taar1b (LOC107733378,LOC107697104,LOC107550379)


Basic Information

Item Value
gene id taar1b
gene name LOC107733378,LOC107697104,LOC107550379
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21920295 ~ 21922335 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220062.1
TCTAAAACCATTTTCCACAAAGCTATTTGTTTTCATGCGTTTCTGCATTAGCTTCTTCATCGGATTGAGGTGAATGGAACACTAAAATGGATCTCTGTTACGAGGCTTTGAATGGATCCTGTGGGAAGTATGTACGACCGTATGGTGTCTATGTTTCTATGCTCATTGTTATGATGTTGACCTCCATTGTCACCGTCATTGGGAATGTACTGGTCATCATCTGCATTGGACATTTCAAGCAACTCCACACATCAACAAACCAGCTGATTTTATCTCTCGCCCTGTGTGACTTTCTCCTTGGGCTGTTTGTCATGCCGTTGAGCGCCGTCCGTTCCATGCAGGGCTGTTGGTACTTTGGTGATTTCTTATGTAAGTTACACACATGTACAGACATGACTCTCAGCACTGCTTCGATTTTCCACCTTGTGAGTGTGTCGGCTGAGCGATGTTGCGCCGTGTGCAGCCCATTAACATATCATTATCGTTTTGGTTTTCCAATGGTGCTGTTAATGATCTCCATCAGCTGGTTGATTCCTGCCATATTCGCTTACGCGACTACCTACTTCGAACTCAACCTTTACGGCGACAGGGACTTCTACAAAACCCACATAAGCTGTGTGGGAGGGTGCCATGTCTTTTTCAGTCACGTACCGGCGGTGATCTCTTCACTTGTTTCCTTCTACATTCCTAGCCTCATCATTATCGGCATTTATTCTAGAATTTACATGGTTGCCCGAAACCAAATGAGATCTATTAGTCTTCAACTGAACCAGCTGAGAAGAGCTTATCCATCGGAAGGCATGCACTGTCAGGGACGGAAAGCTACGATAACAGTTGCTATAGTGGTTGGAGTTTTCCTTGTTTGCTGGACTCCTTTTTTCCTCTGTAATGTTATGAATCCCTTTATTGGCTACACAACACCCCCAATGCTGATTGATGCTCTTGTTTGGTTTGGTTATGTCAATTCCACCTTAAATccgttcatttattcattcaggcATTCTTGGTTCCGAAATGCTGTGAGGGTTATAGTAACTGGGGAAATATTTCAGAACAATAGCAGCAGAAAACAGTTGTAAAAACACTTGTAACTAAGGCCTAATTTGGAAAAACACAGCATAGACAAATTGCTTTGAAAAACAATTAAGCTACTGGTCAAAAGTGTGCAAATGCAACCAAAACTCAGCTCAAAGTTGCATTAAATGTGAAGTTCCTGTATGTGTTCTTGTATTAATTTGGAGCCTGCCTTCCTGCCATAAAAATATCCTTCAGCTCTCTGATGTTGTTATGTGACGCTTCAGAAAATTATAATGTGTATGTTTCAATGCTTTTATGGTGTAGATAGTTAGGCTTGTTTGTGAACAGTTTATGCAATAAAACAGCATCATAGCTATGTGCACCAACATGATAATGCTAATAACTGacttaataatacatttataatgatgaTTTTTAAGAATGCATATTTACTCTAATTTTTTTGTATGACTTAAAACATGCAGTTACTTTTTTTCGTactgtttatgttgtttttgaagTTCTTGTGCATCTGATGTACATAACTATTTTTTGCCTCTGTTACTTCTTTCTACATTCTACTATTCTATTTAATATGTTGTTTGGATTAATGCATGGATGTGTGCTCTTCATCTTATGTCTGTCATTTCATATAGACCAAAGTCTGTGATAAATGGGTGATTATGGGTTGATGGGTCATTAGTGCTGTAGAGTCTGTTGTTGTGTTCATCCTAATGAGTGACAGTGTTAACGATGGGACTTCACACATTTGGATTTTGAGGCATGTTTGAgagtcattaaaatgaattggtTGTAACAAGTCTCAtgggaaaaacagaaaaacattacatcactacagaagagtgtttgtgtgaatggggcctatgcatgtgtttttatgtgacaaaattaatatgcattttaatgtacctttaattgttatataactaaaatgtaatatgttatcTTAGAAAATGTCTGTGTTAAACAAGTATACTTTAAGAGACATATGCATTATTGGTTC

Function

NR:

description
PREDICTED: trace amine-associated receptor 1-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG:

id description
K05051 TAAR; trace amine associated receptor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220062.1 True 2041 mRNA 0.38 1 21920295 21922335

Neighbor

gene id symbol gene type direction distance location
LOC122325154 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 4642 21914643 ~ 21915653 (+)
LOC122325217 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 8884 21910401 ~ 21911411 (+)
LOC122325159 taar10b,taar10c,taar10d,taar10a,LOC107719439,LOC107550391,LOC107697107,LOC107697105,LOC107550394 coding upstream 19467 21899772 ~ 21900828 (+)
taar10a taar10a,taar10b,taar10d,taar10c,LOC107719440,LOC107697108,LOC107550390,LOC107719439,LOC107697105,LOC107697107 coding upstream 22334 21896951 ~ 21897961 (+)
taar10 LOC107697082,LOC107550377,LOC107719389 coding upstream 29101 21890151 ~ 21891194 (+)
LOC122325331 taar12i,taar12j,LOC107733377,LOC107550395,LOC107756662,LOC107756663,LOC107550380,LOC107697080,LOC107550381 coding downstream 1821 21924156 ~ 21925178 (+)
LOC122325361 taar12c,LOC107697103,LOC107706946,LOC107550397,LOC107550396 coding downstream 4361 21926696 ~ 21927715 (+)
LOC122325420 LOC107550396,LOC107721014,LOC107706946 coding downstream 8992 21931327 ~ 21932340 (+)
LOC122325418 taar12f,taar12c,LOC107697103,LOC107706946,LOC107550396,LOC107550397 coding downstream 21635 21943970 ~ 21944989 (+)
LOC122325415 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 25065 21947400 ~ 21948428 (+)
G140900 NA non-coding upstream 10962 21908974 ~ 21909333 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding upstream 67174 21850862 ~ 21853121 (+)
G140792 NA non-coding upstream 70160 21849762 ~ 21850135 (+)
G140788 NA non-coding upstream 73274 21846814 ~ 21847021 (+)
G140786 NA non-coding upstream 74842 21844833 ~ 21845453 (+)
G140905 NA non-coding downstream 11649 21933984 ~ 21978548 (+)
G140907 NA non-coding downstream 45363 21967698 ~ 21969950 (+)
G140922 NA non-coding downstream 138728 22061063 ~ 22061533 (+)
G140931 NA non-coding downstream 175576 22097911 ~ 22098292 (+)
LOC122324401 NA non-coding downstream 176070 22098405 ~ 22114867 (+)
G140785 NA other upstream 75594 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 718333 21168775 ~ 21201962 (+)
G140533 NA other upstream 817785 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1128592 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1245906 20673461 ~ 20674389 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 549426 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 584392 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 822077 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 920470 22842805 ~ 22860327 (+)
pln NA other downstream 1421380 23343715 ~ 23351655 (+)

Expression


Co-expression Network