ostm1 (LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130)


Basic Information

Item Value
gene id ostm1
gene name LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17004595 ~ 17009548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220068.1
AGAGACGtagggaaaagaaagaaaacaggaagCGTCGTAGAGTCGCGAAACGCAGGGCGATAGCGTGTCGTATTTAGAGTGTATAAGATATGGAATTGTtaacaaaatttacatttgtattagcATGCGTATTTGCAGAATGGGCGGTTACATTCGTTGCCGTTGCTAACTGCACTATTTTCCCCTCAGAAATGAGTGGCGATAGTGCACTAAAGCTGCCACCAGCATTCATTTCCGTATCACAGAAGAGCGCTCCGGGATCCTTCTACTCTCTCGGTCTTTCATCTGCATTTCCAGAAGACAACGAGTATTGTTCTGAACTGCTTCGCATCTACGGTCAACGCTACGTGACTTTCGCGAGCTGCCTCGTGACTTACGCGCGACCTGTCAATGTGTGTCAGAACTGTTACCCCGACTACAAGAGTCTGTGGAACATTTATACTAACATATCATTGGACAAATCTACCCCTGGAAATGTCAGTTGCCATGACAGCCTGATGCGTTCTGATAGGTTGATGCTGCTCTATATCCTGTTCGTCAAATTAGATGAGATCTGGGAATCAGCAGATTGCAAGAAATGTCTGAATGAAGACCAAGACGCTCTTTCTAATGAGACTCTTAACTTCATGGCCACTCTGAATGAGTCTCTCTCCTGTTTTGAACAATACAAGAAGAACCACACTGAACTGTGTAAAGACTGCAAAACGTCATACAAAAAGTTGAGCGAGGTCTACGGCAgcatggcaaaaaaacaacagctttgcATTGATTTAGAAGACGCGATGAACATGACACAGCACCTGTGGAGTAGTAACTATAATTGCTTGTTACCTCGGGAGGAGACGGTGCCTGTCATCGCAGTGTCCAGCTTCATGCTTTTCCTCCCCGTCATTTTTTACTTAAGCAGTTTCCTGCACTCAGAACAAAAGAAGCGCAAGCTTATACACCCCAAAAGAGTCAAGTCCAGCAGCAGCCTAATGAATATCCAAGACAAATTCAGCTGAGTGGACATGAGGCATAGAGAAGGCACTGCATCTTTGGTTCATCGCTCCTACTAAACAGGCACTTTCAGCATGGGTAGGGTTCGTAACTTCTCCTGGACTCCAAGCAAATCTGGGATCAAAGACTTTAGGATGCTCCACACATGctgtattctttttctatttaaatcatttttctttttttttttgcacaatttgtGATTTGCACTATTGATATCAGTTCGCCAAGTTTTACTAATAATTCTAACAattttcttaaagaaacagtgatGATTTCTATACAGTGGATGctagtattatattattgtatttatggtATGAAGGAGATGTAATCCCGAAAGAGGGAAATTTATCTTGTATATTAGACTGGTTATGCTGCATTTTCACTGCACTATCTGTTACTATCAGAGCATGTTACATTTCATATTCTCTATTTTCCTAGGTGAtaacaaactcacacacacacacacacacacacacacacacacacacaaatgcacgtacacatacacacgcacacactcattACATGGCAGTGGTGCCACTTCTGGAAGCACTCCATGTGCATTAGAGAAAGATCTTGTAACAAATACTTTATTCAGGGGCAAAGGTGTATGCAGTGAGTAGAGGAGAAAAGTAAAGGACGGAAGAGGCAACATGAAGCTTTTTTAGATGTGCCTGTTTacttcactttttgttttacaatggATTTGCCATAGTCTTCTCTCATTGTGTGGTTATATACAGTTATTCTGAAAAAGATAATTAATGCTAATAGACCAGAGAGCTCCTTCATTTTCTGGACTCGGGTTTTGACCATAGCATTATATGAGGTAAAGTGTTTCGTACACACTGTATGCGCTAAGGTTCATTCATAGGATTTTTACATACTTCTGCGGTTGTGAAATAGTTTTCAATCCAAATAGCTTCCTCATTCCtccatttcagtttttcttaaCTCCTAAAGCCTTCCTTGGTGCGATTGACAGGCTTGTTGTTTTCAGGGTTATGTGGACTTTCCTTGGATTGCAAAGAGCCTGTTTCCCCAGTCATTAGCAGCTAATCTAAATGTAGGATAAAGTTACTTGGCCGATTAATCGTAACAACACATCCGTTAAGCTGCATTGGCTTTTTGGTCTTATGGAGCCAAGCCACACTGCCTGTTAAGCGCATTTCACTTCATTTATCCAATCATATGATCGTACAGGAATATATGGGGAAAAATAGCCTTTTCATTTGTGGCTCATGAGTGCAATGTCTAACAAGAATGACAGCTTTCATACCTGCAATGCCAGATCTGTTGGTGAAAGTCATTATTCCTGACCTGACTGCCAAATGTAGCAACCAGGCGAATTTTATGGCCACGTGTTTGAGGAACTGACGCAAAACCTGAAATACCTTTTGAAATGTATGACTCAAACCTTAGTTTACCTGACAAGAACCTTAGAGAGGATGAGGGGGAACGGGTGGGGGATAGGAGATTATCCGTCATCACGTTTTGCCCTGCTAAAATCAGAGCGGTGACTTTGGACCTTAAGCAGTGAGCCCATTATGAAATATTCCTGAGCCTGAAACTCAGCAGGGACTGATTCAACAAACCTTCAAAGTAactgctgcatttttttaaatgttgccatTATGATTTTGGATGACTTctacaaatctttttttgtgtgttgattTAATGACTGCTTTGTGCTTTTTAGAAAAACTTGCTTACTAACAAAAGtctgaatttaatttcattttttgtaagGCTGTAATATTATTACGAACAATAAAGAGAtttctaaatgtg

Function

NR:

description
PREDICTED: osteopetrosis-associated transmembrane protein 1

GO: NA

KEGG:

id description
K23863 OSTM1; osteopetrosis-associated transmembrane protein 1 (chloride channel 7 beta subunit)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220068.1 True 2799 mRNA 0.40 6 17004595 17009548
Loading

Neighbor

gene id symbol gene type direction distance location
snx3 snx3,LOC107726634,LOC107696129,LOC107679498,LOC107726474 coding upstream 21667 16970673 ~ 16982928 (+)
sesn1 sesn1,LOC107601204,LOC107679493,LOC107726620,LOC107601436,LOC107696127,LOC107726430 coding upstream 109151 16859284 ~ 16895444 (+)
cd164 NA coding upstream 150655 16843207 ~ 16853940 (+)
slc22a16 slc22a16,LOC107693213,LOC107602826,LOC107601215,LOC107726421,LOC107696098,LOC107732637 coding upstream 528590 16465966 ~ 16476005 (+)
apobb.1 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107696115,LOC107601514 coding upstream 540632 16449276 ~ 16463963 (+)
si:ch73-257c13.2 LOC107726613,LOC107679487,LOC107601189 coding downstream 2648 17012196 ~ 17014226 (+)
sec63 sec63,LOC107726621,LOC107726458,LOC107696131,LOC107679486 coding downstream 5121 17014669 ~ 17026149 (+)
scml4 scml4,LOC107726622,LOC107601197,LOC107679489,LOC107726459,LOC107601350 coding downstream 18137 17027685 ~ 17054264 (+)
lratd1 fam84a,LOC107679499,LOC107555617,LOC107601338,LOC107726628,LOC107696133,LOC107726480 coding downstream 111719 17121267 ~ 17126778 (+)
ddx1 ddx1,LOC107726609,LOC107726454,LOC107696136 coding downstream 277529 17287077 ~ 17294020 (+)
LOC122324442 NA non-coding upstream 3470 16991652 ~ 17001125 (+)
G139134 NA non-coding upstream 20603 16983056 ~ 16983992 (+)
LOC122324686 NA non-coding upstream 59723 16911947 ~ 16944872 (+)
G139081 NA non-coding upstream 244069 16759955 ~ 16760526 (+)
G139069 stxbp5a,LOC107601184,LOC107710208,LOC107602546,LOC107726399,LOC107696120 non-coding upstream 303615 16698307 ~ 16700980 (+)
G139188 nbas,LOC107602494 non-coding downstream 142696 17152244 ~ 17153246 (+)
G139218 NA non-coding downstream 303505 17313053 ~ 17313289 (+)
G139219 NA non-coding downstream 305471 17315019 ~ 17315292 (+)
G139237 NA non-coding downstream 424772 17434320 ~ 17435626 (+)
G139240 LOC107698338,LOC107555613,LOC107726610 non-coding downstream 439716 17449264 ~ 17454297 (+)
LOC122325444 rps7,LOC107668222 other upstream 1082315 15721861 ~ 15922280 (+)
G138869 LOC107732629,LOC107726464,LOC107693230,LOC107549112,LOC107601686 other upstream 1207567 15763114 ~ 15797028 (+)
aven aven,LOC107549092,LOC107756595,LOC107671777,LOC107601941 other upstream 1814376 15169355 ~ 15190219 (+)
slc10a1 slc10a1,LOC107668231,LOC107671779,LOC107756602,LOC107721315 other upstream 1989223 15003410 ~ 15015372 (+)
LOC122324585 kif26aa,LOC107721264,LOC107602192,LOC107711661,LOC107668200,LOC107569886,LOC107659150 other upstream 2734257 14210022 ~ 14270338 (+)
henmt1 henmt1,LOC107710559,LOC107698398,LOC107555628,LOC107601273,LOC107726462 other downstream 487347 17496895 ~ 17502015 (+)
ivns1abpa ivns1abpa,LOC107732388,LOC107726450,LOC107553504,LOC107599089,LOC107696153 other downstream 779746 17789294 ~ 17802450 (+)
il17a/f3 stmn4,LOC107698329,LOC107553446,LOC107732387,LOC107719388,LOC103148820,LOC106907996,LOC106571034,LOC106608277 other downstream 1019582 18029130 ~ 18034178 (+)
cnih3 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC108440801,LOC108248696,LOC106527994,LOC106571455,LOC107095392 other downstream 1598964 18608512 ~ 18634663 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 1749081 18758629 ~ 18760209 (+)

Expression

ostm1(LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
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ostm1(LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130) Expression in each Bioproject

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ostm1(LOC107726635,LOC107679497,LOC107601199,LOC107726483,LOC107696130) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
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Co-expression Network