fosab (LOC107697196,LOC107719360,LOC107685356,LOC107550415,LOC107742716)


Basic Information

Item Value
gene id fosab
gene name LOC107697196,LOC107719360,LOC107685356,LOC107550415,LOC107742716
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21766414 ~ 21768602 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220155.1
GCAGTCAAACTTTGGATACCGACAGAAAGGAGAACAGCAGACGAGCAGGGAGCTAGCTGACCGAGGCTTTTGAAACCTTTCTGACTTTCTGGATATATTAGCGCTGGATAGCTCTTGCTTTTCGACTTTGGACAAGATGATGTTTACCAGCCTTAACGCCGACTGTGACGCGTCTTCCCGGTGCAGCACGGCGTCGCCGAGCGGAGAGAGCGTCGCGTATTACCCGCTCAACCAGACTCAGGAGTTCACAGACCTGAGTGTCTCAAGTGCCTCTTTCGTGCCAACCGTGACCGCGATCTCCTCATGCCCAGACCTGCAGTGGATGGTTCAGCCCATGATTTCATCTGTGGCGCCCTCCAACGGCGGAGCTCGGTCCTACAACCCAAACCCTTACCCCAAATTGAGGGTCGCTGGAGCCAAGTCCCCCAACTCCAACAAGAGAGCCAGAATTGAGCAGATTTCTccagaggaggaagagaagaaaagggTCCGTCGGGAACGGAACAAGATGGCTGCCGCAAAATGCCGCAACCGCAGGCGAGAGCTCACCGATACGCTGCAAGCTGAAACCGACCAACTTGAGGATGAGAAATCCGCCCTTCAAAACGACATCGCCAACCTGctcaaagagaaagagaggttaGAGTTCATCCTCGCCGCTCACAAACCCATCTGCAAGATCCCGTCCAGCTCCGTCTCCCCCATCCCCTCCGCTTCAGTCCCCGAGATCCACAGCATCACTACCTCAGTGGTCTCCACCGCGACCGCGCCGGTTACGACCTCTTCCAGCAGCTCGCTGTTCTCCAGCACGGCCTCCACCGACAGCTTCAGCTCCACGGTGAAGATCTCAGACCTGGAGCCCACCCTGGAGGAGTCTCTGGAGCTCTTGGCCAAAGCCGAGCTGGAGACGGCTCGCTCGGTCCCAGACGTGGACCTGTCTAGCTCTCTGTACACTCAAGACTGGGAGCCTCTCTACACGCCCGCTAACAACGACCTGGAGCCCCTTTGCACGCCCGTCGTCACCTGCACCCCGGCCTGCACCACCTATACGTCTTCCTTTATGTTCACCTACCCTGAAAACGACGTCTTCCCCAGCTGCGGGCCTGTGCAACGGCAGGGCAGCAGCAGCAACGACCAATCATCCGACTCCTTGAACTCCCCAACCCTCCTCACTCTTTGAGAATTCACTAGAGACACTTAGAATTTATATTTCTGACACACAACTTGATATAATCTGGTATTGCAGGGCTATGGAACTGACTCTATCAAGCAATCGTCATTGCTTCCTATATTTAACTGAACCATACATGCCTGCCAAATGTAGCAAGATAAGCATGGATTAACTGATTTTGCATTAATGATCTAGTTATTGTTAAGTtgactaataattttttttttttttttagtttactgGTGCTAGATTTGAATTGTTGTATTAGTGTGTTCTGAGCAATAGAGAACTGATATGTTTTGCCTTTTACGGTTGATTTCTGAATGTGTGAATTTTATTTACTCAGATGTGTGCTGCCTAACCATTGCATTAAATGGTCTGACGTCCAAGTATGAAGTTTTCTGTGAAAACGTAGTCTGTTTAATTtatgggatttttatttttgtactgaaaTGTGAACTTGCGAATTGTTTGCAAatctagaaaaaataaatattaaatgtaccAAACATTA

Function

NR:

description
PREDICTED: proto-oncogene c-Fos-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04379 FOS; proto-oncogene protein c-fos

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220155.1 True 1685 mRNA 0.50 4 21766414 21768602

Neighbor

gene id symbol gene type direction distance location
esrrgb esrrgb,LOC107685376,LOC107697200,LOC107550385,LOC107719365,LOC107708321 coding upstream 85494 21668066 ~ 21680920 (+)
gpatch2 LOC107708325,LOC107593261,LOC107685352,LOC107550410 coding upstream 101480 21656663 ~ 21664934 (+)
dnmt3aa LOC107593266,LOC107721450,LOC107685348 coding upstream 145343 21583612 ~ 21621071 (+)
dtnba LOC107721443,LOC107685345,LOC107593267,LOC107550403 coding upstream 184880 21556765 ~ 21581534 (+)
LOC122324300 kif3c,LOC107690993,LOC107593268,LOC107697206,LOC107721442,LOC107719402 coding upstream 216390 21534504 ~ 21550024 (+)
tmed10 tmed10,LOC107697197,LOC107685358,LOC107593259,LOC107550417 coding downstream 2690 21771292 ~ 21774369 (+)
eif2b2 eif2b2,LOC107719358,LOC107685362,LOC107697194,LOC107742715 coding downstream 6282 21774884 ~ 21779245 (+)
rmdn3 rmdn3,LOC107593256,LOC107685363,LOC107719355,LOC107697192 coding downstream 19357 21787959 ~ 21794143 (+)
bmf2 LOC107550420,LOC107593255,LOC107719427,LOC107685367 coding downstream 48601 21817203 ~ 21824119 (+)
taar10 LOC107697082,LOC107550377,LOC107719389 coding downstream 121549 21890151 ~ 21891194 (+)
LOC122325564 NA non-coding upstream 27667 21735966 ~ 21738747 (+)
G140747 NA non-coding upstream 30742 21732575 ~ 21735672 (+)
G140698 NA non-coding upstream 67156 21698421 ~ 21699258 (+)
G140721 NA non-coding upstream 129220 21636509 ~ 21637194 (+)
LOC122325460 NA non-coding upstream 213300 21551685 ~ 21553114 (+)
G140784 NA non-coding downstream 71621 21840223 ~ 21840465 (+)
G140786 NA non-coding downstream 76231 21844833 ~ 21845453 (+)
G140788 NA non-coding downstream 78212 21846814 ~ 21847021 (+)
G140792 NA non-coding downstream 81160 21849762 ~ 21850135 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding downstream 82260 21850862 ~ 21853121 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 564452 21168775 ~ 21201962 (+)
G140533 NA other upstream 663904 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 974711 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1092025 20673461 ~ 20674389 (+)
trdn LOC107602167,LOC107727612,LOC107675223 other upstream 1174255 20554113 ~ 20592159 (+)
G140785 NA other downstream 75544 21844146 ~ 21844701 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 703159 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 738125 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 975810 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 1074203 22842805 ~ 22860327 (+)

Expression


Co-expression Network