LOC122325306 (mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380)


Basic Information

Item Value
gene id LOC122325306
gene name mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25626652 ~ 25630935 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220313.1
TGTGGTCTTTAACATTTATGAACAtatagcacattttaaaataaaaggtctAAATTTAGGCTTCGCTGTAAAacttacaaatgtattttattgccTTGAAAAACATACGAAGGTTGAAACGTTGTGCATTTTCAgtttcaaatgtatatttaactgAGCTTCGCtgtctataatatttttttcggCCACATATTTTCTCCAGAATAAACACAAAGTTAAGTTTCTATTACAATAACGTTCTGTAAACGCAATCATGAACTAAACACATCTCCACCTAAAGGCTGAGACGAgaaactacacacacaaaacaaaacgttaCGTTTTAACACTTTAATCGATCTGCAGGGAGAGAAAAAACGCatcttattaaatataaaaaaaccatATTTGATATAATCTGACACGATTTTGTAAGAACGTTGCAAGAAGCAGACAAAATAGTCACAAAGTGCGAAGAACCCTAAAATATCGAGGACAGCGAAGTAGATCTAACGCGAGCTTCTTAAAGCGCGAGCTGAAAGGAAGCGAGGCGTTGTGTGCGGCGTGACATCACGCGCGTCCCGACAGCCGAGGCCCCCGGAGGTTTGCTCTTATTCTGTGGAGCCTTCGGTTCCGCGCGGAGCCCGAGCGCCATGACACGCGTTTCCGCTTAAAAACGCGCTTTCACGAGGGACACGACGGCGTCTGCGGTTCTAAAGAAAAATGCCTCTAAGAAAAATGCCTTATGGGAAACACCGTCGTTCGATTACATTCCAGAACTAGAGGACCAACACGAAGCTGCATTTTCTATGATAACGTTTTGTACCCAACCTGCTGGCGCGGACTTCTTTCGCATCGCAAACCTGCCGTCCTCGTCTCCCGAATCGTTTCTGCGACCGTCCCGCGAGGCGACTGCCTATCATGAGATTCCGAATTTACAAGCGTAAGGTGGTAATACTGACTCTAGTGGTGGTCATCTGCGGGTTCGCCGTCTGGAATAGCGGGAAACCCAAGAAGGCGAGCGCCGCCGCGTTTCCCAAAGAGACGGAAGCAGGCAAACGGAGCAGCGTTGGCGGTCAACTCCAAGTACAGGTCACGATCCCGGTAACCCGTAAGCCCGTCAACGAAACGCTTCCGGAAAAACAGCAATTACAAATCCAGGCAGCTGCCAAATCCGAAGTGGACAACGCAACTCTGGTGTACCGAGGAATCGTCTTTCAGCTCAACTTCGACCAGACCCTAAGAAACGAGGAGAAATTTCGCTCCCTGCGGCTGAAGGACGACTTGGTCGTCGTCGTCCAAGTTCACAACCGCCCCGAATACCTGCGCCTGCTGGTGGACAGCTTGAGGAAATCGAAAGGAATCGAGAACGTCTTGCTGATATTCAGCCACGACTTCTGGTCGCCGGAAATCAACCGGATCGTGGCGTCCGTCGACTTCTGCTTGGTCCTTCAGATATTCTTCCCTTTCAGCATCCAGCTCTACCCTCAAGAGTTCCCCGGGAACGACCCCAGGGACTGCCCTCGAGACATTCCCAAGAAAGATGCCTTAACCCTGGGCTGCTTAAACGCGGAGTACCCGGACTCCTTCGGACACTACCGGGAAGCCAAGTTCTCGCAGACCAAACACCATTGGTGGTGGAAGCTGCACTTCGTTTGGGATCGAGTCCGAGTCTTGAAGGAGCACCGAGGACTCTTATTGCTCATCGAGGAGGACCACTACCTCGCCCCCGATTTCTACCATCTCCTCAAACTCATGGCCTCCCTCAAGAAAGAGCAGTGTCCCGACTGCGACATCTTATCCCTAGGGAGCTACGGACACGTCGGCTACTCCAGCAAAGCCAACAAAGTGGAGGTGAAGGCGTGGAAGTCCACCGAGCATAACATGGGAATGGCGCTGAACCGAGACACCTACCAAAAACTCCTCAGATGCACCGATGCCTTCTGCACCTACGACGACTATAACTGGGACTGGTCGTTGCAGCACCTTACCGTGACCTGTTTGCCCGCGTTCCTGAAGGTCATGGTCAGCGAGGCGCCCCGCGTCTTCCACGCCGGCGACTGTGGCATGCACCACAAGAAGTCGGCTTGCATGCCGTCCAGCCAGAAGACGAAAATTGAGAATGTTCTCCAGAGCAGCGGGAACCAGTTGTTTCCCAAACAGCTGCTCATTACAAAGAGACTCCCAGCTTCCGGAGCCAAGGGAGTGGCTCCTCACGTCAAAAACGGAGGCTGGGGAGACATCAGGGACCATGAACTCTGCAAGAGCTACAGCCGATTGCAGTgactttgtattgtttttgttgtttgtttgtttgttgttgtttttttgcatcctcTAATGAAAGCCTTTAAAAGTTCTTAACGGACTATTTCTTCCTATTGCCTGTTTTATTGAgatattccaaataaaaaaagtatgtgaCGTTTGGATTTGGTGGTTATGAGCATCATTGAAGTATTATCACTGTTGTCATATTATCTattattaaacagcatttttgtgcCA
>XM_043220315.1
CTTTTTAGGAATCGGTAGCAGCGAGGCTAACGAGTGACAGCGCGTCCCCGCGACGCGCGCGTCGGCTGTCCGTCATGTGAAACGGCTAGGCTcggcgagaaaaaaaaaaaacgccgcTTGCGCGTTGAACGCCTCGACGCGTTTTTTCTGGCGCGCAGCGAAAGCGTCTTTAAACCCGGCTCGGCGTCGCGCTCGGTTCCCGCAGGTTTAATCGTGGCGTTCGCGGACGCGAAACCGAAAGCGCACGCATGCAGAAATTCTCTGCAGAGTGTGGTTCTAAAGAAAAATGCCTCTAAGAAAAATGCCTTATGGGAAACACCGTCGTTCGATTACATTCCAGAACTAGAGGACCAACACGAAGCTGCATTTTCTATGATAACGTTTTGTACCCAACCTGCTGGCGCGGACTTCTTTCGCATCGCAAACCTGCCGTCCTCGTCTCCCGAATCGTTTCTGCGACCGTCCCGCGAGGCGACTGCCTATCATGAGATTCCGAATTTACAAGCGTAAGGTGGTAATACTGACTCTAGTGGTGGTCATCTGCGGGTTCGCCGTCTGGAATAGCGGGAAACCCAAGAAGGCGAGCGCCGCCGCGTTTCCCAAAGAGACGGAAGCAGGCAAACGGAGCAGCGTTGGCGGTCAACTCCAAGTACAGGTCACGATCCCGGTAACCCGTAAGCCCGTCAACGAAACGCTTCCGGAAAAACAGCAATTACAAATCCAGGCAGCTGCCAAATCCGAAGTGGACAACGCAACTCTGGTGTACCGAGGAATCGTCTTTCAGCTCAACTTCGACCAGACCCTAAGAAACGAGGAGAAATTTCGCTCCCTGCGGCTGAAGGACGACTTGGTCGTCGTCGTCCAAGTTCACAACCGCCCCGAATACCTGCGCCTGCTGGTGGACAGCTTGAGGAAATCGAAAGGAATCGAGAACGTCTTGCTGATATTCAGCCACGACTTCTGGTCGCCGGAAATCAACCGGATCGTGGCGTCCGTCGACTTCTGCTTGGTCCTTCAGATATTCTTCCCTTTCAGCATCCAGCTCTACCCTCAAGAGTTCCCCGGGAACGACCCCAGGGACTGCCCTCGAGACATTCCCAAGAAAGATGCCTTAACCCTGGGCTGCTTAAACGCGGAGTACCCGGACTCCTTCGGACACTACCGGGAAGCCAAGTTCTCGCAGACCAAACACCATTGGTGGTGGAAGCTGCACTTCGTTTGGGATCGAGTCCGAGTCTTGAAGGAGCACCGAGGACTCTTATTGCTCATCGAGGAGGACCACTACCTCGCCCCCGATTTCTACCATCTCCTCAAACTCATGGCCTCCCTCAAGAAAGAGCAGTGTCCCGACTGCGACATCTTATCCCTAGGGAGCTACGGACACGTCGGCTACTCCAGCAAAGCCAACAAAGTGGAGGTGAAGGCGTGGAAGTCCACCGAGCATAACATGGGAATGGCGCTGAACCGAGACACCTACCAAAAACTCCTCAGATGCACCGATGCCTTCTGCACCTACGACGACTATAACTGGGACTGGTCGTTGCAGCACCTTACCGTGACCTGTTTGCCCGCGTTCCTGAAGGTCATGGTCAGCGAGGCGCCCCGCGTCTTCCACGCCGGCGACTGTGGCATGCACCACAAGAAGTCGGCTTGCATGCCGTCCAGCCAGAAGACGAAAATTGAGAATGTTCTCCAGAGCAGCGGGAACCAGTTGTTTCCCAAACAGCTGCTCATTACAAAGAGACTCCCAGCTTCCGGAGCCAAGGGAGTGGCTCCTCACGTCAAAAACGGAGGCTGGGGAGACATCAGGGACCATGAACTCTGCAAGAGCTACAGCCGATTGCAGTgactttgtattgtttttgttgtttgtttgtttgttgttgtttttttgcatcctcTAATGAAAGCCTTTAAAAGTTCTTAACGGACTATTTCTTCCTATTGCCTGTTTTATTGAgatattccaaataaaaaaagtatgtgaCGTTTGGATTTGGTGGTTATGAGCATCATTGAAGTATTATCACTGTTGTCATATTATCTattattaaacagcatttttgtgcCA

Function

symbol description
mgat2 Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi stack and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).

NR:

description
PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220313.1 True 2487 mRNA 0.49 2 25626652 25630935
XM_043220315.1 False 2071 mRNA 0.52 2 25626652 25630219

Neighbor

gene id symbol gene type direction distance location
hsp90aa1.1 hsp90aa1.1,LOC107704377,LOC107557012,LOC107564585,LOC103024454,LOC106533044 coding downstream 11376 25609316 ~ 25615276 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding downstream 17507 25597113 ~ 25609145 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding downstream 30468 25576029 ~ 25596184 (-)
LOC122325309 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 coding downstream 65411 25470782 ~ 25561241 (-)
gata4 gata4,LOC107671084,LOC107739180,LOC107557004,LOC107661355,LOC107728131,LOC107564601 coding downstream 403572 25212806 ~ 25223080 (-)
trnas-gcu_30 NA coding upstream 2925 25633860 ~ 25633943 (-)
LOC122325519 plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323 coding upstream 123565 25754500 ~ 25776163 (-)
pak5 pak5,LOC107659820,LOC107731598 coding upstream 257234 25888169 ~ 25935072 (-)
LOC122324391 LOC107712205,LOC107564326,LOC107659794 coding upstream 313199 25944134 ~ 25959702 (-)
magl NA coding upstream 333048 25963983 ~ 25976828 (-)
G142015 NA non-coding downstream 29840 25474206 ~ 25596812 (-)
G142042 NA non-coding downstream 47391 25514247 ~ 25579261 (-)
G142016 NA non-coding downstream 98691 25523201 ~ 25527961 (-)
G142026 NA non-coding downstream 167420 25457409 ~ 25459232 (-)
G142009 NA non-coding downstream 194966 25430799 ~ 25431686 (-)
G142201 plcb4,LOC107557901,LOC106608066,LOC107659823,LOC107564330 non-coding upstream 207437 25838372 ~ 25865079 (-)
G142260 NA non-coding upstream 375334 26006269 ~ 26010388 (-)
G142261 NA non-coding upstream 379715 26010650 ~ 26012248 (-)
G142245 NA non-coding upstream 386436 26017371 ~ 26033198 (-)
G142242 NA non-coding upstream 387784 26018719 ~ 26055565 (-)
mettl24 LOC107738893 other downstream 217877 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other downstream 249236 25326508 ~ 25377416 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 774873 24838652 ~ 24851779 (-)
G141651 NA other downstream 979231 24571413 ~ 24647421 (-)
slc35b2 slc35b2,LOC107704052,LOC107568229,LOC107559116,LOC107669435 other downstream 1094289 24524069 ~ 24532363 (-)
G142058 NA other upstream 17557 25648492 ~ 25650093 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other upstream 116732 25747667 ~ 25754008 (-)
LOC122324466 samd15 other upstream 419894 26050829 ~ 26054469 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 457480 26088415 ~ 26096971 (-)
G142281 NA other upstream 554725 26185660 ~ 26187919 (-)

Expression


Co-expression Network