vta1 (vta1,LOC107689447,LOC107558942,LOC107675102)


Basic Information

Item Value
gene id vta1
gene name vta1,LOC107689447,LOC107558942,LOC107675102
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19016336 ~ 19043921 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220078.1
ACGCGGAAGCAACTCCTTCGCGAGCGACTGTCATCTTTGTTATTAGCCGTTTTTTGGCCCTTGCTAATCCCAGAAGTTTGTAACAGTGTCTTTTCTTCGGCATGGCGCTCCCATCGCAGCTGAAAGCGATCCAGCACCATTTAAGAACAGCGCAGGAACATGAGAAAAGAGATCCGGTGGTCGCTTATTACTGTCGACTTTATGCCATGCAGACGGGAATGAAACTAGATAGCAAAACTCCAGAGTGCCGAAAGTTTCTTGTGAAACTAATGGATCAGTTGGAAATGaTGAAGAAGGAGCTCAGTGACAATGAATCCATCACGCAGGAAATAGTTGGCAACGCCCACATTGAAAATTACGCCTTGAAAATGTTCCTCTATGCAGACAATGAAGATCGATCAGGACGTTTCCACAAgaatatgATCAAGTCCTTCTACACCTCAAGTCTCCTGTTTGATGTGTTGAATGTCTTTGGCGAATTATCAGACGAGAATATCCAGCACAGGAAGTATGCAAAGTGGAAGGCAGCCTACATCCACAACTGTCTGAAGAATGGTGAGGCTCCGCAGCCTGGTCCTATTGGAATGGAGGGGGAAGCATATGATGATGAATTTGGTGCTGAGGGTGGCGGTCCTTCAGAAGCGCCTCACAATCCACCGCAATCTCAACCTTCTTTCCACGGCCACCCATCAAATCAACCCCCAGCATCCAATTTCAGTAATATTCAGATACCTCCTGGTTCACATGCTCCAGCCAATACACCTGCAGAGATTCCTCATCCAGAAGCACAGCCTGTCAAACCAGTGCCTGTTCCACGAAGCATGCCAGTGGTCGATCCTTCACTTCTAAACAATACCCAGGAAGgtGATGTTCGGCTCACACCAGAAGACTTTACTCGGGCtcagaaatactgtaaatatgcaGGCAGTGCACTGCAGTATGAGGATGTGGGTACTGCCGTCCAGAATCTGCAGAAGGCCCTGAAGCTACTAACCACTGGCAAAGAATAAGACCATTGTGCTGTCCCCCCCCAAACCACTTTATCAGAGATCTGGCCCAGAAGAACTGAAAAAGGGCCTTTTCCTTAGCCTCATCTGTATCAAAAAGAGGCACGCCACAGGACGCCCCCCCATCACTCAATACAACATCTGTTTCTGCCGTATTGGATGTCAATAGTTGCTCATTACTCGCCCGATGAAATACAGATACACTACACTAAAAAAATCAGGTGCATGTGAAAGACCCTTTCAAATTCTGAAGTGTTTATACATATTCATGGTTTGAGgtgctttaatgtattttttcacaACTGTTTGATTAGATATGCATGGACATGGAAGCATGTCTCGAGATATCTTTTAAGCAGGAATTCTCATCTTAACTCGACCTCTCTGCAACAGGAGCTTTAGAGACACTTTGCCCTTAACTACTTTTACTACTTTCCGTTCACTTCTGTGTGTATGCTTCAGGTGACAGGATTCTGCAGTTAGTTTGCAAAGTAACTGTTTTCTGACAATAGTTATGCATCGCTACGATCGacaataaatgttcttttattggTCA

Function

symbol description
vta1 Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to act upstream of or within protein transport. Predicted to be located in endosome membrane. Predicted to be active in multivesicular body. Orthologous to human VTA1 (vesicle trafficking 1).

NR:

description
vacuolar protein sorting-associated protein VTA1 homolog

GO: NA

KEGG:

id description
K12199 VTA1, LIP5; vacuolar protein sorting-associated protein VTA1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220078.1 True 1563 mRNA 0.45 8 19016336 19043921
Loading

Neighbor

gene id symbol gene type direction distance location
gje1a cx23,LOC107675059,LOC107717056,LOC107553438,LOC107558943,LOC107689460,LOC107727597 coding upstream 1082 19013581 ~ 19015254 (+)
heca LOC107675110,LOC107553472,LOC107689451,LOC107558939 coding upstream 171831 18839737 ~ 18844505 (+)
ncoa1 ncoa1,LOC107727606,LOC107710951,LOC107675037 coding upstream 186683 18786053 ~ 18829653 (+)
ephx1 ephx1,LOC107553477,LOC107732537,LOC107601524 coding upstream 251632 18760429 ~ 18764704 (+)
opn5 opn5,LOC107732377,LOC107732532,LOC107553443,LOC107698323,LOC107601485,LOC107690038 coding upstream 489955 18515225 ~ 18526381 (+)
adgrg6 adgrg6,LOC107553467,LOC107689445,LOC107727601,LOC107716438,LOC107675108,LOC107558929 coding downstream 2330 19046251 ~ 19080822 (+)
aig1 aig1,LOC107689442,LOC107675100,LOC107727567,LOC106607822 coding downstream 135944 19179865 ~ 19225689 (+)
pex3 LOC107727657,LOC107689441,LOC107675099,LOC107716471 coding downstream 188953 19232874 ~ 19237506 (+)
atf3 atf3,LOC107676267,LOC107727668,LOC107553464,LOC107558948,LOC107675088 coding downstream 202708 19246629 ~ 19250792 (+)
flvcr1 flvcr1,LOC107727652,LOC107676259,LOC107675086,LOC107558931 coding downstream 220170 19264091 ~ 19271465 (+)
G139785 txlnba,LOC107553470,LOC107727608,LOC107710955 non-coding upstream 156754 18858608 ~ 18859582 (+)
G139756 NA non-coding upstream 329410 18680896 ~ 18686926 (+)
G139557 NA non-coding upstream 506314 18509569 ~ 18510022 (+)
G139555 NA non-coding upstream 539331 18476352 ~ 18477005 (+)
LOC122324773 NA non-coding upstream 545260 18467995 ~ 18471076 (+)
G139847 NA non-coding downstream 150 19044071 ~ 19044201 (+)
G139851 hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 non-coding downstream 52365 19096286 ~ 19100392 (+)
G139857 NA non-coding downstream 71197 19115118 ~ 19115376 (+)
G139865 NA non-coding downstream 115210 19159131 ~ 19159493 (+)
G139867 NA non-coding downstream 116291 19160212 ~ 19160418 (+)
G139788 cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469 other upstream 142732 18871407 ~ 18873604 (+)
G139780 LOC107689450,LOC107553470 other upstream 163756 18846293 ~ 18852580 (+)
abracl abracl,LOC107727609,LOC107553474,LOC107689463,LOC107558932 other upstream 177034 18836154 ~ 18839302 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 256127 18758629 ~ 18760209 (+)
cnih3 cnih3,LOC107601529,LOC107732540,LOC106607867,LOC108440801,LOC108248696,LOC106527994,LOC106571455,LOC107095392 other upstream 381673 18608512 ~ 18634663 (+)
tatdn3 tatdn3,LOC107727653 other downstream 214876 19258797 ~ 19262323 (+)
LOC122324992 LOC107727591,LOC107575643,LOC107676232,LOC107675054,LOC107598100 other downstream 379635 19423556 ~ 19424387 (+)
mpv17 mpv17,LOC107716659,LOC107602210 other downstream 533409 19577330 ~ 19597643 (+)
LOC122324993 ift172,LOC107716708,LOC107676240,LOC107727571,LOC107602169,LOC107675043 other downstream 607861 19651782 ~ 19677692 (+)
LOC122325503 galnt14,LOC107675076,LOC107716567,LOC107727639,LOC108429358,LOC107676246 other downstream 726003 19769924 ~ 19876378 (+)

Expression

vta1(vta1,LOC107689447,LOC107558942,LOC107675102) Expression in all Baseline Samples

Bar chart with 10 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 80.
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vta1(vta1,LOC107689447,LOC107558942,LOC107675102) Expression in each Bioproject

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vta1(vta1,LOC107689447,LOC107558942,LOC107675102) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network