LOC122325333 (spats1,LOC107553422,LOC107736684,LOC107601458)


Basic Information

Item Value
gene id LOC122325333
gene name spats1,LOC107553422,LOC107736684,LOC107601458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18604651 ~ 18607543 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220348.1
TCAGTTTTGCTTATGTTCTCCTGGCAACGCATTATTACAATAGTTTTGTCTACGGCCTTTAACTCAGTTTTTCAAGATCACTGGATCATTTAGCAACGCAGTAAACACGAGATAGTGAAATGTCACGGTGTGGCGATATGAAGAAACACACCGACTTTGGTGACTCATTCTGGAGTTTTGGAAAAGAGCAAGACTTCAAGCCTCACATTAGACACGTTGAGCCTATTCTCACTGAATGTGACCTTGACTGGAAATCTCAGTTGCGCTGGATACCTGAACCTAGATACAGTGATGCCCCATTTCCACACATCAAAGACGTGAAGTTTCCCAATGAAAGAAAACTGATGAGATCCTTCCCACAGGCTAATAGCATGTCTGCATCTGAATGGAGTTTTTATCCAAACTTTGGACAACCCAAGACGTATCATGCTGGAAAGAGATGTTTTATGGATGGCATTAATCATACGAGAAGCATGAGATGCATTTCAGAAAATTCCCTGGAATCATCTATGGGGAGGAAAAAGCAGGCCACAGACAAATGCAGCATCTACCCTTCAACAAAGGTCAGACCATTTCTAGTTCCTGAGTACAGCCCTgacttttataaatatgaatcatCACTGCGCACAGCCACTTTTGGGTCCAGGCCTTTTGTCacatttaaaccatttattCACCTAAAACCACCAACAAAAGATATCAACGTACAGTGTGCAGAGAAACATAAAAGTCATGCTCGTGATGAGGATATTCGTGAAGTCAAGCAGCTGAGCAGCTGGAGGCCAGCACCAGACATCTATGACAGGACGGTTTTGCTGGACACCTAATTTGGAAGATGTCAAGCCATGCTTACATACTTGTTGTATTGTTAGAGCTTTCTATTTTATTTGGTTCTTACAAAGTGTTCAAGCAAATacaattgttttcttttcttcagcaCTACCTTATGGCTTTCCATTgagtatattttacagtattttgatatttattgttCAGCTCCAGATCTTCTCGTCGGAAAAGGCTGAATCAGGACAAAACGCCATGGGCTTTAGACAGTGAAAATGATTTGACCTTTTCTTTGCCTTATTAGCTGGAGGTCCGTCACATAGATTTTCCTTAATTACCTGACAAAGACAGATGAAGGTCTTTTTGCCGTGCTCAAATTTAATTGCAGGGTAGAATAGGGGACAGTTAAGTATGATTGTGTAGGGAATAAGTTTGTAATAGTTAATAAAAGAAACCCTTCTTGTTTCATCACAACCTATGACACTGTATACTATATCATTCATACCCAGTATGATATTATAAGCTAAATTTCTATTGTAGTCTGTTCGTTCTGAAACATATAATCTAATAGCGAAATATCTGTTCATAAActgttatttcaaaaaaataggATAAAATCcaacagcattttaaagaaaccta

Function

symbol description
spats1 Orthologous to human SPATS1 (spermatogenesis associated serine rich 1).

NR:

description
PREDICTED: spermatogenesis-associated serine-rich protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220348.1 True 1428 mRNA 0.39 7 18604651 18607543

Neighbor

gene id symbol gene type direction distance location
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding downstream 49357 18528438 ~ 18555294 (-)
tnfrsf21 tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348 coding downstream 131392 18453708 ~ 18473259 (-)
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding downstream 157279 18431833 ~ 18447372 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding downstream 172971 18419791 ~ 18431680 (-)
LOC122325499 LOC107683600,LOC107601464,LOC107578785 coding downstream 187875 18409158 ~ 18416776 (-)
si:dkey-1j5.4 si:dkey-1j5.4,LOC107698321,LOC107732379,LOC107553441,LOC107732529 coding upstream 53966 18661509 ~ 18669079 (-)
lbr LOC107732420,LOC107553478,LOC107698344,LOC107601526,LOC107732539,LOC107690042 coding upstream 63409 18670952 ~ 18679703 (-)
enah enah,LOC107732530,LOC107601525,LOC107732354 coding upstream 73350 18680893 ~ 18733506 (-)
slc5a6a slc5a6,slc5a6a,LOC107553475,LOC107689456,LOC107690043,LOC107601523 coding upstream 158616 18766159 ~ 18779707 (-)
rpl7l1 rpl7l1,LOC107689455,LOC107690050 coding upstream 174060 18781603 ~ 18784598 (-)
G139790 NA non-coding downstream 5739 18598694 ~ 18598912 (-)
LOC122324299 NA non-coding downstream 152519 18449944 ~ 18452132 (-)
G139708 adgrf6,LOC107683600 non-coding downstream 192797 18405804 ~ 18411854 (-)
G139704 NA non-coding downstream 262321 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 263468 18340729 ~ 18341183 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding upstream 19764 18627307 ~ 18634666 (-)
G139801 NA non-coding upstream 61895 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 217337 18824880 ~ 18829799 (-)
G139871 NA non-coding upstream 433247 19040790 ~ 19043914 (-)
G139903 NA non-coding upstream 552295 19159838 ~ 19160157 (-)
G139706 LOC107683600,LOC107601464 other downstream 157702 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 254529 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 780450 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1176528 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2142435 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 647191 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 653923 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 690691 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 993989 19601532 ~ 19615202 (-)
G140227 cad other upstream 1450081 20057624 ~ 20059603 (-)

Expression


Co-expression Network