ptgs2b (ptgs2b,LOC107732418,LOC107698381,LOC107553505,LOC107599092,LOC107726413,LOC107696154)


Basic Information

Item Value
gene id ptgs2b
gene name ptgs2b,LOC107732418,LOC107698381,LOC107553505,LOC107599092,LOC107726413,LOC107696154
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17679203 ~ 17682955 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220196.1
ttgATTCATTTTCTGATCTGAACCCGCGAGGAACGACCCAACACATCTACTACTATACGCCACTGGAATGAACAGTTtggtattatttattcttttgcaCCTGGGGTTCATGGTTTGCCAGGGAGCCAACCCCTGTTGCTCTCAGCCGTGTCAGAATCGAGGTGTCTGTACGGCATTGGGCTCGGACTCGTATGAGTGTGACTGTACGCGGACTGGATATTACGGTGAAAACTGCACAACACCCGAGTTTCTCACATGGTTGAAAGTGTCTCTGAAGCCTTCTCCCAACACGGTGCATTATATTCTCACACACTTCAAAAGCCTGTGGAATATCGTCAACAACGTGTCGTTTTTGAGAAACGGCATAATGAAATACGTGCTGACATCTCGCACCCATCTGATTGATAGCCCTCCTATATTCAATGCTGACTATGGTTACAAAAGCTGGGAAGCCTACTCAAATCTCTCCTACTACACTCGCACGCTGCCACCTGTCCCGGACGATTGCCCAACACCTATGGGAGTTGCAGgaaAGAAAGAGCTGCCAGATGTGAAGCTTCTGGCCGAGAAGCTGCTTCTCAGGAGGAAGTTCATCCCGGACCCTCAACGCACCAGTCTTATGTTCGCTTTCTTCGCCCAACATTTTACACACCAGTTCTTTAAAACCGACATGAAGAAAGGTCCAGCCTTCACAAGAGCCCTGAATCACGGGGTTAACTTGGGACACATATATGGTGAGGACCTTGAACGCCAACACAAGCTGAGACTTTTCAAGGATGGCAAGCTGAGATATCAGGTTCTGGATGGTGAGGTTTATCCTCCGGTAGTCAGTGAGGTTCAAGTAGACATGCACTACCCTCCTCATGTACCTGAGTCCCATCGTTTTGCCGTTGGTCACGAAGCCTTTGGTCTGGTTCCTGGACTCATGATGTATGCCACTATCTGGCTGCGTGAACACAACCGAGTGTGTGATGTACTAAAACAGGAGCATTCTGACTGGGATGACGAGAGGCTGTTTCAGACCACAAGGCTTATTCTTATTGGCGAGACTATCAAGATTGTCATTGAAGATTATGTGCAACATCTCAGTGGATACCACTTTAAGCTCAAGTTTGATCCTGAACTTCTCTTCAGCGAGCGTTTCCAGTACCAGAACAGGATCTCTTCTGAGTTCAACACTCTTTACCACTGGCACCCCCTTATGCCTGATGAATTTCATGTCCAGGATGAAGTCTACAATTATAAGCAGTTTCTCTTCAACACGTCTATACTGACAGACTATGGCGTCAACAGCTTGGTTGAGTCCTTCACCAAACAGATTGCTGGAAGGGTGGCTGGAGGGCGTAATGTTGCACCAGCTGTGTTAAGGGTGGCCATAAAGTCGATTGAAGACAGCAGGCAAATGCGATACCAATCCATCAATGCCTACAGGAAACGTTTCAACATGAAGCCATACAAATCCTTTGAAGAAATGACAGgagAAAAGGAGATGGCTGCTGATCTTGAAGAGTTATACGGGGATGTGGATGCTGTGGAGCTTTATGCTGGGCTGCTGGTTGAGAAGCCCAGGCTCAATGGCATTTTTGGGGAGACCATGGTAGAAATGGGTGCCCCCTACTCCCTCAAAGGACTTATGGGAAATCCCATTTGTTCCCCCGAGTACTGGAAACCGAGTACCTTTGGTGGCAAAGTGGGCTTTGAAATTGTCAATACAGCCTCTCTTCAGAAATTGGTTTGCAATAATGTCAAAGGGCCCTGCCCCATGGCGTCCTTCAACGTGCCTAATGTAAAAGATTCAGTACCAACCACCATTAATGCAAGTACTTCCCACTCGGATCAAAACGTCAACCCAACAGTTTTGCTGAAAGAACGGACATCTGAACTTTGATAGATGTATTTTGCTagaaagttatttattatttatttatttataggttatttattttatttattgtaccaagaaatgtgtattttaattaatatttttgtatttttgaatgatttttgtaaaaatctgatgctttgtttttaacactatttattaaatatgtacattgtatgtgttgtaaaaaatgtttacattagaCCTCAGATTTTAGCACTGATATATGTTGAATAGTTTATCATGATTTTACTTGAATCTCGTTTCTAGTTGtttacaatgttaaaatgttttatcttgtgttgtttgtttacgtctgccttttttcttcctttgttTCTTTCAATCCTTGTAATGAAACATCTCAAGATCTCAGAATACtaatcaaaagtttttttcGAATGAAATATCTCACACTGTTTTGTCTTTGTGAACACGTTTTATCTAAAAAGTATTgaattgtttcttatttttatacttGAAATATGACCTTcgaaaataataaatcacaataagTCTAATACTTTTA

Function

symbol description
ptgs2b Enables peroxidase activity. Acts upstream of or within cellular response to organic cyclic compound. Predicted to be located in endoplasmic reticulum membrane. Is expressed in several structures, including gonad; heart; kidney; male organism; and nervous system. Human ortholog(s) of this gene implicated in several diseases, including Barrett's esophagus; arthritis (multiple); cardiovascular system disease (multiple); liver disease (multiple); and lung disease (multiple). Orthologous to human PTGS2 (prostaglandin-endoperoxide synthase 2).

NR:

description
prostaglandin G/H synthase 2

GO:

id name namespace
GO:0006979 response to oxidative stress biological_process
GO:0071407 cellular response to organic cyclic compound biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004601 peroxidase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K11987 PTGS2, COX2; prostaglandin-endoperoxide synthase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220196.1 True 2411 mRNA 0.42 10 17679203 17682955

Neighbor

gene id symbol gene type direction distance location
pdcb pdcb,LOC107553506,LOC107698383,LOC107732392,LOC107726497,LOC107696164,LOC107599093 coding downstream 12837 17663502 ~ 17666366 (-)
tprb LOC107732389,LOC107553507,LOC107696139,LOC107599094 coding downstream 17139 17644978 ~ 17662064 (-)
scyl3 scyl3,LOC107698387,LOC107726436,LOC107599096,LOC107732421,LOC107553510,LOC107696147 coding downstream 43347 17629431 ~ 17635856 (-)
LOC122324568 NA coding downstream 70258 17603658 ~ 17608945 (-)
LOC122324572 NA coding downstream 76778 17597393 ~ 17602425 (-)
hmcn1 hmcn1,LOC107732365,LOC107698379,LOC107726475,LOC107696172,LOC107553432 coding upstream 21963 17704918 ~ 17772741 (-)
kifap3a kifap3a,kifap3,LOC107726482,LOC107696146,LOC107698375,LOC107732413,LOC107553501,LOC107599114 coding upstream 160584 17843539 ~ 17861031 (-)
slc25a24 slc25a24,LOC107553450,LOC107732372,LOC107698372,LOC107726490,LOC107696157,LOC107599083 coding upstream 284141 17967096 ~ 17975299 (-)
si:ch211-63o20.7 si:ch211-63o20.7,LOC107732427,LOC107726431,LOC107698369,LOC107599081,LOC108439852 coding upstream 306357 17989312 ~ 17995262 (-)
znf395b LOC107698366,LOC107553496,LOC107732419,LOC107696161 coding upstream 324991 18007946 ~ 18013527 (-)
G139387 NA non-coding downstream 62695 17615793 ~ 17616508 (-)
G139386 NA non-coding downstream 63504 17615148 ~ 17615699 (-)
LOC122324574 NA non-coding downstream 119733 17555855 ~ 17559470 (-)
LOC122324490 NA non-coding downstream 269708 17396342 ~ 17409495 (-)
G139323 NA non-coding downstream 283205 17394864 ~ 17395998 (-)
G139565 NA non-coding upstream 106243 17789198 ~ 17794072 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding upstream 112529 17795484 ~ 17799866 (-)
G139590 NA non-coding upstream 205613 17888568 ~ 18180187 (-)
LOC122324448 NA non-coding upstream 210781 17893736 ~ 17907615 (-)
G139591 NA non-coding upstream 404257 18087212 ~ 18107403 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 251080 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1216987 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1312404 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1574476 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 1685558 15990149 ~ 15993645 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 118447 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 660508 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 723072 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1571779 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1578511 19261466 ~ 19262952 (-)

Expression


Co-expression Network