,LOC107550381,LOC107697080,LOC107697079,LOC107756661,LOC107550395 coding upstream 85070 21960347 ~ 21961369 (+)
LOC122325416 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding upstream 90405 21955006 ~ 21956034 (+)
LOC122325419 taar12c,taar12f,LOC107697103,LOC107706946,LOC107550396 coding upstream 94412 21951011 ~ 21952027 (+)
LOC122325415 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding upstream 98011 21947400 ~ 21948428 (+)
gpcpd1 gpcpd1,LOC107593247,LOC107742708,LOC107756671,LOC107697181 coding downstream 10770 22067984 ~ 22082617 (+)
napbb si:rp71-81o21.2,napb,LOC107756672,LOC107667620,LOC107742707,LOC108411873,LOC107593246,LOC103023605,LOC106571745,LOC106610947,LOC100691502 coding downstream 27802 22085016 ~ 22091782 (+)
trib2 trib2,LOC107742704,LOC107667617,LOC107717709,LOC107697179 coding downstream 93222 22150436 ~ 22158928 (+)
LOC122325512 klhl29,LOC107667613,LOC107742703,LOC107697176 coding downstream 228433 22285647 ~ 22394434 (+)
mfsd2b si:dkeyp-115a10.3,mfsd2b,LOC107750078,LOC107697177,LOC107603080,LOC107667608 coding downstream 420847 22478061 ~ 22498608 (+)
G140905 NA non-coding upstream 67891 21933984 ~ 21978548 (+)
G140907 NA non-coding upstream 76489 21967698 ~ 21969950 (+)
G140900 NA non-coding upstream 137106 21908974 ~ 21909333 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding upstream 193318 21850862 ~ 21853121 (+)
G140792 NA non-coding upstream 196304 21849762 ~ 21850135 (+)
G140922 NA non-coding downstream 3849 22061063 ~ 22061533 (+)
G140931 NA non-coding downstream 40697 22097911 ~ 22098292 (+)
LOC122324401 NA non-coding downstream 41191 22098405 ~ 22114867 (+)
G140933 NA non-coding downstream 44024 22101238 ~ 22101461 (+)
G141081 NA non-coding downstream 483904 22541118 ~ 22541327 (+)
G140785 NA other upstream 201738 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 844477 21168775 ~ 21201962 (+)
G140533 NA other upstream 943929 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1254736 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1372050 20673461 ~ 20674389 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 414547 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 449513 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 687198 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 785591 22842805 ~ 22860327 (+)
pln NA other downstream 1286501 23343715 ~ 23351655 (+)

Expression


Co-expression Network