arf6a (arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149)


Basic Information

Item Value
gene id arf6a
gene name arf6,arf6a,arf6.2,ARF6,LOC106608083,LOC105893149
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26214663 ~ 26216463 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220188.1
GTAGTAGGATCCGGGAGCTCGAAAGCCAAATGGCGCAGTGCGCCTGAGcaagaaagagaggaagtggCGGCCGAAGCAGCTCCGCACCTTTTCCGGTAACACCGACAGCGGCGCGACCGGGACCGAAAGAGCGACCGGAGAGGAACAGAAGGGACCGAACCGAGCCGGGGCGCGCGAGAGGGGGGCCGTTACGTGAGGGACGGAAGAGGGGAAGCGAAGGATGAATGACTGACGTTTGACCGAACGAACGATCTGAAGGGAATGAGCGCGAAAAAAAGGCGACCCGACAGCCGGTACACGAGAAGGAAGTCTGAGGAAACCAGAAAGGCCTGTCACGGATCTCAACGCGTACTACACTAGGACCCCTTTTTCCAGATTTGGAGGGTGGTGCTAAAGGCTAAAAagttgaagtgtttttttttttgttttgttttggggtttttttctgagGCATAGCCGAGAAAGCCCCCCAAACCGCGCGCTCTCCTCTTCCCGCGAAACAAACGCGATAATATATGCCCGGCCAACAAGATGGGGAAGATGCTTTCGAAGATCTTCGGCAACAAGGAGATGAGGATATTGATGCTCGGGCTTGACGCGGCGGGGAAGACGACGATCCTTTACAAACTCAAACTGGGACAGTCGGTCACCACCATCCCGACGGTGGGGTTCAACGTGGAGACCGTGACGTACAAGAACGTCAAGTTCAACGTGTGGGACGTCGGCGGCCAGGATAAGATCCGTCCTCTCTGGCGGCACTACTACACCGGAACCCAGGGCTTGATCTTCGTGGTGGACTGCGCGGACCGCGACCGGATCGACGAGGCGCGACAGGAGCTGCACCGCATCATCAACGACCGCGAGATGCGCGACGCGATCATCTTGATCTTCGCCAACAAGCAGGACCTGCCGGACGCCATGAAGCCGCACGAGATCCAGGAGAAGCTGGGTCTGACCCGGATCAGAGACCGGAACTGGTACGTGCAGCCGTCCTGCGCGACGACGGGCGACGGACTCTACGAAGGGCTCACCTGGCTCACGTCTAATTACAAGTCCTAACGCGAGGCGGCCAAGACGCGCCGAAACTAGAAGCAATTAACCAGTAACTCTGGCTTCTGTCTGTAAAGTTCGGTTTGATTCTCTGTCTTTGATTCCGTCGACGTGTAACCCGACTTTTCTTTCTGTAGTCCTCCTGTTAAGCCCGTCAAGTATTGCTTTCAGAAGCGTTTTCGCAGAAAAAgataaagggttttttttgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccgaaGACCCGGTTcgtcagtcaaaaaaaaaaaatggcagcttGTTTGTTTACCTCCGTGCCATCGCGTTTAACGAATGTATCGGGAGAACGAGAACGATCCGGTCGCGTTCCGTGAAGAAACTGTCCTCGAAGGAGCGCTCGAGTCGTTCCTGGCCGTTCCTGGAGGAGAAGCCGGGAACGAGTGTGACTTGAGCGAAGAAAACCAGTGTTTCTGATCTAATCCAGCCCCCTCTTAACCCGTTTCTATCGCGGTCCCGGTACCGACCCCCGCACAAGTCACACCaagcctctttttttctctcactaaattaatgctttgttttattattttgacatatttgttatgctgaagaaataataaaaatctatatatatatccagcA

Function

symbol description
arf6a Predicted to enable GTP binding activity. Acts upstream of or within intrahepatic bile duct development. Predicted to be active in endocytic vesicle; recycling endosome membrane; and ruffle. Is expressed in intestinal bulb; liver; and pancreas. Orthologous to human ARF6 (ADP ribosylation factor 6).
arf6 Enables GDP binding activity; GTP binding activity; and thioesterase binding activity. Involved in several processes, including positive regulation of actin filament polymerization; regulation of Rac protein signal transduction; and ruffle assembly. Located in several cellular components, including Flemming body; cytoplasmic vesicle; and filopodium membrane.

NR:

description
ADP-ribosylation factor 6

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0031529 ruffle organization biological_process
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0051489 regulation of filopodium assembly biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0060998 regulation of dendritic spine development biological_process
GO:0030838 positive regulation of actin filament polymerization biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0001889 liver development biological_process
GO:0033028 myeloid cell apoptotic process biological_process
GO:0090162 establishment of epithelial cell polarity biological_process
GO:0030866 cortical actin cytoskeleton organization biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0097284 hepatocyte apoptotic process biological_process
GO:0001726 ruffle cellular_component
GO:0030139 endocytic vesicle cellular_component
GO:0031527 filopodium membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005938 cell cortex cellular_component
GO:0010008 endosome membrane cellular_component
GO:0005525 GTP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0031996 thioesterase binding molecular_function

KEGG:

id description
K07941 ARF6; ADP-ribosylation factor 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220188.1 True 1682 mRNA 0.53 2 26214663 26216463

Neighbor

gene id symbol gene type direction distance location
LOC122324910 peli2,LOC107567396,LOC107574485,LOC100334245,LOC103047193,LOC108410474,LOC108258111 coding downstream 3478 26197579 ~ 26211185 (-)
actr10 actr10,LOC106608088 coding downstream 30573 26176901 ~ 26184090 (-)
LOC122325525 LOC107567392,LOC107713860,LOC107567391,LOC107567390,LOC107756058 coding downstream 38593 26168534 ~ 26176070 (-)
LOC122325524 LOC107567392,LOC107713860,LOC107567390,LOC107567391,LOC107756058 coding downstream 51612 26159166 ~ 26163051 (-)
LOC122325523 LOC107659807,LOC107567392,LOC107756058,LOC107659806,LOC107713860 coding downstream 62140 26149891 ~ 26152523 (-)
fkbp3 fkbp3,LOC107717646 coding upstream 18956 26235419 ~ 26242824 (-)
LOC122324887 LOC107659807,LOC107756058,LOC107659806,LOC107567392,LOC107737847 coding upstream 69350 26285813 ~ 26287605 (-)
LOC122324888 NA coding upstream 71374 26287837 ~ 26288247 (-)
LOC122324886 LOC107567392,LOC107713860,LOC107567390,LOC107567391,LOC107756058,LOC107756053 coding upstream 73306 26289769 ~ 26292156 (-)
LOC122325526 LOC107659807,LOC107756058,LOC107567392,LOC107713860,LOC107659806 coding upstream 83034 26299497 ~ 26301875 (-)
G142282 NA non-coding downstream 22745 26190063 ~ 26191918 (-)
G142273 LOC107756044,LOC107737847,LOC107556799,LOC107567391,LOC107567392,LOC107713860 non-coding downstream 39784 26149891 ~ 26174879 (-)
G142247 NA non-coding downstream 137590 26021487 ~ 26077073 (-)
G142242 NA non-coding downstream 159098 26018719 ~ 26055565 (-)
G142245 NA non-coding downstream 181465 26017371 ~ 26033198 (-)
G142280 NA non-coding upstream 13843 26230306 ~ 26231483 (-)
G142297 NA non-coding upstream 51449 26267912 ~ 26268125 (-)
G142299 NA non-coding upstream 53174 26269637 ~ 26270044 (-)
G142346 LOC107737847,LOC107556799,LOC107713860,LOC107756044,LOC107567391 non-coding upstream 94748 26311211 ~ 26311698 (-)
G142347 NA non-coding upstream 103407 26319870 ~ 26320141 (-)
G142281 NA other downstream 26744 26185660 ~ 26187919 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other downstream 117692 26088415 ~ 26096971 (-)
LOC122324466 samd15 other downstream 160194 26050829 ~ 26054469 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other downstream 460655 25747667 ~ 25754008 (-)
G142058 NA other downstream 564570 25648492 ~ 25650093 (-)
G142278 NA other upstream 15561 26232024 ~ 26234245 (-)
rps29 NA other upstream 266858 26483321 ~ 26560387 (-)
G142444 slc25a45,LOC107722745,LOC107702892,LOC107662097 other upstream 706352 26922815 ~ 26924987 (-)
LOC122325335 LOC107560343,LOC107662067,LOC107702954,LOC107752242,LOC102202980,LOC101487699,LOC102291410 other upstream 1013340 27229803 ~ 27257482 (-)
tex55 LOC107560331,LOC107702887 other upstream 1259631 27476094 ~ 27478227 (-)

Expression


Co-expression Network