CI01000001_10573770_10582123 (LMBR1L)


Basic Information

Item Value
gene id CI01000001_10573770_10582123
gene name LMBR1L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10573770 ~ 10582238 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10573770_10582123.mRNA
ATGAACCTGGGTTCCTGTGAGCACAGCTGCTCCGGTCTATATGACATTGAGGATGCCACTGTCAACAAAATTGCGCTGTGGCTGTGTACATTCACTCTCTCAGTGGCCGTGTGTGCAGTGCTGCTCCTGCCCATCTCCATCCTGTCCAATGAAGTTCTGCTCACATTCCCACACAGCTACTACATGCAGTGGCTCAATGGCTCGCTCATCCGCGGCTTGTGGAACCTAGTCTTCTTATTCTCAAACCTCTCTCTGGTCTTCCTAATGCCGTTCGCCTACTTTTTTACTGAATCAGAAGGATTTGCTGGGTCCAAAAAGGGCGTTATGGCGCGGGTGTATGAGACGGCAGTGATGCTGCTCCTCCTCAGTCTGTTGGTGCTGGGCATCGTGTGGGTGGCATCAGCTCTTCTCCATCACAACACCGCCCGTGAGAGTCTTTATGACCTCTGGGAATATTACCTGCCCTATCTCTATTCTGGAATCTCACTCTTTGGCGTTCTGCTGCTTTTGTGTAACAACACCTGTTGGATCAGTGCAAACATACAGGCCATCAACAAGGAGTTTCTGAGTGTGAAGTCCAAACGCATTGCTTTAGAGTTGCGGAAGAGAGTATCTCCATGGCAGCGCAACCTGGGATACCCAGTGGCCATGCTGATGCTTTTAGCTTTGACTGCGGTGTGTGTGCTGATGGTCTGTTTCCACGTGCTGGAACTGCTCTTCGATGAATCTGCCATGCCTAGAGGGATGGAGGACCCAAACTTGGGGCTTGCCTCGTTCTCAATGTTCGGCTCTCTGGGAGCTGCGGTGCAGGTGGTCATCATCCTGTATCTCATGGTCTCCTCGGTCGTCGGCTTCTACAGCTCTCCGCTCTTCACCGGTTTGCTGCCACGTGCACAGGACACCACCCTCACGCAGATTATAGGGAACTGTGTTTCTCTTTTAATACTCAGTTCAGCCCTGCCTGTTTTCTCTCGCACATTGGGAATTACAAGGTTTGATCTGCTTGGAGACTTTGGACGGTATAACTGGCTCGGAAGTTTCCATATTGTTTTCCTGTACAATATGCTTTTTGCTGGACTCACATCCGCCTGCCTCATCAACACAGTCACATGGGCCTTGCAAAGAGAACTTATCCGTGCCCTTGGACTCCACAGACTGCCTCTGACCGTGTCTCGTTCAACCATCCCCCTCAAACTCCTCCTGGCCAATGGGCTCTCAAAGATTCACTGAAGAGCGATCAGCTTTTTCATATATTATTGGCTATTGAAGCCCATTACCTTCTGGAGATGGTTCTGGATCCCATTCTGTGGCTTTCTCCTATTGGACCAAAGCTATTTTGTATCCA

Function

symbol description
lmbr1l Predicted to enable transmembrane signaling receptor activity. Predicted to be involved in negative regulation of canonical Wnt signaling pathway; receptor-mediated endocytosis; and signal transduction. Predicted to act upstream of or within Wnt signaling pathway and endocytosis. Predicted to be located in endoplasmic reticulum membrane and plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including cardiovascular system; margin; mesoderm; presumptive diencephalon; and retina. Orthologous to human LMBR1L (limb development membrane protein 1 like).

NR:

description
unknown

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10573770_10582123.mRNA True 1345 mRNA 0.50 13 10573770 10582238

Neighbor

gene id symbol gene type direction distance location
CI01000001_10538498_10539667 RPS26 coding upstream 34068 10538388 ~ 10539846 (+)
CI01000001_10525795_10530510 WNT1 coding upstream 43227 10523262 ~ 10530543 (+)
CI01000001_10420931_10426716 NA coding upstream 146623 10420318 ~ 10427147 (+)
CI01000001_10395420_10396473 NA coding upstream 177297 10394851 ~ 10396705 (+)
CI01000001_10328133_10329110 NA coding upstream 244660 10328040 ~ 10329110 (+)
CI01000001_10582439_10582802 NA coding downstream 140 10582378 ~ 10582821 (+)
CI01000001_10590766_10595793 DHH coding downstream 8198 10590436 ~ 10596238 (+)
CI01000001_10604980_10633286 KMT2D coding downstream 21650 10603888 ~ 10633540 (+)
CI01000001_10688354_10691353 NA coding downstream 105624 10687862 ~ 10691409 (+)
CI01000001_10694664_10713151 NA coding downstream 112229 10694467 ~ 10714684 (+)
G19030 NA non-coding upstream 19801 10553689 ~ 10553969 (+)
G19029 NA non-coding upstream 20109 10553344 ~ 10553661 (+)
G19026 NA non-coding upstream 35754 10537802 ~ 10538016 (+)
G19011 NA non-coding upstream 72955 10498633 ~ 10500815 (+)
G18933 NA non-coding upstream 86209 10485148 ~ 10487561 (+)
G19009 NA non-coding downstream 3718 10585956 ~ 10586294 (+)
G19008 NA non-coding downstream 16366 10598604 ~ 10598814 (+)
G18997 NA non-coding downstream 16788 10599026 ~ 10599251 (+)
G19041 NA non-coding downstream 72331 10654569 ~ 10654922 (+)
G18998 NA non-coding downstream 73149 10655387 ~ 10657271 (+)
G18937 NA other upstream 97381 10474984 ~ 10476389 (+)
G18872 NA other upstream 292401 10271146 ~ 10281369 (+)
G18873 NA other upstream 313056 10223879 ~ 10260714 (+)
G19039 NA other downstream 268686 10850924 ~ 10853983 (+)
G19314 NA other downstream 918956 11501194 ~ 11558673 (+)
G19395 NA other downstream 1099084 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2931166 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location