CI01000001_10807407_10818870 (SLC26A10)


Basic Information

Item Value
gene id CI01000001_10807407_10818870
gene name SLC26A10
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 10807320 ~ 10820053 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_10807407_10818870.mRNA
CTATAAATGACGGGTTGGGCACTTGTTTGGAGCAGTTTAACTCTGAAGATTATTTACCTTGCTCTCGGAAGAACACTTTAGGACGAGATGAGCGCATCAGTGGCTGTGTATAGAAATATATACACCGAGGATCGCTTCAGACAGACGTATGGTACGGAAGCCCAGTCTAGAGGGAGAGAGCGGCTCCGCGACAGACTGGCGCAGAGATGCAGCTGCTCTCAGGTGGAGTGTGTTCACCTGCTCAAGAAGAGACTGCCCGTGTGCAGCTGGCTGCCAAAATACAAGCTCAAAAAATGGCTTTTAGGAGATATCATAGCGGGACTGACTGTTGGAATAGTACACATTCCCCAAGGAATGGCCTTTGCTTTGTTGACATCGGTGGCTCCTGTCTATGGTCTTTACACATCCTTCTTCCCTGTGGTTCTCTATATGCTCTTCGGCACTGGTCACCACGTTTCCACAGGTACCTTTGCTGTGTTGAGTCTGATGACAGGCTCAGTGGTGGAGCAACTGGTTCCCATCCCGCTCGCTCTGAATTCCAGTAGCCCAGAGGCTGCAGAGTTTGAGGCCCAGAGAATTGGGGTGGCATCAGCTGTAGCATTTCTCTCCGGCATAATGATGCTTTGCATGTGCGGCCTCCAGTTGGGTTTCCTTTCCACGTACCTCTCAGAACCGATTGTTAAGGCATTCACGAGTGCAGCCGCCTTCCATGTGACTGTCTCACAGCTGCAAAGCATGTTGGGATTACGACTACCCCGATATGCTGGCGCCTTCTCTCTTTTTAAGACTCTGGCTTCAGTGATGGAGAATGTGCCCCACACTAATTTGGCTGAGCTGGTGATCTCACTGCTCTGCCTGGCTGTTCTGGTGCCAGTTAAAGAGGTCAACTCACGCTTTCGGGAGCGTCTGCGCACTCCCATTCCTATAGAGATCATCACAGTAATAATTGCAACAGGAATTACATATGCCTTTTCTCTGGATTCCAAGTATGACATACAGATAGTAGGACACATTCCAGCAGGCTTCCCTGAGCCACGTCTGCCTGCATTGGAGACCATTCCAGAAATTGCCGGTGACACAGTTGCTATCACCCTTGTTGCCTACGCTGTGTCTGTTTCTCTGGCCATGATTTATGCTGATAAACATGGATACTCCATTGATCCAAATCAGGAGCTTCTAGCACATGGGATCTCCAACACTGTGTCATCTCTCTTCACCTGCTTCCCCAATTCAGCTACACTGGCCACTACCAACATACTGGATAGTGCTGGAGGTCACACACAGCTCGCAGGACTGTTCACAAGTCTGGTCGTTCTTATTGTACTTCTGCTGATAGGACCTCTATTTTACTTCTTACCCAAGATGGTGTGGCTTGTGACCTGGCTGTCAGTAGTTGTGCTAAATGTTGACCTGGGCCTGGCCATTGGGGTGGTCTTCTCCATGATGACAGTTATCTGTCGCACACAAAGGGCCAGCTGCTCTGTGTTAGGAAGAGCCGACAACACGGAGATTTACAGATCCATCAACAACCATAATAAATGCTATGAAGTCCCTGGTGTGAAGATCCTGACCTACAATGGGCCTATCTACTACGGGAACCGTAGCTTTTTCAAGGCCGATATGGCTCAGCTTCTGGGCCTCACGCCTGAGAGGATACGCAGCCGAGAGAAAGCTCTGAAGGCCATAGAGAAGAGAGAGAGAGAGGCCATCGACTCTGTAGAACAAGGAGTTGCAGACAGTTCATTTTCTTCAAAGAATAATTTGTTCAGATCAGAGATGGCTGAGGGTGAAGTCCAGGCCGTGTTGATAGACTGCAGCAGTGTCATTTTTGTGGATGTTGCGGGAGCTCGATTATTCATACAGATGTGCATGGAGTGCCAGAAGATTGGGGTAACAATATACCTGGCTAACTGCAATGAGAGTGTACTGAAGATTCTCACATCCAGCGGGCTCATGAACTACATGAATCCTCAACACATCTTTGTTACAGTCCATGATGCTGTGGTCTACATACAACAGCAGCGGGAGAAACCTCCTGAGAACAACACAACGGTATGGGTATGATTTATCTGAGACTACCAAAGTAATGCAAGATTCATTCTAACTGATACTCAAAACAGGACCCGAAGACCTGTGGGTGACTACAAGTGTGTCGAGGATCGAGTCAATCCAACATTTATTTGGACTCAACATGCTGTGATGAGTTTTTCAGGGCCCTCTATGGTGTCTAAGAGTACGCTGCTGCGGTGGCTGTTGTGTTCATTACTTGCTCAAGGCCTGTTCACACCAAAACAATACGAAAATTTGATGCTATAAATATTTTAATTTGAATGAACGACTGGTAATGTGTCCATTTAGACCAACACAAAGATTTGCATACCAAGAGGTGTTCTTTTCCATCTTTTCCATCTAAGAAAACTGGCCAAACAATAAGATTCATGTTTTTGGTCACATGCCCAGAGCAGATGCTGTTACATAAAACTACAACTTGGTGGCGCTCACAAACAGGCTACTTTGCTGAGTGACAGTGAACAGCGGAGGAATAATCTTGTCTCTTTGTACTCTTATTTTACGTGTTGTTTGATGTCTGAATCTGGACGGATGTTTGAAGACACGTATATACTGTTTGACTTCCTTATTCGTGACAAGCAGGTGTCAGGACACGAACAGACAGTTAAGCAGTGCTTTGTTTACTGTGTTACCAGGGTATTCCAGCTTCTTTTTAAAAAAAATAAATAAACGCCACCTACTGTTAGAGAGTGAAATTGCATTTTCATTCAGTCCGTCTGCAGTTTTTATGCATTGGTTCCTAAAATCGGACAGAATATTCGTGCCAAACATTTGTGTTGGTGTGAATCGGCCTTAACATGCACACACATGAATAACAGCAGTGCTAACAATATTGCTAGCCCTGCAAACTCCATGTGTAGGCAGAAAAGAGAGATAAATTATGGTTGTTTTATTGATTCTGTATGTCTGAATCTTTTCAATTTATCAGAAGTGGCTGAATTAGTATTTTAATAATAATAATAATGTACATTCTGATCTTGCATTGTTGCCATATTTTACTTTTAGATAATACATAAATGCTGTGCATGTTATTAAAATGTCCTTCAAAGATAAAAAAAACAACAACAACACAATATTATTTATGAAATATTCACATTCTTGTCAAACTAATTGGTAATCATTACGTTGTCATGTTCAGAGATTGCCAACAGACCAAACCAAGAAAGAATTTTATAAA

Function

symbol description
slc26a10 Predicted to enable anion transmembrane transporter activity. Predicted to act upstream of or within sulfate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in otic placode and otic vesicle. Orthologous to human SLC26A10 (solute carrier family 26 member 10).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0019531 oxalate transmembrane transporter activity molecular_function

KEGG:

id description
K14707 SLC26A10; solute carrier family 26, member 10

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_10807407_10818870.mRNA True 3247 mRNA 0.44 17 10807320 10820053

Neighbor

gene id symbol gene type direction distance location
CI01000001_10749174_10779222 ARHGEF25A coding upstream 27866 10749174 ~ 10779454 (+)
CI01000001_10715529_10716091 NA coding upstream 90410 10715114 ~ 10716910 (+)
CI01000001_10694664_10713151 NA coding upstream 92636 10694467 ~ 10714684 (+)
CI01000001_10688354_10691353 NA coding upstream 115911 10687862 ~ 10691409 (+)
CI01000001_10604980_10633286 KMT2D coding upstream 173780 10603888 ~ 10633540 (+)
CI01000001_10856786_10861403 C1GALT1A coding downstream 35907 10855960 ~ 10862138 (+)
CI01000001_10968536_10981345 NA coding downstream 148291 10968344 ~ 10981787 (+)
CI01000001_10989337_10992917 BIRC5B coding downstream 169284 10989337 ~ 10992978 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding downstream 199426 11019479 ~ 11028524 (+)
CI01000001_11099313_11137500 HUWE1 coding downstream 279260 11099313 ~ 11138278 (+)
G18998 NA non-coding upstream 150049 10655387 ~ 10657271 (+)
G19041 NA non-coding upstream 152398 10654569 ~ 10654922 (+)
G18997 NA non-coding upstream 208069 10599026 ~ 10599251 (+)
G19008 NA non-coding upstream 208506 10598604 ~ 10598814 (+)
G19009 NA non-coding upstream 221026 10585956 ~ 10586294 (+)
G19087 NA non-coding downstream 53929 10873982 ~ 10874233 (+)
G19088 NA non-coding downstream 54617 10874670 ~ 10874871 (+)
G19034 NA non-coding downstream 72384 10892437 ~ 10896905 (+)
G19130 NA non-coding downstream 105475 10925528 ~ 10986466 (+)
G19121 NA non-coding downstream 250851 11070904 ~ 11126159 (+)
CI01000001_10538498_10539667 RPS26 other upstream 267474 10538388 ~ 10539846 (+)
G18937 NA other upstream 330931 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 410615 10394851 ~ 10396705 (+)
G18872 NA other upstream 525951 10271146 ~ 10281369 (+)
G18873 NA other upstream 546606 10223879 ~ 10260714 (+)
G19039 NA other downstream 30871 10850924 ~ 10853983 (+)
G19314 NA other downstream 681141 11501194 ~ 11558673 (+)
G19395 NA other downstream 861269 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2693351 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021740 slc26a10 coding NC_007134.7 CM002907.2 28077953 ~ 28091109 (+)