CI01000001_10694664_10713151


Basic Information

Item Value
gene id CI01000001_10694664_10713151
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10694467 ~ 10714684 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10694664_10713151.mRNA
CTTTAAATGAGACAAGAACAGACCATCCTCCTTCATAATTCATTATTTATGCACAAGAGCGATCCAGAGGATCGTACAAAATTGGAGCTGGGCTGCGAATCAAAGCTCTGGCACGACAAACCATAAGAAAGAGAGGGATTTTGAAGGAGGGAGGGAATATCGACAAGGAGAGTCACATCGACAGAGGCTGCTGAAATATGAAGGCTCTTCCAAAGAACCAGGGACGAACCGATCAGATTTTGGGCGCTATGGCGGATATGCTGACATCTCTGGCGATACCCAATCAGAAGTGGAACTCAGAGGGTATTGAGCACCTGAATGTGAAACCGGACCAGAAGACGGGACAACAACTCCCTTGGGACACAGAGCAACTGAACTGGGATGAAATGTCCCGGGACAGCCTGGAAAGAGTCCGAAGAAGAGACAGAGCAAGGAACAAAAACTGGTCCACAGATGGCATTTCCACACTGATGTTTTATGAACAAAAATCCCAGGATGAGATAAAGGACAGAGGAAGTGCATGCTGCTCTAGACATCAGAATAAGATGCAAGAGGAGACTTTATATGGAAATGGAAGCAGGAGAAGTTTGGTGTCTGACATCTTAGCGACTGGATTTATAGGATCTAGGGAGAGTAATCAGCTGAGGTGCATCTGTTTAAATACAGTATGCAAGGAATGGGGAGTTCTGGGCCCGATGAGGGAATGGTTTGTTGGCTACTTCAGTGAATTCTCCATTCTCATTGGCTGTATCGTACTTATATGGAGCCTCTCAGCTTTTCTGCAATAGACAGAATTGGGCTCTAGAGAGAGACTAATTCCATCAACACACGCACAAACTCAGCAAAATCCCCAGCTGCTCATGTACTCGAAAAGAGGCCTGCACTCCATTTCCTGCGCCTCTTTACCATTAGCATCACATTCCGACACACACTTTTCTTACACAAGCCTCATCTTTTTATAGGGTTTTTCACACTTGAAACTGTTAAAGGGATAGTTTACTGAAAAATGAAAACTGTCATCAACTTTATTTCTTCTGCTTAACAGACAATCCCTTTAGCCCTGGGTTATCTTGTTCCATATTTTTCATCGTTATTACTTTCATCTTGTTTTGGTAATGAATCCTGGGTAGTCAGGTTTAGAGATTTTACACTGCACATCTGAAAACCCTGTGAAGTTTTTTTTTTCTTTTATACATGAACATATGAGATCAATGGCAACCAGGTTTTGTCCATTTTTGCATATTTTTTCAGCAATTGCACTTTAAACATTCTGATTTGTTGTTATTTTTTTTATCTATTAACATAAGTTTGTAACTTGGATGGAAACATAGCTATTGATTGGACAAGTAGTACAGCATCAACTTTAGGAATAGTTCACCCAAAAATATAAATTATCCCATAGTTTACTCACCTTCAAGCCATCAATGACTTTCTTTTTTCAGCCAAACACAATCAGAGTTCCAGCGGAAGGGTGACCTCTGACATGATGACTGATGTGGGATGGGTAATCAGTCCTTTTAGACTTCTAATATGTGATTGGCTTTTTGTTTTGCGTAGCATAAGCTTAGGCGAGAATTGACAAACACGGAAGCACAGAGGATAAAGCAAAACAAAAAGCCGATCACATATTAGAAGTCTAAAAGGAGACGTTTTATAGAAAACCCACTTGAGTCGTATGGATTACTTTTATTATGGATGGATGCGCTTTTTGGAGCTTCAAAAACTTGGGCACTATTCAATGCCGTTATAAAGCTGGAAAGAGCCAGAATATTATTTAATATAACTCTGATTCTGAAGCTAGGATGGTTTGAGGGTGAGTAAATTATGAACTATTCCTTTAATAACTGCTTGTCCATCTGTGGAAATGTCACCATGCACATCCTCTGTTTTTTCTTCTAAAATACACAGATAAAATACATCATTTTTTTAGATGCTAAAATCTAAAAGTTTGAGACACTGAGGCAGTTTAGGCTTGGTTGTGTATCACTAAACAGCTCGTAATATTCTAACGGTCCTAATTATCATAGCTATTTATTATTGGTACTATTATAGTGAAATGTATCACATAATATATAACAAAATAATTGAAACCTGGGGTTTAAAACGTTTTTTTTTTACTGCTTGTTATATCTGGAGGGCAAAGCCCTCATGTCAGCTTTACCTCAATAACAATCCCACATTGGTTGTGTTGAAATGTCATTGTAAATCACCAGCGCTGCAACAGAACATCCAATCAGAGGTGACAAGCACAAAAACACACATTCGCCATCTAGCCTCCAGCCTCTGTGAAGTATGAACACAGACACATGTGATCAAAACAA

Function

NR:

description
Rho guanine nucleotide exchange factor 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10694664_10713151.mRNA True 2321 mRNA 0.40 5 10694467 10714684

Neighbor

gene id symbol gene type direction distance location
CI01000001_10688354_10691353 NA coding upstream 3058 10687862 ~ 10691409 (+)
CI01000001_10604980_10633286 KMT2D coding upstream 60927 10603888 ~ 10633540 (+)
CI01000001_10590766_10595793 DHH coding upstream 98229 10590436 ~ 10596238 (+)
CI01000001_10582439_10582802 NA coding upstream 111646 10582378 ~ 10582821 (+)
CI01000001_10573770_10582123 LMBR1L coding upstream 112229 10573770 ~ 10582238 (+)
CI01000001_10715529_10716091 NA coding downstream 430 10715114 ~ 10716910 (+)
CI01000001_10749174_10779222 ARHGEF25A coding downstream 34490 10749174 ~ 10779454 (+)
CI01000001_10807407_10818870 SLC26A10 coding downstream 92636 10807320 ~ 10820053 (+)
CI01000001_10856786_10861403 C1GALT1A coding downstream 141276 10855960 ~ 10862138 (+)
CI01000001_10968536_10981345 NA coding downstream 253660 10968344 ~ 10981787 (+)
G18998 NA non-coding upstream 37196 10655387 ~ 10657271 (+)
G19041 NA non-coding upstream 39545 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 95216 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 95653 10598604 ~ 10598814 (+)
G19009 NA non-coding upstream 108173 10585956 ~ 10586294 (+)
G19080 NA non-coding downstream 99706 10814390 ~ 10815702 (+)
G19087 NA non-coding downstream 159298 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 159986 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 177753 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 210844 10925528 ~ 10986466 (+)
CI01000001_10538498_10539667 RPS26 other upstream 154621 10538388 ~ 10539846 (+)
G18937 NA other upstream 218078 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 297762 10394851 ~ 10396705 (+)
G18872 NA other upstream 413098 10271146 ~ 10281369 (+)
G18873 NA other upstream 433753 10223879 ~ 10260714 (+)
G19039 NA other downstream 136240 10850924 ~ 10853983 (+)
G19314 NA other downstream 786510 11501194 ~ 11558673 (+)
G19395 NA other downstream 966638 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2798720 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location