smpdl3a (smpdl3a,LOC107727613)


Basic Information

Item Value
gene id smpdl3a
gene name smpdl3a,LOC107727613
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20626973 ~ 20632507 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220374.1
TGAGCGCCgcttgtttttcctgttttggtTTACACGAGCACGGTTTAATAATTCACACAGTCGCAGGAATGGCTTTACCTGTTCTCTTGTGCTTGCTCGGTCATGTTTTTCACCTGCAGGTTTCTGCCGTGCCGGTTAATAATGGCTTCAAACACCTGCAGAGCGCACCTAAATTCTGGCATATCTCGGACCTGCACTTGGATCCGACCTACCATATCACAGAAGACCACACCAAAGTCTGTTTTTCCTCCAAGGGTGTTCCTGCATTGGACCCGGGGGTTTTTGGTGACTTCCTGTGTGATTCCCCATACCAGCTCATTCTCTCAGCATTCAGACACATGAAACAAGCAGACCTGCAGCCTGAGTTCATTATATGGACAGGAGACAGCCCTCCTCATGTCCCGAAAGAAGAACTGTCCACTGATGTAGTGATTGATGTTATTGCCAATATGACTCTCACTATACGTCAGTTCTTCCCACAGCTGCCAGTTTATCCTGCCCTGGGCAACCATGACTACTGGCCACAGGATCAGTTACCAACATCTTCAAATGCCATTTACGATGCTGTAGCCAAACTCTGGTCTCCATGGTTGAACCCAGAAGCTGTAGCTACTTTGCAAAAAGGTGGCTTTTACTCTCTTGTGATCAAACCTGGCCTCCGTCTGGTGAGTCTGAACACAAACCTGTACTACAGTCCTAATCAAGTGACAGCGAATATGACAGACCCCGCTGGGCAGTTCCAGTGGCTGCAGGAAACACTTGAGCTATCAAGACAAAAGCAGGAGAAGGTCTACGTAATCGCTCACGTCCCCATCGGTTACCTACCCTACGCTATAAATACAACAGCCGTCCGAAGGCGCTACAATGAACAACTGGTCAAAATATTTCGCAGCTATAATGACGTCGTTCAGGGTCAATTCTACGGCCACACTCATCGAGACAGCATAATGGTTCTTCTGGATCAACACGGGAAAGCTGTGAACTCTATATTTGTCACACCTGCTGTTACACCTATCAAAAATGTGTTGGAGCCATTTTCGAACAATCCTGGCGTCCGTGCATATCTATACCACCCTGAGAATTATGGTTTACTGGATATTTGGCAGTACTATTTAAATCTCACAGAAGCAAACCTGGAACAGAAGTCAGACTGGAAGCTGGAATACATTATGACTGAGGCTTTTGATATCAATGACGTTCAGCCTCACAACTTGCACAAACTTGCTCGTAGGCTCGAGCAGCCACAGAGCAAAGACTTTGACAAGTATTTTAACCATTTCATGGTGAGCTACAATGTCAGCCTCATATGCGAGGGTTTGTGCAAAGCGATTCAAGTGTGTGCCGTGCAGTTTTTGGATCAAGACACCTACTCACAATGTGTTGCGAAAGCAGGCGTATGAGGTTAAGCTGTTACAGTTCTAGAGTATATACTTGAATTACTCACTTTAAACTTGATCAACTCTCtaaaaagatgattttaaacctttttttgatttaaaagaaatcacAGAACCTAATAATGGAAGAGTTAATCTCAGGAAAACATCTCGCTTCACCCCAAAATTCAAAggagaaaaaaactatttgtattaatttgaaCTCATTTATACAAAGAAAATTAGCAGAATTTAGGACtttaattttctatattttggtctataactttatatttatgaCACCGTTATTAAAgacttaaattataattttcaataagagaaaattttatatatatatatata

Function

symbol description
smpdl3a Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within sphingomyelin catabolic process. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human SMPDL3A (sphingomyelin phosphodiesterase acid like 3A).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: acid sphingomyelinase-like phosphodiesterase 3a, partial

GO:

id name namespace
GO:0006685 sphingomyelin catabolic process biological_process
GO:0005615 extracellular space cellular_component
GO:0004767 sphingomyelin phosphodiesterase activity molecular_function

KEGG:

id description
K01128 SMPDL3; sphingomyelin phosphodiesterase acid-like 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220374.1 True 1739 mRNA 0.42 8 20626973 20632507

Neighbor

gene id symbol gene type direction distance location
clvs2 clvs2,LOC107675233,LOC107675107 coding downstream 10758 20596263 ~ 20616215 (-)
tpd52l1 rnf217,tpd52l1,LOC107727670,LOC107676269,LOC107602193,LOC107675045,LOC107716996,LOC107602194,LOC107676250,LOC107675093,LOC107727644 coding downstream 219911 20373185 ~ 20407062 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC107598074 coding downstream 292060 20330690 ~ 20334913 (-)
pex7 pex7,LOC107727680,LOC107676274 coding downstream 298275 20311424 ~ 20328698 (-)
LOC122324455 slc35d3,LOC107727602,LOC107676236,LOC107675071,LOC107717122 coding downstream 315688 20306639 ~ 20311285 (-)
fabp7b fabp7b,fabp7,LOC107675216,LOC107602177,LOC107717149,LOC107675046,LOC102218712 coding upstream 210 20632717 ~ 20633782 (-)
cpsf2 cpsf2,LOC107704064,LOC107669458 coding upstream 28504 20661011 ~ 20673120 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding upstream 42490 20674997 ~ 20680821 (-)
ints9 ints9 coding upstream 74418 20706925 ~ 20718097 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding upstream 112695 20745202 ~ 20757734 (-)
G140413 NA non-coding downstream 110 20626655 ~ 20626863 (-)
G140328 NA non-coding downstream 339978 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 358707 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 458975 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 717326 19905631 ~ 19909647 (-)
G140449 NA non-coding upstream 104081 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 360014 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 363859 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 413318 21045825 ~ 21049976 (-)
G140592 NA non-coding upstream 450787 21083294 ~ 21083559 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 84724 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 563996 20061602 ~ 20062977 (-)
G140227 cad other downstream 567370 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 1011771 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 1323005 19298234 ~ 19303968 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 1789 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 335681 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 456897 21089404 ~ 21091008 (-)
G140616 NA other upstream 566203 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 851085 21483592 ~ 21505655 (-)

Expression


Co-expression Network