sox11b (LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258)


Basic Information

Item Value
gene id sox11b
gene name LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15519210 ~ 15521783 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220182.1
GGCAGTCGGTAACTTTGAAAAGAGGTTTGTCTTAGAGTGCGGCAGCTGCGAGTCTATCAAGGGAGAAAAGTATCTTTGACCATGGTGCAACAGACGGAGCACAGCGAGACGGAGAGCAGCATGTCGCGAGAGACCACAGACACCGAGGAGAACGAACTGATGGCGTGCAGCCCGGTGCCACCGAAACCGGACTGGTGCAAGACAGCCACCGGCCACATTAAACGACCCATGAATGCCTTTATGGTGTGGTCCAAGATCGAGAGGAGAAAAATCATGGAACAGTCACCGGACATGCACAATGCCGAGATCTCCAAAAGACTGGGGAAGCGGTGGAAAATGCTGAAGGACAGCGAAAAGATTCCCTTTATCCGCGAAGCCGAGCGGCTCCGGCTCCAACACATGGCTGACTACCCAGACTACAAATACAGACCGAAGAAAAAACCAAAGCTCGACACAAGTTCTTCGAAACCAGCGGTGCAGTCGCCGGAGAAGATCGGCAAAAGTGTCAAAGCTGCAGGGAAGAAGTGCGCGAAACTCAAGCCGAGCAAACCGGGAAACATTACCGCCAGAGCGTCTTCGCAAGACTGCAGGTTCAACTATGTTTTCACAAACTTAAAAGTGACCAAGTCTATCAAAAGGGAACTTACTGACGACGAAgatgacgacgacgacgacgacgacgaggAGGACGACTACGAGGAAGAGGAGCACGTCAGGCTGCACAACGTCCCCGCGAGCCCCACGCTGAGCTCCGCCGCGGAGTCCGAGGGCGCCAGCATGTACGAGGAGTCCAGGCACGCGAGCGCGGTTCCCGGCAGCAGACTGTTTTACAACTTCAAGAACATTACCAAGCAGAGCGCAGCTTACCCTGCCTCGGTGTCACCAGCATCCTCTTTCAGGTCCGTCTCTTCTTCGTCCAGCAGCTCCAGCGAGGACTCCGATGACTTGCTGGTAGACTTCAGTTTGAACTTAGCGGCGGGCTCTCACTCGACGGACTTGGGCAACACTTCAGGAAACCTTTGTCTCTCTCTGGTGGATAAAGATTTGGACTCTTTCAGCGAGGGCAGCCTCGGTTCTCACTTCGAGTTCCCGGACTATTGCACCCCCGAGCTCAGTGAGATGATTGCGGGAGACTGGCTGGAGGCGAACTTTTCAGACCTGGTTTTCACTTACTAACTGACGAACTCCTCCAGAACCAAGGAGGCATCTCGCATCTTCAGGTTATTTTTTGACTCTGCCTCCGTGGATGTCCCGGTTAAGACGGCGGAACCTGCGTTACGAGATTTGTaacgtagaaaaaaaaagtgacatggTCAACATTGacagtgctgtgtgtgtatggCAAGCGCTTTTAACATGTATTCCTTAAAACTACATAGCTTCTACTTTTATCTgacaagcagtttttttttatccttgtaAGCCAttagttggtgttttttgttttagttttgtttttttcagttcactgtGAATTTTATGTCTTTGCTGCTAGTCACTATGCCAGTAGTAAAAAGAAACCGTTCCATTTCAAAAGGTACTAGTGTAGGATAATGACTAGGAGGAATGATGTGCATATAAATGATTGATTACTAGTGAAACTGAGATGCTAACCACTATTAACTCACTTACtagtaattaaaataagtgCTAGTCACATGAAAATAGATTCCAGTTAGTTTAAGGCAATAAATGTTAAAGTAGCTTGCCATAGTGTGTGGTTATTCTGTGGGGTTGCAGTGAAACTGCTTAAACTATGGTGGAGcgcaaaatgtaaaatctgaaCTATGCATTCCCATCCCACCCATATCTCTACAGGGAGCTGGTAAACGGTTGCTGGACCGAATGGAGGCAGTTCTGAAACACTGTTCAGGATGGAACTTTTTCTGAGGTCTTATGTAATTTCTTTACGccacaaatgtttcttttttttgtgtgtaaccGGTTCCGTTTCCCTCCAAGTACGGGAATATTTAAGCAGATAACCACTCTAGAACACACAGGTATGGCAGGAAGCATTTTGATACATGACCAACATAcctcatctttttaaaaaaaaaaagtaaaatattttctggCATATTTTTGTACAGTTAAAGGGAATGTTCTTACTGTGCTTTAAGTGAGGTTTCTTCAGGCACTTCAACCCGGTTTCATTTGTAAAAGCATGCAAGAATTAAACTGAGAAGTCGACTTGCATTTAAATGCCTGGTTATTATTTTACTCGAGGCAAATGTACAGCTGTAGATCTGAAGCGTTTCTATAGGGAAGTGTACAATGGAATTGGGGGAACACATGAGCCTCATTTCTGGTACTAGATTGAAGATTGTATATGTTCTGTAATATAGTAAAGCTAGGAGTTTATGTATATCTGTGTGAATGGGTCCCAAATAGCAGGTGTAAAACtggattttgttttgcttttttatttttatcataatggcacatttgtttttcattattttgtgcaatataCTCTCAAAATGGACCATCTGCGTTTTGTAGCAAAGGAAATGAGTTACATGTCGTCATGCTGAAGTCTGTATCTGACACAAATAAATCAGCTGGAACTGA

Function

NR:

description
rtSox24

GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0009611 response to wounding biological_process

KEGG:

id description
K09268 SOX11_12; transcription factor SOX11/12 (SOX group C)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220182.1 True 2574 mRNA 0.45 1 15519210 15521783

Neighbor

gene id symbol gene type direction distance location
rnf144ab rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108 coding downstream 67199 15438737 ~ 15452011 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding downstream 100441 15416967 ~ 15418769 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding downstream 149180 15365958 ~ 15370030 (-)
cpsf3 cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862 coding downstream 169989 15343944 ~ 15349221 (-)
taf1b LOC107575862 coding downstream 211927 15302806 ~ 15307283 (-)
LOC122325442 rps7,LOC107668222,LOC107726469,LOC107601753 coding upstream 320420 15842203 ~ 15845477 (-)
LOC122324514 rps7,LOC107668222,LOC107726469,LOC107601753 coding upstream 397801 15919584 ~ 15922857 (-)
LOC122325615 NA coding upstream 397997 15919780 ~ 15920000 (-)
LOC122325618 NA coding upstream 398498 15920281 ~ 15920501 (-)
LOC122325614 NA coding upstream 398998 15920781 ~ 15921001 (-)
G138853 NA non-coding downstream 2140 15516843 ~ 15517070 (-)
G138828 NA non-coding downstream 138241 15370608 ~ 15380969 (-)
G138811 NA non-coding downstream 171929 15331801 ~ 15347281 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding downstream 194930 15323572 ~ 15324280 (-)
LOC122324712 NA non-coding downstream 675474 14839057 ~ 14843736 (-)
G138862 NA non-coding upstream 162393 15684176 ~ 15711053 (-)
LOC122325621 NA non-coding upstream 200263 15722046 ~ 15722265 (-)
LOC122325623 NA non-coding upstream 200767 15722550 ~ 15722769 (-)
LOC122325616 NA non-coding upstream 201280 15723063 ~ 15723283 (-)
LOC122325612 NA non-coding upstream 202227 15724010 ~ 15724230 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 503941 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 516008 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 1073285 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1320682 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1751386 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 320615 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 321115 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 321626 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 322571 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 468366 15990149 ~ 15993645 (-)

Expression


Co-expression Network