dsg2.1 (dsg2.1,LOC107687165,LOC107745992,LOC107588893,LOC107559724,LOC107712898)


Basic Information

Item Value
gene id dsg2.1
gene name dsg2.1,LOC107687165,LOC107745992,LOC107588893,LOC107559724,LOC107712898
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9713267 ~ 9725416 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220063.1
GTGACGTTTTGTTCTCCTTTTAACCCGCAAGGTGAGGGTGTGGAAGAAACAATGAATAAGGAGTTAGTGTAAAGGTCTCATTCGCATTACCGCGCATCAAGCAGCACCGGGACACACTTCTCCCGCGGCGGGATATATACTAAAGTTTCCCCCCCGAGCAGCTGGTGACAGCAGCGGATCTCAGGTGATCAGGAAATACCGTGCTCCTCCGGCCATGGCCCGGCGTGTACCGCCCGCTGTCGCTTTCCTCTTCTGTTTTGGACTATCGCATGTGTTTGAGGTTGAAGCCAGATTCCAGCACTCTGTGGCCCTCCACAGGCAGAAAAGAGAATGGATCGTCCCTCCCCAAATCTTGGAGGAAAATGTGGATTACACCAAGAGAGAGTTCATTGCAAAAATTCGCTCAGATAAAGAAGATGTCAAGCTGAAAAATGTGAGGTACTTACTGAAGGGCGTCGGCGCAGACCAGCCGCCGTTCAATTTATTTGTGGTGAATCCTGAAACTGGATACGTCAGGATAACGGGGATCCTTGACCGGGAGTCCATCGCACAATACAATCTTTCAGGCGTCGCCATGTTCACAGATGGCACGATTGCAGAAAATGACATTGGACTGAGAATAAAAGTAAAGGATCAGAATGACAACCCCCCTGTTTTTGGCGCGATGAATCCGGGGGCTGTAGACGAGCTCAGTCCAGTAGACACGGTAGTGATGAAGATGAATTGCTTTGATGCCGATGAGCCAGGAAACCCAAACTCTCAAATCAAGTATGAGATTATTGAGCAGCAGCCGGCTGGACAGAATATGTTCAGAGTTGACAGTGACGGCACGGTCCGTGTTGTCAGTCCAAACCTGGATAGAGAGACTATTGATCAGTACATCCTGCTTGTCAGAGCGTCTGACCTGAATGGAGCTGCAGGTGGCAATGCCGCCACAGGGACGGTCACCATCAAGATCAATGACGTCAACGATAATGTGCCTGTGCTGGAAGGCCCATTTGAGGCCAGTATTGAGGAAAATACACAGAACGTAGAGGTGATGAGACTTAAAGCAACCGACCTGGATCTTAAAGGCACGGACAACTGGGCGACTAAGTGCTATATTGCATCAGGCAATGAGGCTGGGTACTTCAGCATTCACACGGACCCTAAGACCAATGAGGCAGTTATTATGCTTGACAAGGCTGTCGATTACGAGGATGTCAAAGACCTAAATCTTGGCATTGGTGTAGAGAACATTGCTCCGTACCACCCCTCTGTGACTGGAGGAGGGCAGGGAATGAATATCAACTTCGGGGGCAGCGGTGGTggtgcaggaggaggaggaggcggcgGAGGAGGCGCTGGTGGAGCTGGAGGCGGCGCTGGTGGCAGTTCTGGCGGTTCATGGTCGACCTCAGGGGGTCAGATATACAATGTGAACGTCAAGGTGAAAAACCAGCCTGAAGGACCCAAGTTCATGCCCCTAACGAAAGCCATCCCCATCTCAGAAGGCAAGACTTTTAACAGCAATGAGGTCATCGCAAGATACCCCGCCATTGATACAGACACTGGAAAGGAAGCTACCAATGTAAAGTATGTTAAAGGATACGACCCAGATAACTGGCTGAGCATAGATGAGACGACTGGAGCCATTAAAATGAACAAGGCTCCCGACCGCGAGTCCAAGTATCTAGTTAACGGCACTTACATCGCCAAGATTTACAGCATAACTCAAGACTTGCCTTCAAAGACAGCAACAGGCACCATTGCCATTCAAGTAGAGGATTTTAATGACCACTGCCCAACTCTTACAAGCAAAGTCCAGACACTCTGTACTGATAAGGATGCGGTCTTAGTCACTGCAGTGGATGAGGATGCTCCACCCAATGGATCTCCATTCACCTTCAATGTTGTCCCAGAAGGAACCCAGGGCAAATGGACAGTTGAGCATTTAAATGATACCACTGCCATCTTCAGAACCCAGGACAAGCCGTGGCCGGGACAATATGATCTGATGGTGGAGGTCAAGGACCAGCAGGGGTTGTCATGTCCAGAACCTCAGAAGATTCAGGTGGATGTGTGCACCTGTACCGACCAGGGAGCTTGTGCCAGAGCAAGTGGAACAAGTGGAGCAGCAGGAGCATTAAAGAAGGGATCCAGGTTTGGAGCAGCCGGAATTGGCCTGCTCTTCCTTGGACTCCTTGCATTGCTGCTCATCCCACTCCTGTTGCTGTTGTGTCAGTGTGGAGCTGCTGGACTGGGGGGAGCTTTCACAGAAATGCCCTATGACACTAAAGAGCATCTCATCTCTTACCATACTGAGGGCCAAGGAGAGGACAGGGATGTTCCAATAGTCGACGCAATTGATGGAAGGTCAGGGTATGGTTTAAGAGACGTGGGTGGTATGCGTGGCAtgggaggagcaggaggagcaggaggagcaGCCTTCATGGACTCCTTTTCCACAATGGGTGGCCGTGGCTATAATGATATGGAAATGTCCTACATGGACTCGAGCAGAAGAAGGAGTAGAGGAATGACTATAGCTGGAGATTTTGATGGACTGGCTGCATCTGATAAGTTCCTGAGTCAATACTACTCAAATAAAAGCCGAGGAATGGAGGATGGATTTGCTAAGAATGAGTCTATAGTGTATGATTACGAAGGAAAGGGCTCTCCTGTGGGCTCTGTGGGCTGCTGCAGCATCCTCGAAGATAACAATGACCTAGAGTTTCTCAATGACCTCGGGCCCAAGTTCACTACTCTCGCTGAAATATGTGGAGGTAAAAAGCCTGAGGTCCCCGCTCCTCTTCCCCCCCCTCCCAAACCCATCGTGGACCGTACCGAGGTGGTGTCTTCATCGACTAACATCATAAACCCTGGGAATATTACCACTAACAGAGCTATATCTTCAAACGCATTGAATATAGCTTCCAACGCATCTACCCGTGTGGAGAACGTCATGGTAACAGACAACCGCCCCACAATGATCACGAGTGTCCAGCCGGCTCCAACGCTCCTGGTGCAACCGCAGCCAATGTACTACATGGTGGAGCCTCAGCCCAGCACAGTACTGCTCGCCGAAAGGCCCGCCGTGGGACAGAACATGTACGTGCTGAACAGCGGCCCGGTAGCCGAGGGGGTTGTAGTCCAGGGCGCCAACATAGCAACGAATACCCTGTCCCACGGAGAGAGAATGGTGCTTGTGGAAAGAGGGGCACCTGTTCAGGCTGGGATGCTGCACGCCGGTAATCTCTCTGGATCACAAGTGCTCCTGGTGGATGGGGGAGCCGCGAGCGGTCAAGTCCTTCAGGGGACGCTTCAGAGAGGGGTTGCTGGATCTCAGGGCCTGATGGTCGTGGAAGGACAAGGGGGTCACGTGATTCAGGGGTCCCTCCAAAAAGGCGTTTCCACTCACGGTGGATCTCAAAATGTCCTTTATATGGAGAGCAAAGGGGCATCAGGTGTGGGCCTTCAAAAGGGCATGGTGTCCACCCAAGGGTCATTCGGTAGCGTAGGATTGGGTGGGTCATCTATCCAGATTAACCAAAACCCATCGTCACATAAAGTCGTTGTCCAGGAGAGAAAGGTTGTGTCAACACAAAGTGTTAAGCAATAAAGCAGAGCTCATTCAGTAGTTGTACAGTCATAAGTGTTTAGAAAGTCATAAATCATGCCTTCATAGCTCATGTATACAAATCATTAGAGTTTCATGTTTTCAACATGTTAGGTCACAAAGAATATGCAAATAATGCTTGAAAAActggttttaatgcatttgagttTACTTCTCTGTCTGTGTAGTGCACTGTACGAgtttcgttttctttttttagtctatcccttgcatttaaaatattatgttactGCATTCAGCGTGTGCTCTGTAAAGACTGTTGTTTGCGGAAAATATGCACAAGCTGCCCTCAGGCCATTTCTGTGCAGTTTATGCAAATCGTCTGCAAGCTATTTTAGTAAAAGGCAGATATATGAGAAGATAAACACAGCCGGAAATCAGTCAAGCAGAGTCACCTCTAAAGACTATGGAAGGACagattttgtttggttttgtttttagaaaagttgtggtaatgtatattttgggtagcttttttataaaaaatgaaaagtgtgtttcattaACCAGCACTGGTATGgtttgcatttttacagtattttttaatactCTTCTTAGTTACTGTTTGTAAACAAGAAGCCTGATTAGCAAGAAGCTTGTGGTTTCTCTTTGCAGTGTGGTTAAAACGAAAAGACCAAACCTACATTCCAAGCAATAATGATCATGTGTATGAAATGTtatgattttctctctctctcagaatgCTTGTATTCATGAATACAGTAGCTAAAgcacatttcttttgtttttttgatggaatttggtacatttttttttctgcagtgggCAGTGGTTTCCTACTTTCCCAGAAATGGACTCATTAGCTACATGTTGGGAAAGTGTTGCTGGTTTTAACAGAGAAACTTTGTTCAGGGGTCAATTCAAAATGTTGTAAAGCTGCTTAAGGCTGTTtagaaattctttttttaaagcagattttataaatgtttcatatgtTTCACTGTGGAAAAGAATTCCTAAAGACAATAAAAACGTTGTTTTAATGTCA

Function

symbol description
dsg2.1 Predicted to enable calcium ion binding activity. Acts upstream of or within convergent extension involved in gastrulation; desmosome assembly; and epiboly involved in gastrulation with mouth forming second. Predicted to be located in cell junction and plasma membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arrhythmogenic right ventricular dysplasia 10 and dilated cardiomyopathy 1BB. Orthologous to human DSG2 (desmoglein 2).

NR:

description
PREDICTED: desmoglein-2-like

GO:

id name namespace
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0002159 desmosome assembly biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K07599 DSG4; desmoglein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220063.1 True 4628 mRNA 0.47 14 9713267 9725416

Neighbor

gene id symbol gene type direction distance location
zmp:0000001074 LOC107559725,LOC107656729 coding downstream 1793 9701899 ~ 9711474 (-)
ttr ttr,LOC107712897,LOC107588917,LOC107687167,LOC107712388,LOC107656732,LOC107559732 coding downstream 29355 9680846 ~ 9683912 (-)
LOC122325172 NA coding downstream 47468 9659140 ~ 9665799 (-)
LOC122325171 NA coding downstream 54574 9655671 ~ 9658693 (-)
LOC122325177 LOC107712849,LOC107687193 coding downstream 129617 9579907 ~ 9583650 (-)
LOC122325472 dhcr24,LOC107687183,LOC107581458,LOC107566150 coding upstream 258106 9983522 ~ 9985904 (-)
psma8 psma8,LOC103029839,LOC100304914,LOC107572146,LOC107723426 coding upstream 733775 10459191 ~ 10462437 (-)
gpr132b LOC107561042,LOC107723405,LOC107701477,LOC107684800,LOC107746348,LOC107572145 coding upstream 752273 10477689 ~ 10484360 (-)
vipas39 vipas39,LOC107723381,LOC107746035,LOC107701516,LOC107572140 coding upstream 759090 10484506 ~ 10493235 (-)
cdc42bpb cdc42bpb,LOC107684799,LOC107746049,LOC107723369,LOC107701514 coding upstream 768670 10494086 ~ 10550573 (-)
G137267 LOC107712887,LOC107559744,LOC107755683,LOC107687178,LOC107581453 non-coding downstream 177190 9459505 ~ 9536077 (-)
G137264 adcy1a,LOC107559745,LOC107708029,LOC107697434,LOC107687179,LOC107581454,LOC107712833 non-coding downstream 265356 9440237 ~ 9447911 (-)
G137255 NA non-coding downstream 308726 9404130 ~ 9404541 (-)
G137253 NA non-coding downstream 312058 9400382 ~ 9401209 (-)
G137250 NA non-coding downstream 320038 9392950 ~ 9393229 (-)
G137346 NA non-coding upstream 482658 10208074 ~ 10208585 (-)
G137348 NA non-coding upstream 506608 10232024 ~ 10235306 (-)
G137356 NA non-coding upstream 552523 10277939 ~ 10278186 (-)
G137441 NA non-coding upstream 732837 10458253 ~ 10458790 (-)
G137448 NA non-coding upstream 831329 10556745 ~ 10562461 (-)
si:ch73-74h11.1 LOC107687168,LOC107588915 other downstream 12729 9691124 ~ 9700538 (-)
pcsk9 pcsk9,LOC107687184,LOC107566146,LOC107697372,LOC107716550,LOC107578795 other downstream 378206 9325653 ~ 9335061 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other downstream 429884 9255548 ~ 9283383 (-)
G137056 NA other downstream 891548 8821154 ~ 8821719 (-)
G137054 LOC107660256,LOC107566921 other downstream 893940 8818854 ~ 8819327 (-)
G137330 NA other upstream 212549 9937965 ~ 9938877 (-)
G137451 NA other upstream 841881 10567297 ~ 10570737 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other upstream 996505 10721921 ~ 10724069 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other upstream 1406008 11131424 ~ 11136612 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other upstream 1416529 11141945 ~ 11182183 (-)

Expression


Co-expression Network