ccdc25 (ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775)


Basic Information

Item Value
gene id ccdc25
gene name ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20293294 ~ 20296159 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220219.1
TCACTTCATTGCAGCGCTGCTTGTTCCTGTTGTGGTCGGGATAGATGGTGCACATGACATGTGCCTCTGCTAGAAGATTATTTACCTCTGATGTGCTCCGTTTTTTGTTGAATACACAATTGTTGAATACGTAGACCTTTCAAAGGTTGCGTCTTTGCGTGAAAAGATggtgttttactttaaaagcGCCGTTGTCTCGCCGACCTATACCATCTATATGGGCAAAGATAAATATGAAAATGAAGATCTTATAAAATATGGATGGCCTGAAGATATTTGgttcCACGTGGACAAGCTCTCATCTGCCCATGTATATCTAAGAATGCCCAAGGGAACAACGATAGAAGAAATACCAAAAGACGTGCTTATCGACTGTGCCCAGCTtgtcaaaaacaacagcattcaAGgttGCAAAATGAACAACATTAATGTCGTCTACACGCCATGGGGcaatctgaaaaaaacaacagacatgGATGTCGGGCAGATAGGCTTCCATCGACAGAAGGAGGTGAAAATTGTGGCAGTAGAAAAGAAAATCAACGAAGTCGTCAACAGActagagaaaacaaaagaggaGCGGTATCCTGATCTTGCAGCGGAGAAAGAGTCCCGGGACAGGGAGGAAAGAAACGAGAAGAAGGCTCAATTACAAGAGCAGAAGAaaaaggagaaggaggagaCGAAGAAGAAAAAGGAGATGGAAGAATTAAGGAATTATTCATCACTTATGAAGAGTGACAACATGACCACAAATGAGggtGGCTACGATTCAGATGACTTCATGTAAAGAAAAGGAACGAGTCTGCAGTTAGGAAGAAATAACATCTTCCCCCACATTATCTTTCTTGTGAAAGGAAAGGACCTGAGACATCAAATATGAGCCATCAATAAGAAACAGCACTCGGGCTGATAAAGCGCCATGCCAGGGCCAGGAGCTTTTCTTTGAAAGTAGCTGTCGTTTCtttgaaaatacaaatgcaatatgtaaaatatgtaaagaataaaatagATTAGATTGCTCTTTTAAACCAGAAGAATTTAAAGATCTCTGCTGATTCTGTatattaaacagttttgttgttggtgtttttggAGGAATTAAAGATACTCGCTGTGGAGATGTGGTAATGGATCTGTAATTGATAAACCTTTTTGGAGTGATCCAATTGAATGACAAAtgcctaatttttttttgtttttgatgtccCAAACCAAATAAATCTTTGATTTACTCAGTTAA

Function

symbol description
ccdc25 Predicted to enable DNA binding activity. Predicted to be involved in positive regulation of cell motility. Predicted to be located in endomembrane system. Predicted to be integral component of plasma membrane. Orthologous to human CCDC25 (coiled-coil domain containing 25).

NR:

description
PREDICTED: coiled-coil domain-containing protein 25

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220219.1 True 1243 mRNA 0.39 9 20293294 20296159

Neighbor

gene id symbol gene type direction distance location
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding downstream 29444 20258253 ~ 20263850 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding downstream 50983 20230975 ~ 20242311 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding downstream 63473 20173548 ~ 20229821 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding downstream 222017 20069406 ~ 20071277 (-)
LOC122325502 galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076 coding downstream 444249 19827100 ~ 19849045 (-)
pbk pbk,LOC107598104,LOC107717112,LOC107727585,LOC107676230,LOC107602197 coding upstream 5247 20301406 ~ 20304874 (-)
LOC122324455 slc35d3,LOC107727602,LOC107676236,LOC107675071,LOC107717122 coding upstream 10480 20306639 ~ 20311285 (-)
pex7 pex7,LOC107727680,LOC107676274 coding upstream 15265 20311424 ~ 20328698 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC107598074 coding upstream 34531 20330690 ~ 20334913 (-)
tpd52l1 rnf217,tpd52l1,LOC107727670,LOC107676269,LOC107602193,LOC107675045,LOC107716996,LOC107602194,LOC107676250,LOC107675093,LOC107727644 coding upstream 77026 20373185 ~ 20407062 (-)
G140328 NA non-coding downstream 6299 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 25028 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 125296 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 383647 19905631 ~ 19909647 (-)
G140248 NA non-coding downstream 491626 19800522 ~ 19801668 (-)
G140413 NA non-coding upstream 330496 20626655 ~ 20626863 (-)
G140449 NA non-coding upstream 440429 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 696362 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 700207 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 749666 21045825 ~ 21049976 (-)
G140277 cad,LOC107602171 other downstream 230317 20061602 ~ 20062977 (-)
G140227 cad other downstream 233691 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 678092 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 989326 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 1030342 19261466 ~ 19262952 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 114470 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 338137 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 672029 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 793245 21089404 ~ 21091008 (-)
G140616 NA other upstream 902551 21198710 ~ 21278741 (-)

Expression


Co-expression Network