gnpat2 (si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372)


Basic Information

Item Value
gene id gnpat2
gene name si:ch73-21k16.5,LOC107593264,LOC107697202,LOC107719367,LOC107550407,LOC107685372
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21630270 ~ 21639546 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220050.1
GCGCGCTTGGGTCCGAGGTTTGACCAGTTCTCTGGACTCTGACGTCACATCAGAAGAGGAGAGGAACACCTGCTGCTCTCGTATGGGACATGGAGCCACTGAGTTTGGACGGTGCAGAAGCTGATGGCTTCTTTGACATCCTGGAGGAGAGGAGGCGGAGCAGTGACTTAAGCCACGCCTTCCGGACCTTTAACCCGCAGCCGTACCGTGGGGCCACGCCCATTTCAGCAGCCGCTCTCAACAGGATGGTGCTTGAATCGCAATACCTGACCTACATCGTACAAGAGATTATGGTTGAATGTGACGAACCACGGGAGGCGCTTTTAGAGGAGGCGTCTTCGCTGCTGGACGAGATGAGTCAAAACCTTCAGCTGGGATTCATTCGTCTGCTGGGCTTCGCACTGAGCAAAGTTTTCAAGAGCGTTTTCAGCTCCATACGCGTCAACGAGGATGGACTCACCCGGCTCCAGCAAGCCATTCAGGAGTATCCCGTCATCCTGATGCCCAACCACAGGAGTTATGTGGACTTCCTTGTTCTGTCTTACATCATGTTCACTTATGACCTCTCTATCCCCGTCATTGCAGCTGGAATTCCTCTGATGGGGATGAAGCTGATTGGTGAGATCTTTCGGCGATCAGGAGCGTTTTTTATCCGTCGTGCCATTGGCTCAGACAAGCTGTACTGGGCAGTGCTGTCTGAGTACGTCAGAACCATTGTGCGGACAGGTTATGCTCCGTTGGAGTTTTACGTTGAAGGATTACGCAGCAGAACGCTGAAATCTCTCACACCAAAACTAGGAATGATGCACATGGTGTTGGAGCCCTTTTTTAAAGGAGAGGTGTTTGACATCAGTCTGGTGCCCATCAGCATCAGCTACGAGCGTGTGCTTGAGGAGTCGCTCCTCGCTCATGAGCTGCTGGGAGTGCCTAAACCCAAAGAGACCACAGGGGCTTTGCTGAAGGCCAGGACTGTGCTGAAGGAGGACTACGGCTGCATGCATGTGTGCTTTGGCAACCCTGTGTCAGTCAGAGAGCTGATGAAGGGAAAAATTAACCGCAAACAATATAATCTGGTACCCAGaGACCTGCCTATGAAGCCCAGTAAAGAGACGCAGGAGTTTGTGTCTGGTCTCGCCCACATGATGATCCGTTTGCAGGAGAGAAATGCGGTACTGAGTGCCTGGAACCTGATGGCTGTGGTTCTCCTTCAGAACCTTCAGGGCATTGATTTAGACCTGCTGACCCACAAAACCCTGTGGCTGAAGAAACTCGCCCTGCGGTTCGGAGCTCATCTCAGATGGCCCAAGAATGATTTGGATTCTGAGGTAATGTCATCTAGCATGAGCCTGCATCATTCAGTGGCACGCTGTGAGGGGCGTGTCTATTTGGTGGAGGAGGTGGGGCCAGGGCCTGTCACTCAAGAGGAGGACGTGTTCCGAAAGGCTGCATCTGTGCTCATGTGTGCCTCCTACAGGAATCAAGCAGTGCACGTATTCACTAGACCAGCTATGGTGGCAGTCGCTATGACAACAGATGCAAGAAATAAAACAGACAAtgtctttcattattttaagtTCCTGCTGGAGCTCTTTTCCAATGAGTTTGTTCTCATTCCTGGTCAAGCAGTTCAGgaCTTTGAGGAGGGCTGTTCTTTGCTACAGCAGTCTGGTGTAATCGGCCGCTCTGATGAAGAGATCTGTGTGAGGGACAATGAAACCATCATCTTCCTCAGAGCGATTCTGCAGTCTTTCATCGAAAGCTACCAGGTGGTGTTCAGGTACCTGTGTGAAGAGAGCTCCCAGACATTCAGGGAGAAGATGTTTTCAAACAGCATCCGCAGCTTCATCGTCAAACTCTTTATTTCAGGCGAAGTCGAGTCGCACGAGTGTTTATCGTCCGACCTCCAGAAGAACGTTCTCTCAGCTTTGCTCCGGATGGCTGCTGTGACCAAAACTAAAGTtgatgACCAGAATGAGTTTACGGTGAATAAATCTGCGGTGAAGAAAATATGGCACATGCTGAGCAACGGACGGACCTCTGAGATCAGTGTAAACGCCAGACTGTGACGAGAAGAATCAGACGACAACGACTCTCAATTCCTTTATTGATAATGTTAATATGTATaagtactgtatgtgtttttagtGTCAAACACAGAACAAACCTGCAGTAGTTGCTCTAGATGTAGGACGTAATTTGCAACCGTTATTGCAAGTAGGctatatatgatttaattttatagaTCATGTAAGAATCATACAGATATTAATCAAGATACGAAGATGTGCTCGTCTTTTGAGTATTGatgtaaaaattaatgtttaatgtgtcGTTTAACAGGTGTTTCAACTGTTTTATGAAATCGTTttctaatttttcaaaacatacaaTGATATACTGTAATAAACTATTGATTACTGCTGTATATAAAGAAACATGAAATAATAGTATTACAAGACGAGAACAGAAAGCCATCAgccataaatattataaatatgctaAGAAGTTAAGTGTGTCTTAACAAAAGAGAGATGCTTATAGTTCTggtccttgattctgattggttgaggcAACTTCAAAGCtatctacaaacacacaccttaGTTTTCAATTGTCTACGTAGTTTAGagcaaaaatttgtttttattaatataattacacattattattatttttttgtaagatcttgctgcatatataaaatagccatcttaataaagcaataagcccCGAAGCGGTggtttacagtaaattaataaCAGCTACAGTTACTACTACTTCTTGGggcttatttctttatttaccaCCACATTAAAAACGAACCAGCAGAGCACTTTTTGTGTACTTGTCTTAAAGTGGAGTTTCAGAAAGCGTGTGGCCTAATTCACAAGCAAGCAGCTGGTTAGCAAAACCGtccacttttctttttccagttaTTTGACCGGTCCAGATTGTTTTAAAAGGATTGATTCTGATCTTCTCAAGTTCAACTCGTTTGTGCGCGAGTCGTGCAAAGCTCTTATGGCTTTGTTTCCTTTCAGAAATCGTCGATATCAatgcataaatgctgtttt

Function

NR:

description
PREDICTED: dihydroxyacetone phosphate acyltransferase

GO: NA

KEGG:

id description
K00649 GNPAT; glyceronephosphate O-acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220050.1 True 3074 mRNA 0.45 17 21630270 21639546

Neighbor

gene id symbol gene type direction distance location
rab10 rab10,LOC107593269,LOC107697207,LOC102798439 coding downstream 99824 21516779 ~ 21530446 (-)
hadhaa hadhaa,hadha,LOC107593272,LOC107721447,LOC107691000,LOC107697212 coding downstream 314943 21305710 ~ 21315327 (-)
prdm1c NA coding downstream 356032 21265415 ~ 21274238 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding downstream 365303 21259533 ~ 21264967 (-)
tram2 tram2,LOC107593275,LOC107721446 coding downstream 373664 21250748 ~ 21256606 (-)
lpin1b si:ch73-21k16.1,LOC107708326,LOC107593263,LOC107685350 coding upstream 783 21640329 ~ 21655564 (-)
fez2b si:ch211-57i17.1,LOC107708323,LOC107685354,LOC107719364,LOC107550411 coding upstream 50872 21690418 ~ 21697694 (-)
wdr26b wdr26b,LOC107697199,LOC107708322,LOC107685355 coding upstream 59860 21699406 ~ 21713062 (-)
LOC122324966 LOC107685373,LOC107593287,LOC107708319 coding upstream 73938 21713484 ~ 21730228 (-)
jdp2b LOC107685359,LOC107742717,LOC107593286,LOC107719362,LOC107697198,LOC107550414 coding upstream 111330 21750876 ~ 21755193 (-)
G140826 NA non-coding downstream 61910 21567633 ~ 21568360 (-)
G140817 NA non-coding downstream 78039 21549084 ~ 21552231 (-)
G140808 NA non-coding downstream 146970 21482618 ~ 21483300 (-)
LOC122324488 NA non-coding downstream 152412 21437692 ~ 21477858 (-)
G140688 NA non-coding downstream 194212 21435797 ~ 21436058 (-)
G140807 NA non-coding upstream 58874 21698420 ~ 21699275 (-)
G140859 LOC107593260 non-coding upstream 88107 21727653 ~ 21768597 (-)
G140801 NA non-coding upstream 131484 21771030 ~ 21774369 (-)
G140882 NA non-coding upstream 200969 21840515 ~ 21840765 (-)
G140884 NA non-coding upstream 202216 21841762 ~ 21842034 (-)
LOC122324936 NA other downstream 117787 21507244 ~ 21512483 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other downstream 124615 21483592 ~ 21505655 (-)
G140616 NA other downstream 351529 21198710 ~ 21278741 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other downstream 539262 21089404 ~ 21091008 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 654515 20968188 ~ 20975755 (-)
batf batf,LOC107697118 other upstream 92998 21732544 ~ 21741077 (-)
G140883 NA other upstream 201567 21841113 ~ 21841468 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other upstream 202886 21842432 ~ 21844633 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other upstream 205668 21845214 ~ 21846917 (-)
G140972 NA other upstream 473056 22112602 ~ 22113044 (-)

Expression


Co-expression Network