pdgfra (pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286)


Basic Information

Item Value
gene id pdgfra
gene name pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11339863 ~ 11360039 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220053.1
ATTCATTTTGGCTGTTCTTTTATCAAAGGAACAACCAAAAGGGATTAAAAAGCTGAGCACGATCCGAGTGACCATGGGGTTCCTGGAGACACATCTCGTTTTGGGGATTGTCTTATTAGGGGTATTTTCAGATGTTTCGAAACCTTGGCCGGTTATTCATTCGGATGAAAAGGAATTTATTCTCCTACCTCATTCTGAGTTCACCATCACTTGCTCCGGAGAGAGGAAAGTGATATGGCATGAGCCTTTGCCCCCCAACAGTGAAGTGCAGTCCGGATTCAATCACAGTACTTTGATAATCACTGATGCAGAGGCCTCTAACACAGGATACTACACCTGTTTGTATGATGGTCAACCTGAAAAAGAGACCGAAATCTACATTTATGTTCAAGATCCCGAGGTTCCATTCGTGTCGGATCCTTCCGTTGAGACGGATGAAATAGGCACAACTATCCCCTGCCGTGCTACAAACTCCAATTATCAAGTGATTCTCAGAAACCTGCAGAGTGGGGATGAAGTCTCTGCGCTTTACGACCACAAAATTGGCTTTTTTGCAGTCTTTTTTGCACCGGGTCGCTATGTCTGCGAGACGAACGTGAATGGCAAAGCGGTGCAGAGCATCGTTTATAACGTGACAAACGACGAGGatgccaaagatgatgacgatgatgattatgaagaagaagaaaagagctTCAACATAAATCTGAGTGCCAGCATGGAGGACGTGAAAGAGGGGGATGCTGTCAATCTGACCTGCGAGACGCCTCATGGGAAAGCTTTCCACCAGCAGTGGCTGCATCCCCAAGTGCAGGCCAGAGATGCTGTTCCAATGAAGTTAACATTCCCAGACAAGGTTCAGTACATCCTCAGCATCCCGAAAGCCTCTGTGGCAGACACTGGACGTTATGAGTGTGCTGTTACCAACCAAATCACTGGAAAAACCAAGTCCCTCATCCTGGGAATCACGGTCCACGAAAGCTCTTTTGTGGAAGTAATATCTAATGGGATCGGGCCAGTGGAGATCGTGTCGCTTCTGGAGGAAAAAGAGTTCACTATTTACATTGATGCTAACCCTGAGCCAAAAGTCAGGTGGTTTAAAGATGAACTCGAGCTGGATGACAGCTACATCTCCACCAAGACCACTCATCTGGAAGGCCTCAGGTATGAGAATATTCTGGTTCTCCGTCACCCCATAGAGGAGGACAGTGGCATCTATGAGATTGTTGCATCCACTGGTTCCAGGACCTCAAGATTTTCATTCAAACTGCTAGTTGAAGCCATGTACCCAGAGCTGCCACAGTCGGTGCTGGCTCCAGTCATGTGGCCCCAGAGGGACAGCATGGAGGTGTCTCTCCACTCCACTTTCCGACTCACGTGTCGAGGTCAGGCTGAGCTCACCTGGTACAGTCCTGTTTATCTCCACGATCAGATcgacactgaaaaaaaaggacTCTTCATCTCCACTGTGACTGTGAGCAATGCGACGGCCGCCCATACAGGAAAATACATCTGCTTCTATGACTCCAGCAACAACACTGAGGAGACCTCCATCTATATTTATGTGCCAGATCCAGAAACGCCGTTTGTGCCGTCCATGATGCCTTTTGAAAACCATGTACTGACGAGTCATGATGAAATGGAGATACCCTGCCGCGTGACGGACCCCAGCGTCAGCGTCTCTTTGATTCACGTCGAGACCAATCAGGTTCTGCCCAGTGTCTATGACAGCAAGAGAGGATTCATTGGCCTATTCAGTGCTGGGACATATGTCTGCAGGACCATCATTAACGGACAGACACATAACAGCATAGATTACATCGTTCATGGCTGGACAGGAGGGTCTGATGTGCAAGTCGAGCTGCAAGCAGAGAAGAAAGCTCTGCTGGTGGGTGAGACCATCACTGTTGACTGTGTAGCCAGAAACAGTGAGATACTGGAGGACCACTGGAAATACCCCGGGAAGCTGGCGGGTCGAGGAATAAAGACCGTAAAGGAGAATAAGCGAGATCTTGAGATCCATTACACTCTGACAGTGGCTAATGCCTCACCGAAAGACAGCGGCGTCTACGCTTGCTCCATCACCGATGTTAAGAGCAACGAGAGCCAAACCAAACAGCTCACTATTACAGTCTATGATCATGAGTTCGTGCACATAAGTCCGGCGATCGGTCCAGTGGAGACCACAAGGCTGGACGAGGTGCGAGAGTTCAGGGTGGACATACAGTCTTTCCCCGCTCCCAAAGTCACATGGTTAAAGGACGGATCGGTCCTGGGAGATGTTGCAGCAGAAATCACCACCAGCCTCCTAAAAATCGATGAGACCAGttACCAGGGTGTGCTGACCCTGATCAGGGCTAAAGCAGAGGACAGTGGGAACTATACCATCAGGGCAGAAACAGGCAGCCAGACTGCCAGCAACAGTTTCTACCTCCAGGTTAAAGTTCCCCCTGTGATTGTGGACCTGATGGATATCCACCACGGCTCTGCTGCAGGTCAGGAAGTGGTGTGTATTACTGGCGGCTCCCCTGCCCCTGATGTCGACTGGTATAtctgcaaaaacattaaacaATGTGCCAACGATTCCTCCCAGTGGATGCCGCTTCCGATCAACTCTACGGACATCAAAGTGGAAGTGCAAATGGATGTGGACAACAACATTGAGAGTCACATCATCTTCCACCATCTTGAGAGCACAATTGCTGTGCGCTGTCTGGCCAGGAATGACATGGGCGCTGTTTCACGAGAGGTCAAACTCGTGTCGAATGGTCCTCACTCGGAGCTCACTGTGGCTGCTGCTGTTCTGGTGCTGCTGGTCATTGTCATCATCTCACTCATTGTGCTGGTCATTATCTGGAAACAGAAACCACGTTATGAGATCAGATGGCGTGTGATTGAATCTGTCAGTCCGGATGGTCACGAGTACATCTATGTTGACCCCATGCAGCTTCCATATGACTCCCGCTGGGAGTTCCCTCGGGATTCACTTGTACTGGgtCGTGTCCTAGGCTCAGGAGCATTTGGGAAAGTAGTGGAAGGCACTGCTTATGGACTCAGTCGTTCTCAACCCGTGATGAAAGTGGCAGTGAAAATGCTTAAACCAACAGCACGCTCCAGCGAGAAACAGGCTTTGATGTCAGAGCTGAAAATTATGACCCACCTGGGCCCTCACCTAAACATTGTCAACCTTCTGGGAGCATGCACCAAATCAGGACCAATCTACATTATCACAGAGTACTGTTTCTATGGCGACCTAGTGAATTACCTGCATAAGAACAGAGATGGGTTTCTCAGCCGCCACACAGAAAAGGGCAAGAAAGAGCTAGACATCTTTGGCATCAACCCAGCTGATGAGAGTAGCAGGAGCTACGTCATCCTGTCTTTTGAGGGGAAAGGTGACTACATGGACATGAAGCAGGCAGACACCATGCAGTACGTCCCCATGTTGGAAATGAATGAAGCCTCAAAATACTCCCCCATCCAGAGATCAGACTATGACCATCCTCCATCTCACAGACAGCTCAATGAGAGTGAAGTTGAGAACCTTCTCTCAGATGACACCAGTGAAGGCCTGACGACAGTGGACCTCCTCAGTTTCACCTATCAGGTGGCTCGAGGGATGGAGTTCTTGGCCTCTAAGAACTGTGTACACAGAGACTTGGCTGCACGTAATGTCCTGCTGTCTCAAGGCAAGATAGTGAAGATCTGTGACTTTGGACTGGCCAGAGACATCATGCACGATAACAACTACGTCTCCAAAGGAAGTactttCCTTCCAGTGAAATGGATGGCCCCTGAGAGCATCTTTGATAACCTGTACACTACACTCAGTGATGTCTGGTCCTATGGCATCTTATTATGGGAGATCTTCTCTCTTGGAGGGACTCCTTATCCAGGTATGATTGTGGATTCCAGCTTCTACAACAAGATCAAGAGTGGATACCGAATGGCAAAACCCGAGCACGCTTCCAGTGATGTCTATGAGCTTATGATGAagtgttggaacagtgaaccaGAAAAGAGACCATCTTTCCACAGCCTGAGTGATACGGTGGCCTCTCTGCTGCCTTCAGGATATAAGAGGTGCTACGAACGCGTGAATCATGACTTCCTGAAGAGCGATCACCCCGCTGTGACTCGGGTGCAGTGCGTTGACAATGATGATGCATACATGGGTGTGCTCTACAAGAACCAGGGCAAGCTGAAGGACCGCGAGAGTGGCTTTGATGAACAAAGGCTGAGCTCTGACAGTGGTTACATCATTCCTCTGCCGGACCTCGACCCGCTGTCAAATGAAGACTACAGCAAGAGGAACCGCCACAGCTCTCAGACGTCAGAAGAAAGCGCAATAGAGACAGGCTCTAGCAGCTCCATGACGAAGCGCGAGGGAGAGACGCTAGAGGACATCACCTTGCTGGACGAGATGTGCTTGGACTCAGGAGACCTGGTGGAGGACAGTTTCCTGTgagcagagaaaagagagagagaaacattcTTCTGATTCATTTCAAGTTCACAGAGCTCTCTCGGCGTCCTTCTGCCACATTTTCCTCACCTCACTTTATCGGAGCCTTCAGAAAAAAGCAAAACCTTTAATGCGTGAATGTCATCGA

Function

symbol description
pdgfra Predicted to enable platelet-derived growth factor alpha-receptor activity and platelet-derived growth factor binding activity. Acts upstream of or within several processes, including circulatory system development; embryonic neurocranium morphogenesis; and neural crest cell migration. Predicted to be located in Golgi apparatus and cilium. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; choroidal fissure; head; mesoderm; and neural crest. Human ortholog(s) of this gene implicated in hematologic cancer (multiple); hypereosinophilic syndrome; and pancreatic cancer. Orthologous to human PDGFRA (platelet derived growth factor receptor alpha).

NR:

description
platelet-derived growth factor receptor alpha-like

GO: NA

KEGG:

id description
K04363 PDGFRA, CD140A; platelet-derived growth factor receptor alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220053.1 True 4613 mRNA 0.49 29 11339863 11360039

Neighbor

gene id symbol gene type direction distance location
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding downstream 19944 11301144 ~ 11319919 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 272457 11061914 ~ 11067406 (-)
trnal-cag_34 NA coding downstream 407219 10932562 ~ 10932644 (-)
eif2b4 eif2b4,LOC107723173,LOC107589057,LOC107697314,LOC107701499,LOC107561932 coding downstream 407548 10925463 ~ 10932315 (-)
snx17 snx17,LOC107723180,LOC107701503,LOC107746210 coding downstream 416981 10895988 ~ 10922882 (-)
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding upstream 124098 11484137 ~ 11506327 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding upstream 244591 11604630 ~ 11607753 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding upstream 309101 11669140 ~ 11676651 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 332743 11692782 ~ 11704023 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding upstream 352903 11712942 ~ 11716297 (-)
G137644 NA non-coding downstream 112498 11215226 ~ 11227365 (-)
G137621 LOC107739294,LOC107553647 non-coding downstream 145016 11191659 ~ 11194847 (-)
LOC122325111 NA non-coding downstream 224938 11113796 ~ 11114925 (-)
LOC122325152 NA non-coding downstream 402489 10934946 ~ 10937374 (-)
G137588 NA non-coding downstream 533083 10806521 ~ 10806780 (-)
G137751 NA non-coding upstream 251984 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 263554 11623593 ~ 11631094 (-)
G137748 NA non-coding upstream 268585 11628624 ~ 11631015 (-)
LOC122325628 NA non-coding upstream 269089 11629128 ~ 11629249 (-)
LOC122325626 NA non-coding upstream 269681 11629720 ~ 11629841 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 157680 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 203251 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 615794 10721921 ~ 10724069 (-)
G137451 NA other downstream 769126 10567297 ~ 10570737 (-)
G137330 NA other downstream 1400986 9937965 ~ 9938877 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other upstream 6884 11366923 ~ 11368490 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 322366 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 858724 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 862771 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 881762 12241801 ~ 12280312 (-)

Expression


Co-expression Network