ttr (ttr,LOC107712897,LOC107588917,LOC107687167,LOC107712388,LOC107656732,LOC107559732)


Basic Information

Item Value
gene id ttr
gene name ttr,LOC107712897,LOC107588917,LOC107687167,LOC107712388,LOC107656732,LOC107559732
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 9680846 ~ 9683912 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220129.1
CCCCTTGAGTCACCTGATGACAGGGTCGGCCGTTGTATAAAGGGCATTCTGGGTTTTTATCTCATGCACTTGAGCTCTAACATGGCTAAAGCAGTGATTTGTATGCTTCTTGCATCTCTCCTCGCCTGCTATAGAACTGCACCAGTGGCTTTTCATGGTGGTTCCGATGCTCTCTGCCCTCTCACAGTAAAGATCCTGGATGCTGTGAAAGGGACTCCTGCTGGAAATATAGTTCTGGATATCTATCGCAAAGATCAAGGTGGGGCGTGGGAAAAGATTGCCAGTGGGAAAGTGGACATGAGCGGAGAAGTGCACAACTTGATCAGCGAGGAGGAGTTCACTCCAGGCTTGTATCGGGTGGAGTTTGACACTAAAGCCTACTGGAAGGCGGAGGGCCGTACACCTTTTCACCAGGTGGCCGATGTGGTGTTTGAGGCTCACGCTGAGGGGCATCGTCATTACACTTTGGCTCTTCTGCTGAGCCCCTTCTCGTACACCACAACAGCTGTGGTCGTCAAAGCACACGAGTGACAGCACACAACCACCTACAGAGAACTTACTTTACATCCAGGGTCCAACTTAAAGTATTTGCCACACCTTGCTATGCCAGTTTGATTGATAAAAGTGCtcgtcaaaagtttggaaatatTATCCCCTGGCttacagacaaggcttaagctgGTCTGAGATGCATGCTTGAGTTGTCTGGCTCTGACATATCTTAAGATGTGTCAGCGTCGCTGTTCTGTTCTGTGTCAAGATGCAAACCTGTAACGTTTTCTTGTTGTAAAAGttgcttaaatattttcttttaactaAGGTCtagtcctatatatatatatatatatatataatgtcatgcATTATAATAGTAGTATTAACGCATTAATTATGGCTTGTGTTGTATGATCTCATGAATAAACATTATGACTGTGTAcataa

Function

symbol description
ttr Predicted to enable hormone activity and thyroid hormone binding activity. Predicted to be involved in purine nucleobase metabolic process. Predicted to act upstream of or within retinol metabolic process and thyroid hormone transport. Predicted to be located in extracellular region. Is expressed in liver. Human ortholog(s) of this gene implicated in Alzheimer's disease; amyloidosis; carpal tunnel syndrome; dystransthyretinemic hyperthyroxinemia; and transthyretin amyloidosis. Orthologous to human TTR (transthyretin).

NR:

description
transthyretin

GO: NA

KEGG:

id description
K20731 TTR; transthyretin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220129.1 True 942 mRNA 0.44 4 9680846 9683912

Neighbor

gene id symbol gene type direction distance location
LOC122325172 NA coding downstream 15047 9659140 ~ 9665799 (-)
LOC122325171 NA coding downstream 22153 9655671 ~ 9658693 (-)
LOC122325177 LOC107712849,LOC107687193 coding downstream 97196 9579907 ~ 9583650 (-)
mep1ba mep1b,LOC107581508,LOC107687173,LOC107581493 coding downstream 105172 9555458 ~ 9575674 (-)
si:ch211-191a24.4 LOC107687195,LOC107712891,LOC107581511,LOC107697473,LOC107559734,LOC107712379 coding downstream 130644 9545841 ~ 9550202 (-)
zmp:0000001074 LOC107559725,LOC107656729 coding upstream 17987 9701899 ~ 9711474 (-)
dsg2.1 dsg2.1,LOC107687165,LOC107745992,LOC107588893,LOC107559724,LOC107712898 coding upstream 29355 9713267 ~ 9725416 (-)
LOC122325472 dhcr24,LOC107687183,LOC107581458,LOC107566150 coding upstream 299610 9983522 ~ 9985904 (-)
psma8 psma8,LOC103029839,LOC100304914,LOC107572146,LOC107723426 coding upstream 775279 10459191 ~ 10462437 (-)
gpr132b LOC107561042,LOC107723405,LOC107701477,LOC107684800,LOC107746348,LOC107572145 coding upstream 793777 10477689 ~ 10484360 (-)
G137267 LOC107712887,LOC107559744,LOC107755683,LOC107687178,LOC107581453 non-coding downstream 144769 9459505 ~ 9536077 (-)
G137264 adcy1a,LOC107559745,LOC107708029,LOC107697434,LOC107687179,LOC107581454,LOC107712833 non-coding downstream 232935 9440237 ~ 9447911 (-)
G137255 NA non-coding downstream 276305 9404130 ~ 9404541 (-)
G137253 NA non-coding downstream 279637 9400382 ~ 9401209 (-)
G137250 NA non-coding downstream 287617 9392950 ~ 9393229 (-)
G137346 NA non-coding upstream 524162 10208074 ~ 10208585 (-)
G137348 NA non-coding upstream 548112 10232024 ~ 10235306 (-)
G137356 NA non-coding upstream 594027 10277939 ~ 10278186 (-)
G137441 NA non-coding upstream 774341 10458253 ~ 10458790 (-)
G137448 NA non-coding upstream 872833 10556745 ~ 10562461 (-)
pcsk9 pcsk9,LOC107687184,LOC107566146,LOC107697372,LOC107716550,LOC107578795 other downstream 345785 9325653 ~ 9335061 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other downstream 397463 9255548 ~ 9283383 (-)
G137056 NA other downstream 859127 8821154 ~ 8821719 (-)
G137054 LOC107660256,LOC107566921 other downstream 861519 8818854 ~ 8819327 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other downstream 1079891 8591692 ~ 8600955 (-)
si:ch73-74h11.1 LOC107687168,LOC107588915 other upstream 7212 9691124 ~ 9700538 (-)
si:dkey-5n18.1 LOC107723560,LOC107687192,LOC107588914 other upstream 13750 9697662 ~ 9751383 (-)
G137330 NA other upstream 254053 9937965 ~ 9938877 (-)
G137451 NA other upstream 883385 10567297 ~ 10570737 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other upstream 1038009 10721921 ~ 10724069 (-)

Expression


Co-expression Network