fip1l1a (fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463)


Basic Information

Item Value
gene id fip1l1a
gene name fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11484137 ~ 11506327 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220158.1
GTCTCTTTGGTAACGCGCACCTGCTACACCAGCACGCGGCGTGTCACTGTGACAGCTGGGACGGTAAACCCTGAAACTATTACCACGCCACGCAAAGTTACTCTGTCGGGCTCGGCGAGTCACTGAGTTGAACCGAGCCTCTGATCGCACAGCAAAGGCGTAAAAAGCCCGGAGGTGATCATGTCCACAAGAGAGGCGGAGAAAGCAGCTGATGAGAGCGCCGATGACGAGACGGACTGGCTTTATGGAGATGACAATTTTGATGAAGAAGAAACAACAGATAAGGAAGTATTCAGTGCTCTGATCGGTGACGTGGATGGCATGAATGGACTCAATTACCAGGAAAGTGAATCAGACAGCGATGATGATGTCTGTGTGACCATCGGTGACATTAAAACAGGCGGATCTCAGGGCTCGTCATTTGGTTCCAGTTCCATAAGTCTTAACATAAAGACCTCTGTGTCCGGCTCCAAGTCCAGAGGGCTGGATCTGGATGCTGAAGGCAATGTCCTGCAGGTGGATGTGGAGTCCTTTGAGGAGAAGCCATGGAGGAAGCCAGGTGCGGATCTGTCTGACTACTTTAACTATGGTTTTAATGAGGACACCTGGAAGGCATACTGCGACAAACAGAGACGACTACGCATGAGCCTAGAGATCCTGAGCCTGGGGTCGTCAAGCAAAATAATGgttCATCAGAATTGTAGTGGTGATTTAGACACTCATCACTCATCCAGGAAGTTGAGTGGTTCGATCAATGTTATCGGAGGACAAGCAGGGACCATCAGTCGAGTGGAAGGCAGAAGACGTCACAGCGCTGATGAAAATAACATCCAGgTTGTGTCAGAGCAGTCCTCGGACACAGAGCTATCTTCCCCAAAGCTGTTGCCCTTCTTTCCTCCCAATATCCCACCTCCACCTTTCCCTCCTCCCTCCATCGGCACCACACCACCCCTCATACCACCACCACCCGGTTTTCCATTACCTCCCGGTGCCCCTCCTCCTATGATACCACCATTAGATAGTGGACATTTGGCGGGAGTCTATGATCGACGCTCAGCTACATCTTACCCCTTCCCTGCagGCGTTTATTCACCTGCTGTGGGCATGGCTTCATGGTCAGGTGCGATAGACAGTGGCAAAGCGTGGGAAAACTACACTCGCCATAACAAAGAAAGGGTGCGAGAGAAAACCAGAGAAAGAGGacacaagaaagagagagagcggtGTAGAGAAACAGATCGAGAACGCAGTCCATCCTCACAAGATCACAGAAGTGAGGAGGAGCGTGCGTCTCGACACAGGGATCACGGTCATTACGGAAGCGAGAGGTACCGGGAAAGTTCGGGAAGAGAAGGAATGAGAGACAGACATCGAGAAAGACGACATAGAGACAGGAATGAACAACACAGATCCTCACGCAGTGGCAGCAGTAGGAGGCGTCATGATAGCGATGACGCGGATAGCCACAGGAGACACAGGCACAAACGCTCTAGACACAACCGAGGAAGCCTTGAGCCCAGCGAGGAGTGCAGTGTGGACCAGGAGAACCAGTCAGAGGCCACTGAATAACTCCCTGGCCAGCTGGTGAGCCCGTTTGTTGACCAGTAGGAGGTCTTTAGTGAAAGATCATTAGTCTCGTCACCAGTCAGAGCACGAGTAAATAACTGTGAATAGATTTTGATTAATCGTATGCCAAACACTTGAAAAGCCAATTTATGTTACCGTTTTAgcaatttaacatttaagttttttgaaaatctgattga

Function

symbol description
fip1l1a Predicted to contribute to RNA binding activity. Predicted to be involved in mRNA polyadenylation and pre-mRNA cleavage required for polyadenylation. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human FIP1L1 (factor interacting with PAPOLA and CPSF1).

NR:

description
pre-mRNA 3'-end-processing factor FIP1 isoform X2

GO: NA

KEGG:

id description
K14405 FIP1L1, FIP1; pre-mRNA 3'-end-processing factor FIP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220158.1 True 1766 mRNA 0.50 15 11484137 11506327

Neighbor

gene id symbol gene type direction distance location
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding downstream 124098 11339863 ~ 11360039 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding downstream 164218 11301144 ~ 11319919 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 416731 11061914 ~ 11067406 (-)
trnal-cag_34 NA coding downstream 551493 10932562 ~ 10932644 (-)
eif2b4 eif2b4,LOC107723173,LOC107589057,LOC107697314,LOC107701499,LOC107561932 coding downstream 551822 10925463 ~ 10932315 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding upstream 98303 11604630 ~ 11607753 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding upstream 162813 11669140 ~ 11676651 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 186455 11692782 ~ 11704023 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding upstream 206615 11712942 ~ 11716297 (-)
zar1 zar1,LOC107755254,LOC107683947,LOC107718383,LOC107597447,LOC107601952 coding upstream 289071 11795398 ~ 11796899 (-)
G137644 NA non-coding downstream 256772 11215226 ~ 11227365 (-)
G137621 LOC107739294,LOC107553647 non-coding downstream 289290 11191659 ~ 11194847 (-)
LOC122325111 NA non-coding downstream 369212 11113796 ~ 11114925 (-)
LOC122325152 NA non-coding downstream 546763 10934946 ~ 10937374 (-)
G137588 NA non-coding downstream 677357 10806521 ~ 10806780 (-)
G137751 NA non-coding upstream 105696 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 117266 11623593 ~ 11631094 (-)
G137748 NA non-coding upstream 122297 11628624 ~ 11631015 (-)
LOC122325628 NA non-coding upstream 122801 11629128 ~ 11629249 (-)
LOC122325626 NA non-coding upstream 123393 11629720 ~ 11629841 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 115647 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 301954 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 347525 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 760068 10721921 ~ 10724069 (-)
G137451 NA other downstream 913400 10567297 ~ 10570737 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 176078 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 712436 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 716483 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 735474 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1754592 13260919 ~ 13264284 (-)

Expression


Co-expression Network