si:dkey-1j5.4 (si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529)


Basic Information

Item Value
gene id si:dkey-1j5.4
gene name si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18661509 ~ 18669079 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220151.1
TGTATCTCTCTTTGTGTTGCATGTCGCGCTCCAGCgacctctttaaaaaaaaattgtactagTGGTTATAAGTctcatattaaaattttaatttgagcgGGAAGTATAACAGGCTTAACATTTTCCAGTTGAAAacgacgtaaaaaaaaaaaattgttttgtttttagtcagTTTTTGGAAACTGGATTTCGGGCACTATGTGAAGTGCCTCAGTATCTTTTGCGAAATCATAATTGTGTGCTGTGAACAATAACTGAGCTATGAACGTCAATCTCGTACAAGCTTGAGTGGCAGAAGCGTTATCTTCAGAAATCCTCCCTTTGTGTTCCACGGAAGAAAGGAGGGGCAAACATTTCGCCTCGTTTCGGACCGGGCACAGACCGACTGCTAGCTTTGCTTGAAACGGCAGCTTTGAATTTAGACGCTCAAGTCCTATTAAGCATCCGGTCGCAAGGGATATGAAGCTGGTTGCAGGGTTAGTCGTGCTGTGGCTGTGGGTTGCGGAGGCCATTGAAAATTGCCCCGATGCTTGTAAATGCAGCCAGAAATCCAGCATGGAAAAGACTGCAGTCAATTGTCAGAAGAAGGGACTTGAGAGCATCCCACCCAAACTCCCTCTGGACACTTGGATCCTTAAAATGGGTGAAAATTTATTGCAGAACCTCCCAGCCAACATCCTGAGCTCCGTTCCTAAAATTGAGAGCGTAAACTTAGAGCGAAACTCAATCAAATCAATACACCCTCAAGCATTTGCTGGTGCCCAGCGACTGATGCTTCTGAATCTGCAAGGAAACCGAATGTCCAAGCTCCCAGTGAAGGGCTTCAAAGATCTCCTAAACCTACGCTTTCTCATGCTGGGCCAGAATCAGATAGCTAGTCTGAAACCCAACATGTTCATTGGCATGAGGAACCTCTCAGAGCTGGATCTGCCCCTGAACGCCCTCACTGTTCTCCCACCAAATACATTCAAGCCTCTGATTGCCCTCAAAGTCCTGGATCTATCCTTAAACCATATCCAAAGCATCTCACCCAAAACCTTTGTTGGACTTGACGAGCTGCTTTTTCTCAATTTGGACAACAACAAGCTGAAGAATATCCAAGCGGGAACCTTTGCGCCACTGATTGGTCTTGAGATGCTGGTGCTAGACAACAATTTTCTCTCCACACTTACCGCGGCCACACTAGAAGGTCTTTCCAACCTGCAGGAGCTCTATGTGAGAAAAAACGAAATTGAGAGTCTGCCAGCTGACGTGTTCCGTCACACACCTAAACTCACTCACGTTGGCTTAAGTGGGAATCGGCTTCATTCCATTGACGGAAACATGCTAGCCAACATGCAAGGTTTAAAGGAGGTGTTTCTGCACGACAACCCATGGAAATGTGACTGTAGCATAAACTCGCTGGTACACTACCTTGCCCAGACGAGGGCTAATCACTCTCCTCTACAAAGACTTCGCTGCACCAGCCCAGAAGAGTTTCGTGATAGACCCATCCACCAGCTGAAATCTGATGAACTTCCCTGCAGGGCCTAGAAAATCCTCATGGCTGATATCATATCACGAACGACCTCCAAAAGTTGGGAGCGCAGTGAAATAACAGCGTgatattttctgcatttgaatGGCGATGCTTCACAGAACTCCAGCCACAATGACTTTGACAGGTTAATGATAGAGCTACTGTTCTGCAGATAGTCATAATTTTCACCCACACCAGTCGACTATTTTCAGGCCACCTGGAGTATTCTACAATACTAAGAAGGATGtgcctttgtttttttacttatacAAATTAAATGCCTATTTtgttatgtattaataataatatcaatatgtTTTCACGTTTAActtaatatatattctatatattatttatccaaagtgttttttttatggtcCCTCGGCATCTACATACGAAAATAATGTTAGTAGCtgcgtaaataaaaaaatcatacaaca

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 15-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220151.1 True 1959 mRNA 0.43 6 18661509 18669079

Neighbor

gene id symbol gene type direction distance location
LOC122325333 spats1,LOC107553422,LOC107736684,LOC107601458 coding downstream 53966 18604651 ~ 18607543 (-)
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding downstream 106215 18528438 ~ 18555294 (-)
tnfrsf21 tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348 coding downstream 188250 18453708 ~ 18473259 (-)
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding downstream 214137 18431833 ~ 18447372 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding downstream 229829 18419791 ~ 18431680 (-)
lbr LOC107732420,LOC107553478,LOC107698344,LOC107601526,LOC107732539,LOC107690042 coding upstream 1873 18670952 ~ 18679703 (-)
enah enah,LOC107732530,LOC107601525,LOC107732354 coding upstream 11814 18680893 ~ 18733506 (-)
slc5a6a slc5a6,slc5a6a,LOC107553475,LOC107689456,LOC107690043,LOC107601523 coding upstream 97080 18766159 ~ 18779707 (-)
rpl7l1 rpl7l1,LOC107689455,LOC107690050 coding upstream 112524 18781603 ~ 18784598 (-)
ptrhd1 ptrhd1 coding upstream 161345 18830424 ~ 18831573 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding downstream 26843 18627307 ~ 18634666 (-)
G139790 NA non-coding downstream 62597 18598694 ~ 18598912 (-)
LOC122324299 NA non-coding downstream 209377 18449944 ~ 18452132 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 249655 18405804 ~ 18411854 (-)
G139704 NA non-coding downstream 319179 18342047 ~ 18342330 (-)
G139801 NA non-coding upstream 359 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 155801 18824880 ~ 18829799 (-)
G139871 NA non-coding upstream 371711 19040790 ~ 19043914 (-)
G139903 NA non-coding upstream 490759 19159838 ~ 19160157 (-)
G139940 NA non-coding upstream 555301 19224380 ~ 19250790 (-)
G139706 LOC107683600,LOC107601464 other downstream 214560 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 311387 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 837308 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1233386 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2199293 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 585655 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 592387 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 629155 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 932453 19601532 ~ 19615202 (-)
G140227 cad other upstream 1388545 20057624 ~ 20059603 (-)

Expression


Co-expression Network