LOC122325235 (tsta3,LOC107559101,LOC107672948,LOC107672947)


Basic Information

Item Value
gene id LOC122325235
gene name tsta3,LOC107559101,LOC107672948,LOC107672947
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 24948293 ~ 24962830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220201.1
GTAGGCGTGTGTAGACTTAAGCGAGTCAACTGTTGGTATTTATAAtgcagatgtaaaaaaaaatcccctaTTCCGACAGAACTTAAAAAGCGAGAGGCAGCGTGCCAGAGACCAGACAACAAAGAGAAGATGGAGAAGTCAGTCGGGCCGATGCGTGTGTTGGTGACGGGCGGCAGCGGGCTGGTGGGGCGAGCGATAGAGCGGGTGGTGAAAGAGGAGGGCGGAGGAAGAGAAGGGGATGAATGGATATTCCTGTCGTCCAAAGATGCCAATCTCATGAGCGTTGAAGCCACGAGAGCGGTCTTTCAGAAACATCGTCCGACACATGTGATTCATTTGGCTACAATAGTGAGGGGGCTCTATATAAACATGAAACATAACTTGGACTTCTGGAGGATTAATGTGCACATCAATGACAACGTGCTGCACACGGCTCAGGAGTTCGGGGTGGTGAAGGTCATTTCCTGTCTGTCTACGTGTGCTTTTCCAGATAAAACCACCTACCCTATAGATGAGACCATgtTGCACAGCGGCCCCCCCCATGAGTCTAATTATGGGTATGCCTATGCCAAACGCATGATTGACATCCACAACCGGGCGTTATATCAGCAGTACGGTGTGAAATACACCGCCATCATCCCCACCAATATGTTCGGACCCCATGACAACTACAACATTGAGGACAGTCACGTGATGCCGGGGTTGATCCACAAGACGTACCTGGCAAAGAAGGAAGGTAAACCTCTGGAGGTCTGGGGTACAGGTCGGGCTCTGCGGCAGTTCATCTATTCTCTGGATCTAGCTCGTCTGTTTCTGTGGGTTCTGAGGGAGTATGACGAGGTGGAGCCCATTATTCTGTCAGTTGGAGAGGAGGATGAGTTGTCTATAAAGGATGCTGTGGAAGCTGTGGTTGAAGCGTTCGAGTTCAAGGGGAAAATTGTTTATGATACTAGTAAACCAGACGGTCAGTTCAGGAAAACCGCCAGTAACGCCAAACTACGCAAATACCGGCCAGACTTCAAGTTCACGCCGTTCAGACAAGcCATCAAGGAGACATGTGATTGGTTTGCAGCCAATTATGACACTGCCCGTAAATGAAGATCTTCAAACCTGATTGGTTGCAGGAAGTCTAAACAACCAAACCCTGACTCATCtaacaaacagcaacaacaacaacaaaaagaaatttaCCTAAACCAAGGacaaatatataagtatatatagaATTTGACATGTTACACAGTTTTTGGGgtaaatatatatagtcaatataataataaatgtgtaatatatactACAAgaactactactaataataatatccaGCTGTAacatttcttgtaaaaaaatatgtacacgTGATAAATTATCTTAATAAGAATTGTAAaagaatataacaaaaaataatatattcacaGTTCTTAAGACACTGATTACTTTAAAAAGTGCTACTTAAGGTGTATTTAAGTTCAGTAACCATGTTTGCGCAAATCATTTGTAATGCAGCTAAACCTACAGAAGAGAGTCTTGTCAAATAATAATCTGCTAGTTAGCAAGTACTGTGACGAATGGGGCTAAAGAGTCTCATCACTCAATAGTAAAGAGGGGTGGGGTTAGTAGaactcattagcatttaaagggacatgcaCAGAAACAGGTTGCATTTAacatagcagttttttttaaggatatggctgttttaaaattgaaaagtgCAGCATATTTTATTCACCCACCCCCCGTCctaagtgtatatgactttcttttttcagacgaACACTCTtagtcttttaaaaatgtatcctcgCTCTTCCAAGCTCGGTAATGCTGGTGCATACCAGCCATTATTTTtaagctccataaatcagatatatccgcaagtactgcAACGTAAAAGTAACCTATACGCCTTCgtggggttatcacatgtcctctgaagcagatcaataacaaaaatatttagttttaaaatgcaacttaCGTCGTACATTGAGTCAGAAGTCAGGAAGTCAAGAAGACAGAACGGAGGTCATAGGTCACTTTAGGTTCACAGAGCTTAAAaaaatggccgctatccaccagcCTTACCACgtttggaagagccaggatacatttgtaaaaaacgGACTGAGTTCGTCTGAAAGAACAAAGTCAtacacacctaggatggcttccaGGTGAGTATTTTatggtgtaattttcatttttgggtgaactattcctttaaatatagctatctgtttttttttcttaagaattGTTACCACTGTGCGACAgaagctttgtttttatttttccagttgattaaaatagttttcttgGTGATAACTGTAGATAGAAATATGGGGGTGATGTAATCCGGTGTGGGTTTTATTTGTGAACGATGACATACTAAACCACAATCAAAGATATTGGATTGGTTTAACTGAATATtttcaacaacatttttttttgtaattgaatgatttttaaaaaccataatTATCTTTTAAATCCATTTCAAGTTTTTCGAATGCACGCTTTATGTGGGACCATATACAATGAACAGTTCCTGTCATTTTCTGGGTGTTTTTCCTAATCATACTATACTtgtatttccaaaaataaacttgcattttaaatga

Function

symbol description
tsta3 GDP-L-fucose synthase

NR:

description
PREDICTED: GDP-L-fucose synthase isoform X2

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0050662 obsolete coenzyme binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K02377 TSTA3, fcl; GDP-L-fucose synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220201.1 True 2624 mRNA 0.40 10 24948293 24962830

Neighbor

gene id symbol gene type direction distance location
arhgap39 arhgap39,LOC107672944,LOC107559071 coding upstream 33007 24868491 ~ 24915286 (+)
dusp10 dusp10,LOC107739190,LOC107568217,LOC107710641,LOC107559105,LOC107704023 coding upstream 198056 24733149 ~ 24750237 (+)
taf1a NA coding upstream 218498 24712575 ~ 24729795 (+)
aida aida,LOC107704043,LOC107710640,LOC107568227 coding upstream 250161 24691901 ~ 24698132 (+)
LOC122325456 LOC107669443,LOC107559110,LOC107712571,LOC107736022 coding upstream 328409 24615563 ~ 24619884 (+)
LOC122325236 tsta3,LOC107672948,LOC107672949 coding downstream 32119 24994949 ~ 25002839 (+)
LOC122325237 tsta3,LOC107672948,LOC107672949 coding downstream 42107 25004937 ~ 25010425 (+)
pycr3 pycrl coding downstream 48503 25011333 ~ 25018549 (+)
eef1db eef1d,LOC107557023,LOC107728121,LOC107655838 coding downstream 55868 25018698 ~ 25028972 (+)
si:ch211-221n20.8 LOC107557001 coding downstream 67118 25029948 ~ 25042962 (+)
G141706 NA non-coding upstream 12906 24935093 ~ 24935387 (+)
LOC122324293 NA non-coding upstream 147953 24799170 ~ 24800340 (+)
G141609 NA non-coding upstream 149886 24797199 ~ 24798407 (+)
LOC122324292 NA non-coding upstream 151923 24756267 ~ 24796370 (+)
G141722 NA non-coding downstream 118519 25081349 ~ 25081939 (+)
G141733 NA non-coding downstream 139069 25101899 ~ 25102720 (+)
G141746 NA non-coding downstream 187089 25149919 ~ 25150737 (+)
G141719 NA non-coding downstream 206288 25169118 ~ 25170298 (+)
G141753 NA non-coding downstream 217512 25180342 ~ 25181024 (+)
G141524 NA other upstream 454912 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other upstream 465632 24456990 ~ 24482661 (+)
G141475 NA other upstream 873870 24072871 ~ 24074423 (+)
pln NA other upstream 1596638 23343715 ~ 23351655 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 2087966 22842805 ~ 22860327 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 6050 24968880 ~ 24994837 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other downstream 201151 25163981 ~ 25168421 (+)
G141775 NA other downstream 259137 25221967 ~ 25223109 (+)
fig4a fig4,fig4b,LOC107667833 other downstream 288068 25250898 ~ 25311427 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other downstream 813645 25776475 ~ 25828915 (+)

Expression


Co-expression Network