gphnb (gphnb,gphn,LOC107669455,LOC106571666,LOC107730782)


Basic Information

Item Value
gene id gphnb
gene name gphnb,gphn,LOC107669455,LOC106571666,LOC107730782
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24380011 ~ 24453951 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220033.1
CCCTCCAGAGTTCGATGTGCTCGTCTCTCGGCTCTGCCTGGAGTTCTCAGTGCGGCGACAGCGGTGCTGAATATGGCGACAGACGGGATGATTTTAACAAACCACGACCACCAAATCCGGGTCGGCGTCTTGACAGTAAGCGACAGCTGCTTTCACAATCACACCGAGGACCGCAGCGGGATCAACCTCAAAGATCTCGTGCACGACCCTTCCTTGCTTGGAGGAACCATCTCAGCTTACAAAATCGTTCCCGATGAAATTGATGAGATCAAGGAGACTCTGATCGACTGGTGTGATGAGAAAGAGCTGAACCTGATTTTGACCACTGGTGGCACCGGCTTCGCTCCTCGGGATGTCACgcctgaggcCACTAAAGAGGTGATCGAGCGGGAAGCTCCAGGGATGTCTCTGGCCATGCTGGTGGGCTCTCTGAATGTCACTCCTCTGGGAATGCTCTCCAGACCCGTGTGTGGTATCCGAGGAAAAACTCTTATCATAAATTTGCCAGGCAGTAAAAAAGGTTCACAGGAATGCTTCCAGTTCATCCTGCCCGCTCTCCCGCACGCCATCGACCTGCTCCGAGAAGCTGTGGTCAAAGTGAAGGAGGTGCCGAACGAGCTGGAGGACCTGCCCTCGCCTCCGCCTCCTCCGTCCCCGCTGCCCACCAGCAGCCCGCACCGCCAGACCGAGGACAAGGGAGTGCAgtgtgaggaggaggaggaggagaagaaggacAGCGGTGTGGCCTCCACCGAGGACAGCTCCTCCTCGCACATCACCGCCGCCTCCATCGCTGCCAAGATTCCCGACTCCATCATCTCACGGGGCGTCCAGGTCCTTCCTCGTGACACGGCGTCCCTGAGCACCACGCCGTCCGAGTCGCCCAGAGCCCAGGCTACCTCCCGCCTCTCCACCGCTTCCTGTCCCACCCCCAAGGCGCGGCTCCCCTCCTCTTCATCCACCCTAAGCATTGCTGAGGCGTCGCGGCGAGAGTTCAGAGCACACCTGGATGAGGTCATCACACTCAAGTCAAGGTACTCTACCTTGGACCAGCTCCAGTGTAGGTTGGAGGTGCTTAAAGATGATCGCCGTGGCCATAGGACCTTCAGTTCTCGAGTGCAGTCACGATGCAGCAGCAAAGAAAACATCTTACGAGCAAgtCATAGTGCGGTGGACATCACCAAAGTGGCTCGGAGACACCGTATGTCTCCATTCCCTCTCACCTCTATGGATAAAGCCTTCATCACTGTGCTGGAGATGACCGCGGTTCTGGGCACTGAGATCATTAACTACAGGGACGGCATGGGTTATGTTCTGGCTCAGGACGTTTATGCCAAAGACAACCTGCCTCCGTTCCCCGCCTCTGTTAAGGACGGCTACGCCGTAAGAGCGGCCGACGGTCCTGGGGACAGATTTATCGTCGGCGAGTCTCAGGCTGGAGAGCAGccCACACACACCGTGATGCCGTGTCAGGTGATGCGGGTGACGACCGGCGCTCCTATCCCGTGCGGAGCCGACGCTGTGGTTCAAGTAGAAGACACCGAACTCCTGCGAGAGTCTGAAGACGGCACAGAAGAGCTTGAGGTGCGCATTCTGGTCCAGGCTCGTCCAGGTCAAGACATCAGGCCCATCGGTCACGACATCAAGCGCGGCGAATGCGTGCTGGCCAAAGGCACTCACATGGGCCCGTCTGAGATCGGTCTGCTGGCCACGGTGGGCGTCACGGAGGTGGAAGTGCAGAAGTTTCCGGTCGTGGCTGTGATGTCTACAGGCAACGAGCTGCTGAACCCGGAGGATGACCTGCACCCCGGTAAGATCAGAGACTCTAACCGCTCCACGCTGCTGGCCACCATACAGGAGCACGGGTACCCCACCATCAACCTGGGCATCGTGGGAGACAACCCTGACGACCTGCTGAATGCTCTGAACGAGGGAATCAGCCGCGCTGATGTCATCATCACCTCAGGGGGCGTGTCTATGGGAGAGAAGGATTACCTGAAACAGGTACTTGATATCGACCTTCATGCTCAGATACACTTTGGACGTGTCTTCATGAAACCAGGTCTCCCCACAACATTTGCCACTCTTGATATGGACGGGTCTCGAAAACTTATCTTTGCTCTGCCAGGTAATCCTGTGTCGGCGGTCGTAACGTGTAACCTCTTCGTCATTCCTGCCTTGAGGAAGATGCAGGGAATCTTAGACCCGCGGCCCACCATAATAAAAGCCAGGTTGTCATGTGACGTGAAGCTGGATCCTCGTCCGGAGTATCACCGCTGTATTTTGACATGGCACCATCAGGAACCTCTGCCATGGGCACAGAGCACAGGGAACCAGGTTAGCAGCAGACTCATGAGCATGCGCAGCGCTAACGGACTCCTGATGCTACCTCCCAAAACCGAGCAATACGTGGAGCTGCACAAGGGCGAGGTGGTGGACGTGATGGTCATCGGCCGCCTATGATGTCACGGCAGCGAGGCGGCGACGGGCGGAGGGCGACGGGCGGTTCACGGTGCATGTTCACATATCATTGACTGTAATATGCAACGGCACAGCtagtttttattgatttggATATAACGCTGAAGTATAGTCAACATCTCGATCACAAAACTAGATacatatgagaaaaaaaataaaaaaaataaaattatttcaaagaaagaaaaaatatacttttaaatgataaaagtcTAATTATAAAAAGAgatttattctgtattattattaattattattattgcatttttcttctcattattaattattattatgattattatattaaggCAACTTTGTTCTTTTCATTGCGGTTGCTTTGTGTGTTCGATGCTAGATCTTATAGCTGTAGCATTTTAATAGAAACTGTAGGTGCCTGccaggagagaaaaaaaaaatgaagaacatCGCTTCCCCGTTTTAACGCAAAAATAACCGAGCGCTTTTGTTTTGGGACGCGGGGGAAGGAGCTCTACGACTTGAAACCTGGACTCCGGAGGGTGGCACTTTTTGTCTTACGTGTCATTGACGTGACACTTTTACTTTTCCTCCCATTAGTACGCATCATTATGACATCACAAAGAGCTTTGCTTGTCGTTTATATCTCGTGAGTCTTGTTTGTGTGCGCAGTGCCAAACGCGTGGGTGCACAAAGGTCGTGCTGCGGGGGAACACGGGCCTGGTCACCCGATCCCTGAAGCTTCCTTATAATCACATGACCTGGTGTAGCCCCGCCCCCGTCCCCCAAGGGGGCGGAGTCACAGGCGAAaccttttatttgaatatacttttaacaaaaaaaaaaaaggatgaggaaaaaaaaaaaaaaggaaaccacAGCTTATTTAAGTGCTGACTGCCTTTTTAATCAActacacaaaaatgtacagtaaaagaaaaagaaaaaaaaaaaacgaacaattGAATTGTACAGATAAATGTGACCAGCACTCCTGCGGAATATGACCAAGCAATGAGGAGACATTGAACAAATCtgtataataacattttctgtaaCGATAAGAACCTAATGAGAgagaatacaataataaaatccttgatcattatataaaaatagcattgtggaattttcttgtaataaaataaataaaaacataattcctTAA
>XM_043220035.1
CCCTCCAGAGTTCGATGTGCTCGTCTCTCGGCTCTGCCTGGAGTTCTCAGTGCGGCGACAGCGGTGCTGAATATGGCGACAGACGGGATGATTTTAACAAACCACGACCACCAAATCCGGGTCGGCGTCTTGACAGTAAGCGACAGCTGCTTTCACAATCACACCGAGGACCGCAGCGGGATCAACCTCAAAGATCTCGTGCACGACCCTTCCTTGCTTGGAGGAACCATCTCAGCTTACAAAATCGTTCCCGATGAAATTGATGAGATCAAGGAGACTCTGATCGACTGGTGTGATGAGAAAGAGCTGAACCTGATTTTGACCACTGGTGGCACCGGCTTCGCTCCTCGGGATGTCACgcctgaggcCACTAAAGAGGTGATCGAGCGGGAAGCTCCAGGGATGTCTCTGGCCATGCTGGTGGGCTCTCTGAATGTCACTCCTCTGGGAATGCTCTCCAGACCCGTGTGTGGTATCCGAGGAAAAACTCTTATCATAAATTTGCCAGGCAGTAAAAAAGGTTCACAGGAATGCTTCCAGTTCATCCTGCCCGCTCTCCCGCACGCCATCGACCTGCTCCGAGAAGCTGTGGTCAAAGTGAAGGAGGTGCCGAACGAGCTGGAGGACCTGCCCTCGCCTCCGCCTCCTCCGTCCCCGCTGCCCACCAGCAGCCCGCACCGCCAGACCGAGGACAAGGGAGTGCAgtgtgaggaggaggaggaggagaagaaggacAGCGGTGTGGCCTCCACCGAGGACAGCTCCTCCTCGCACATCACCGCCGCCTCCATCGCTGCCAAGATTCCCGACTCCATCATCTCACGGGGCGTCCAGGTCCTTCCTCGTGACACGGCGTCCCTGAGCACCACGCCGTCCGAGTCGCCCAGAGCCCAGGCTACCTCCCGCCTCTCCACCGCTTCCTGTCCCACCCCCAAGGTGCAGTCACGATGCAGCAGCAAAGAAAACATCTTACGAGCAAgtCATAGTGCGGTGGACATCACCAAAGTGGCTCGGAGACACCGTATGTCTCCATTCCCTCTCACCTCTATGGATAAAGCCTTCATCACTGTGCTGGAGATGACCGCGGTTCTGGGCACTGAGATCATTAACTACAGGGACGGCATGGGTTATGTTCTGGCTCAGGACGTTTATGCCAAAGACAACCTGCCTCCGTTCCCCGCCTCTGTTAAGGACGGCTACGCCGTAAGAGCGGCCGACGGTCCTGGGGACAGATTTATCGTCGGCGAGTCTCAGGCTGGAGAGCAGccCACACACACCGTGATGCCGTGTCAGGTGATGCGGGTGACGACCGGCGCTCCTATCCCGTGCGGAGCCGACGCTGTGGTTCAAGTAGAAGACACCGAACTCCTGCGAGAGTCTGAAGACGGCACAGAAGAGCTTGAGGTGCGCATTCTGGTCCAGGCTCGTCCAGGTCAAGACATCAGGCCCATCGGTCACGACATCAAGCGCGGCGAATGCGTGCTGGCCAAAGGCACTCACATGGGCCCGTCTGAGATCGGTCTGCTGGCCACGGTGGGCGTCACGGAGGTGGAAGTGCAGAAGTTTCCGGTCGTGGCTGTGATGTCTACAGGCAACGAGCTGCTGAACCCGGAGGATGACCTGCACCCCGGTAAGATCAGAGACTCTAACCGCTCCACGCTGCTGGCCACCATACAGGAGCACGGGTACCCCACCATCAACCTGGGCATCGTGGGAGACAACCCTGACGACCTGCTGAATGCTCTGAACGAGGGAATCAGCCGCGCTGATGTCATCATCACCTCAGGGGGCGTGTCTATGGGAGAGAAGGATTACCTGAAACAGGTACTTGATATCGACCTTCATGCTCAGATACACTTTGGACGTGTCTTCATGAAACCAGGTCTCCCCACAACATTTGCCACTCTTGATATGGACGGGTCTCGAAAACTTATCTTTGCTCTGCCAGGTAATCCTGTGTCGGCGGTCGTAACGTGTAACCTCTTCGTCATTCCTGCCTTGAGGAAGATGCAGGGAATCTTAGACCCGCGGCCCACCATAATAAAAGCCAGGTTGTCATGTGACGTGAAGCTGGATCCTCGTCCGGAGTATCACCGCTGTATTTTGACATGGCACCATCAGGAACCTCTGCCATGGGCACAGAGCACAGGGAACCAGGTTAGCAGCAGACTCATGAGCATGCGCAGCGCTAACGGACTCCTGATGCTACCTCCCAAAACCGAGCAATACGTGGAGCTGCACAAGGGCGAGGTGGTGGACGTGATGGTCATCGGCCGCCTATGATGTCACGGCAGCGAGGCGGCGACGGGCGGAGGGCGACGGGCGGTTCACGGTGCATGTTCACATATCATTGACTGTAATATGCAACGGCACAGCtagtttttattgatttggATATAACGCTGAAGTATAGTCAACATCTCGATCACAAAACTAGATacatatgagaaaaaaaataaaaaaaataaaattatttcaaagaaagaaaaaatatacttttaaatgataaaagtcTAATTATAAAAAGAgatttattctgtattattattaattattattattgcatttttcttctcattattaattattattatgattattatattaaggCAACTTTGTTCTTTTCATTGCGGTTGCTTTGTGTGTTCGATGCTAGATCTTATAGCTGTAGCATTTTAATAGAAACTGTAGGTGCCTGccaggagagaaaaaaaaaatgaagaacatCGCTTCCCCGTTTTAACGCAAAAATAACCGAGCGCTTTTGTTTTGGGACGCGGGGGAAGGAGCTCTACGACTTGAAACCTGGACTCCGGAGGGTGGCACTTTTTGTCTTACGTGTCATTGACGTGACACTTTTACTTTTCCTCCCATTAGTACGCATCATTATGACATCACAAAGAGCTTTGCTTGTCGTTTATATCTCGTGAGTCTTGTTTGTGTGCGCAGTGCCAAACGCGTGGGTGCACAAAGGTCGTGCTGCGGGGGAACACGGGCCTGGTCACCCGATCCCTGAAGCTTCCTTATAATCACATGACCTGGTGTAGCCCCGCCCCCGTCCCCCAAGGGGGCGGAGTCACAGGCGAAaccttttatttgaatatacttttaacaaaaaaaaaaaaggatgaggaaaaaaaaaaaaaaggaaaccacAGCTTATTTAAGTGCTGACTGCCTTTTTAATCAActacacaaaaatgtacagtaaaagaaaaagaaaaaaaaaaaacgaacaattGAATTGTACAGATAAATGTGACCAGCACTCCTGCGGAATATGACCAAGCAATGAGGAGACATTGAACAAATCtgtataataacattttctgtaaCGATAAGAACCTAATGAGAgagaatacaataataaaatccttgatcattatataaaaatagcattgtggaattttcttgtaataaaataaataaaaacataattcctTAA

Function

symbol description
gphnb Predicted to enable molybdopterin molybdotransferase activity. Acts upstream of or within glycine receptor clustering. Predicted to be active in several cellular components, including dendrite; postsynaptic membrane; and postsynaptic specialization. Is expressed in head; rhombomere; spinal cord; and spinal cord interneuron. Human ortholog(s) of this gene implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C. Orthologous to human GPHN (gephyrin).
gphn Enables identical protein binding activity; molybdopterin cofactor binding activity; and nitrate reductase activity. Involved in gamma-aminobutyric acid receptor clustering; molybdopterin cofactor biosynthetic process; and response to metal ion. Located in dendrite and postsynaptic membrane. Implicated in inherited metabolic disorder and molybdenum cofactor deficiency type C.

NR:

description
gephyrin b

GO:

id name namespace
GO:0006777 Mo-molybdopterin cofactor biosynthetic process biological_process
GO:0072579 glycine receptor clustering biological_process

KEGG:

id description
K15376 GPHN; gephyrin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220033.1 True 3625 mRNA 0.51 25 24380011 24453951
XM_043220035.1 False 3445 mRNA 0.50 22 24380011 24453951

Neighbor

gene id symbol gene type direction distance location
fut8b fut8b,fut8a,fut8,LOC107730784,LOC107726710,LOC107559123,LOC107669464 coding upstream 31136 24121857 ~ 24348875 (+)
LOC122324313 hsp90ab1,LOC107704054,LOC107669433,LOC107559118,LOC107568216 coding upstream 111676 24262489 ~ 24268335 (+)
slc24a4b slc24a4b,slc24a4,LOC107719386,LOC107559124,LOC107669463,LOC107704063,LOC107548412 coding upstream 375963 23971080 ~ 24004048 (+)
hsf2 LOC107727660,LOC107602187,LOC107675230,LOC107716856,LOC107598084,LOC107675083 coding upstream 434057 23940664 ~ 23945954 (+)
gja1b LOC107675226,LOC107602186,LOC107716890,LOC107598086,LOC107697125 coding upstream 532508 23844087 ~ 23847503 (+)
LOC122324917 LOC107732493,LOC107704058 coding downstream 15727 24469678 ~ 24477818 (+)
eif2s1b eif2s1b,eif2s1,LOC107704056,LOC107732494,LOC107559120 coding downstream 31792 24485743 ~ 24491374 (+)
hsp90ab1 hsp90ab1,LOC107704054,LOC107669433,LOC107559118 coding downstream 57948 24511899 ~ 24517732 (+)
tmem151ba tmem151ba,LOC107704033,LOC107732502,LOC107568228,LOC107726705,LOC107559094 coding downstream 93136 24547087 ~ 24557704 (+)
thbd NA coding downstream 155067 24609018 ~ 24610945 (+)
G141466 NA non-coding upstream 293374 24004687 ~ 24086637 (+)
LOC122324430 NA non-coding upstream 347354 24022134 ~ 24032657 (+)
G141465 serinc1,LOC104938560,LOC102778905 non-coding upstream 372551 23949261 ~ 24007460 (+)
G141469 NA non-coding upstream 413422 23954894 ~ 23966589 (+)
G141464 NA non-coding upstream 431184 23947616 ~ 23948827 (+)
G141534 NA non-coding downstream 46140 24500091 ~ 24504465 (+)
G141535 NA non-coding downstream 64135 24518086 ~ 24518367 (+)
G141536 NA non-coding downstream 65222 24519173 ~ 24519491 (+)
G141538 NA non-coding downstream 68022 24521973 ~ 24522222 (+)
G141539 NA non-coding downstream 68555 24522506 ~ 24523847 (+)
G141475 NA other upstream 305588 24072871 ~ 24074423 (+)
pln NA other upstream 1028356 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 1519684 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 1625850 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 1862328 22506727 ~ 22517683 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 3039 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 514929 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 710030 25163981 ~ 25168421 (+)
G141775 NA other downstream 768016 25221967 ~ 25223109 (+)
fig4a fig4,fig4b,LOC107667833 other downstream 796947 25250898 ~ 25311427 (+)

Expression


Co-expression Network