vamp4 (vamp4,LOC107712870,LOC107733808)


Basic Information

Item Value
gene id vamp4
gene name vamp4,LOC107712870,LOC107733808
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 8261758 ~ 8271223 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220262.1
CCCGTCTTTCCCCCCTCTCCTGTTTTCTGGAAAAGCTCTGCCGCGCTCCTGGATAAAGGAGAAGCCATTTTCCGACAGCTCTTCCAGCAAGAGAAGCAGAGAGCAGTCTCAGAGAGAGGACAGTGGACTCAATGAGGGAGCCAGAGAGGGAGGAGCAGCTCGATCCCAGCATGCCCCCTAAATTTAAACGGCATCTGAATGATGACGAGGTCACCGGCTCCATTCGCAGTGAGCGGAGGAACCTTCTAGAGGAAGACTCGGATGAAGAGGAGGACTTTTTCCTgagaGGCCCAACAGGACCAAGATTTGGAggccaaaatgacaaaattagaCAGGTGCAGTCTCAGGTTGATGAGGTCATTGACGTCATGCAGGAGAACATCTCTAAAGTGATCGAACGCGGGGAACGGTTGGACGAGCTGCAGGATAAATCTGAAAGCCTTTCGGACAACGCATCGGCGTTCAGCAGTAGAGCCAAGCAGCTCCACAGAAGGATGTGGTGGAGAGACATGAAGATGAAAATGATTGTAGCGTTGGTGGTCGTCATCCTTCTCCTCATCATAATCATTCCTGTGATCCTGCGGTATCGCTAGTGTCTGGTCGGGAGGTTAGAGGCATGACGTTCTCTTCCTCCCTCCTCTCCCTCATTTTCTGCTGTCATTCCTCCGTACCAGAGGGGGCGCTGCACAGGGTTGGGCTGCCCACTGTATTTGCCTATTTCGGCAGGGTCTGGAAACATAACAAACGGGGCAGTGTTTATCGCGTGCGTGTACGACAACGTATCAGGCTCTCGAAAAGAAGGCACAACACTGGTGCAGACCAATCTCTTGTACGCGCACAGACACAGTGGTTATTTTGTTGTATATGCATTCAGTAAATTCAAGATTTACTATACACAATGAAACATGGATTAAAAATTTTAGCCCTGCATTCTGGTGGTATTTCGATGTCCTCTTTATAGTTAATTAGACTTTAGAGCTGTTCTGCTTACACCATGATACACGTTTAACGATTAAAGCGGATCAATTTCCCGCGTGGGTAGGTCTATGAAATACTGTCTTCTCAGGTGGGTGGGGCCAAACAGGAAACCTGATGATGTCACGCTGCACCATGGCTGCGATGTCATCATCTGTTTGTATGACTCCTGAAAGTTTTAACACGGACAAAACATTGGGCGTAATGTTACTTAATATTTGCTGCTATTACCTGCTgtaatgtttttgcatatttggcAACGAAGTTTTAATCGACTGTGGTTAATTCTGTTGGTTATTTTGATATGAAGGaattattttcagctttttttttttttacagtttatcaTGCTTGTAAAACggtttatgtaaaaatgataGTAATCTTCGCTGGTGTAATTTTAACAGCTTGCATTGGTCAGTAATGTAACagttgtgtgtgatgatgatttAGTTGAGTTGCTGAAGGTGAGCTGAACACTTAATCCGTATTATTTtactgacagtttttttttttttgttatatttatttgtaaataagtCGGCACTGGCTTTCCATTGGGAGACTGTGAAATaatcttgcatttaaataaagtgattttaaagGG

Function

symbol description
vamp4 Predicted to be involved in Golgi ribbon formation; SNARE complex assembly; and microtubule cytoskeleton organization. Predicted to act upstream of or within vesicle-mediated transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of SNARE complex. Predicted to be active in synaptic vesicle and trans-Golgi network. Is expressed in central nervous system. Orthologous to human VAMP4 (vesicle associated membrane protein 4).

NR:

description
vesicle-associated membrane protein 4 isoform X1

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K08513 VAMP4; vesicle-associated membrane protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220262.1 True 1582 mRNA 0.44 8 8261758 8271223

Neighbor

gene id symbol gene type direction distance location
myoc myoc,LOC107669152,LOC107581474,LOC107712866,LOC107697243,LOC107733809 coding downstream 3767 8251452 ~ 8257991 (-)
prdx6 prdx6,LOC107712864,LOC107597803 coding downstream 126727 8130352 ~ 8135031 (-)
jun jun,LOC107712863,LOC107581481,LOC107739852 coding downstream 261227 7998591 ~ 8000531 (-)
LOC122324580 si:dkey-86e18.2,LOC107658157,LOC107739861,LOC107597817 coding downstream 265320 7992597 ~ 7996438 (-)
si:dkey-86e18.1 LOC107739858,LOC107658158,LOC107597818,LOC102784436,LOC103354166,LOC102300794 coding downstream 269449 7985891 ~ 7992309 (-)
itpa itpa,LOC107712840 coding upstream 12819 8284042 ~ 8287245 (-)
tmed5 tmed5,LOC107733818,LOC107597813,LOC107712842,LOC107581519,LOC108415774 coding upstream 65384 8336607 ~ 8340950 (-)
LOC122324856 LOC107733811 coding upstream 131576 8402799 ~ 8408257 (-)
LOC122325066 LOC107687338,LOC107597794,LOC107728091,LOC107712844,LOC107581495 coding upstream 301329 8572552 ~ 8591185 (-)
prkaa2 prkaa2,LOC107716554 coding upstream 807522 9078745 ~ 9095364 (-)
G136935 NA non-coding downstream 466 8261083 ~ 8261292 (-)
G136909 NA non-coding downstream 53814 8202900 ~ 8207944 (-)
LOC122325257 NA non-coding downstream 79099 8153665 ~ 8182659 (-)
G136804 NA non-coding downstream 349194 7912148 ~ 7912564 (-)
G136792 NA non-coding downstream 368433 7890258 ~ 7893325 (-)
LOC122325283 NA non-coding upstream 40268 8311491 ~ 8313967 (-)
G136962 LOC107687343,LOC107581497,LOC107697261,LOC107712873,LOC107597796 non-coding upstream 104262 8375485 ~ 8637526 (-)
G137053 NA non-coding upstream 479324 8750547 ~ 8750798 (-)
G137057 NA non-coding upstream 550568 8821791 ~ 8822181 (-)
G137102 NA non-coding upstream 847712 9118935 ~ 9124743 (-)
zyg11 zyg11,zyg11b,LOC107712854,LOC107669142,LOC107658153,LOC107721807 other downstream 462169 7785602 ~ 7799589 (-)
G136754 zyg11b,zyg11,LOC107658153,LOC107712854,LOC107669142,LOC107721807 other downstream 565693 7693955 ~ 7696065 (-)
LOC122324530 LOC107721814,LOC107597848,LOC107658179,LOC107712852,LOC107664819,LOC107581482 other downstream 660156 7544356 ~ 7601602 (-)
LOC122325222 kcnk13b,LOC107714748,LOC107581523,LOC107664806,LOC107721805,LOC107658168,LOC107597862 other downstream 825260 7432060 ~ 7436498 (-)
LOC122325546 psmc1,psmc1b,LOC107581524,LOC108443803,LOC108428647,LOC105894933,LOC105017692 other downstream 832476 7424836 ~ 7429282 (-)
pigc pigc,LOC107581520,LOC107669155,LOC107712841,LOC107697628,LOC107597814 other upstream 51890 8323113 ~ 8644759 (-)
LOC122324857 mysm1,LOC107687344,LOC107581496,LOC107597795,LOC107697304 other upstream 320469 8591692 ~ 8600955 (-)
G137054 LOC107660256,LOC107566921 other upstream 547631 8818854 ~ 8819327 (-)
G137056 NA other upstream 549931 8821154 ~ 8821719 (-)
bloc1s2 bloc1s2,LOC107712883,LOC107687185,LOC107581516,LOC107697361,LOC107716556 other upstream 984325 9255548 ~ 9283383 (-)

Expression


Co-expression Network